Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0284300 | OGI:11029340 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:10189140-10191810 | ||||||||
| Gene Symbol | PTR | ||||||||||
| DNA seq | ATGGTGGTGCGGGGGCGCGCGGGCGACGTTAAGGCGCCAAGAAGGCTGATTCGGCGACATGCACCAAGGTACCCATTAAAAATGTAGCATATAGAAAATAATTAGCTGGTGCATTTTAGCAACGGGATACAATAATAAGTTGTAAAATATCTAGCTAATTTTACTACATACCAGAAAGAACTATCAAGTTCTAACTATTGTTGGCAAACAATAATATAGGCACAAGTGCCATTATTTTCACATAGGGATTTCTAACTTTTTAATTGTATGAATAATTATTTTCATCACAACTACACAAATGATTTTTGCGAACATTCTTTTCACATGTGGCTCAAATGTGCAGCCTCCTATGTGGTGAGCCTCTTGCCTCAGACTCATGGGTGTTCTTTGAAAATAATTTTTGCAATCCTTTTGCACATAACTATTTTAGTGGAGTGCTTGAAACACAATGTAGCGTTCAAGCTTTTACACATAAAAACTAATTATGGAGCACTTAACCCGTAAGATAGTATTGAATCAATCTACTCCCTTCGTTATAGAAAAACATAGCCCACTTTACATCATGATAATATTTTATTCTTTCAAAATTTTTATATTTCTCTTTGTACAAGTCATATTAAACACACCAAGAGGCGAAGGTAATGCTAAATCAGTTCAGTAAATTCTATCCTTTAAAGTAGCTCCATGGGTTTCTCTGCAACCTGTATGTATAGGCCTCTAAGGTGGCAATATAAAATTAGTAGCCTTTGTTATAATAATATGATTAAAAGTTATATTTTCCTAATAAATTATTATTTTAAGATTCACGTTGACTATGTCTTTTTTAAAAAATATCATGTAGGGTCTCATATATTAAAAAGAAGCGCTATATAAGATATGTACATTTGATCAATTAAAAAGAGGGCTAGCAAGATGGTAAAAAGATAAACTTATGAGCAATAAAAGTTTCTCGATCGAGACTTCTTAAGGAAAAAGTAAACATTGAAAATTCAATTAAAAATGAAAAACTAACCTTACTTTAATTTCAACTTCTTTTGTTACAACTATTTCCAAAAAAAAAATAATATGCATGCCCGCGCAAATGCGCAGGCTACCTTCCTAGTTGCAAATAAAGGTTAATATACGTTGAGCCATATCTGCTAGAAAAGAAATAGCTATTGGATCCCTACCATACATTATACATGCATCCATGTGTCATTTTATGTTTGCAATTCCAAATCAACTACTATAGAGCGAAAGTATTGTTCTTTCAAGCGTTAAGAGTATCACGATTTAGAAAACTGTTTTCTTCGAGATTTTTTGAAGTTCTTAAACTCTCTTCTGCAACGCCCGGGGAATCCAGTAGTAAAATAAAAACTTGTGACAACCTTCTATATTCCATTTCTAAAGCTGCAGCGAGTCACCGTGTAAGGACAGTAGTGGTTTATAAATAAACTGCCTATCTAGTTTATCTTTGTATTCTCTCGATTTCAAATTACATGTTATTGGTTTTGTTCTCAGTAAAACATTTTAATGCTTGACCATCATTTTCTATGAACTCATCTATTTTACTATCATAAGATATATATTTCTAGATTTACCAAGAGAAAGTACTTTTATGATATACAATGCTCATGCTGTTAGACTACAATAATTTGTAAAAACTAATGGTCAAAGATACAAAAATTTAACTTGGGACAAACATGGAGGATAAGTAATTTAAAATGAAGTAAGTAAATAAGTTACAAAGTCAAACCAGTTGGCACATGTAACTTATAATGAGTAACGGTTGGAATCTTTCATTGCTTGCAGGTGCTTGGAGAAAGCAGCAGTCAGGACTGGTAATGATGCTGGTGCATGGTCGCTGTGCAGCGTGAACCAGGTGGAGGAGACCAAGATCTTGCTACGCATGGCACCCATCTTCGCCGCTGCCGTTCTCGGCTACATCCCTATGCCGCTCATCCTCACCTTCACCGTGCAGCAAGGCAGCACTATGAACACCAAGCTCGGATCCGTCCACATATCGCCAGCGACATTATTCCTGATCCCAATCATTTTCCAGCTGGTCATCCTCATTCTCTATGACCGCGTCATCGTGCCACCTCTCCGTAGGCTCACCGGCTATGTCGGTGGTGTCACCCACCTCCAGCGGATTGGCGTCGGTTTCATTGCTACCATCATGGCCACCGCCGTCGCTGCGGTGGTGGAGATAAGGAGGAAGTCTGCCGCCGATGAGAGCAGCCTCGCGGACGGCACCGCCGGGATCCCGTTATCTGTATTTTGGTTGACACCACAATTCTTCCTCATTGGCATCTTCGACGTCACCTCCTTCGTGGGGCTCCTCGAGTTCTTCTGCAGCGAGGTGTCTATGGGAATGAAGTCCATCGGTAGCTCCATCTTCTACTGCATCCTTGGCGTGTCGGCGTGGCTCGGCAGCCTGCTCATCCAGGTCACCAACCGTGTCACCCGAAGAGGCGGTAAAGGCAATGGCGGCAGCGGAGGATGGTTGGATGGGGCCAACTTGAACAATGGCAAGCTCGAGAGGTTCTACGTCGTCCTCTGCATCATCGAGGTGGTGGCACTGCTGTCCTACGTATTCTTCGCGAGGAGGTACGTGTACAGGAATGAGCAGAAGGTGGTGACCCAAGGAGGGACTATGTGTGACACTGGGAATGGTGCCGATATGATCTAA
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| CDS seq | ATGGTGGTGCGGGGGCGCGCGGGCGACGTTAAGGCGCCAAGAAGGCTGATTCGGCGACATGCACCAAGGTGCTTGGAGAAAGCAGCAGTCAGGACTGGTAATGATGCTGGTGCATGGTCGCTGTGCAGCGTGAACCAGGTGGAGGAGACCAAGATCTTGCTACGCATGGCACCCATCTTCGCCGCTGCCGTTCTCGGCTACATCCCTATGCCGCTCATCCTCACCTTCACCGTGCAGCAAGGCAGCACTATGAACACCAAGCTCGGATCCGTCCACATATCGCCAGCGACATTATTCCTGATCCCAATCATTTTCCAGCTGGTCATCCTCATTCTCTATGACCGCGTCATCGTGCCACCTCTCCGTAGGCTCACCGGCTATGTCGGTGGTGTCACCCACCTCCAGCGGATTGGCGTCGGTTTCATTGCTACCATCATGGCCACCGCCGTCGCTGCGGTGGTGGAGATAAGGAGGAAGTCTGCCGCCGATGAGAGCAGCCTCGCGGACGGCACCGCCGGGATCCCGTTATCTGTATTTTGGTTGACACCACAATTCTTCCTCATTGGCATCTTCGACGTCACCTCCTTCGTGGGGCTCCTCGAGTTCTTCTGCAGCGAGGTGTCTATGGGAATGAAGTCCATCGGTAGCTCCATCTTCTACTGCATCCTTGGCGTGTCGGCGTGGCTCGGCAGCCTGCTCATCCAGGTCACCAACCGTGTCACCCGAAGAGGCGGTAAAGGCAATGGCGGCAGCGGAGGATGGTTGGATGGGGCCAACTTGAACAATGGCAAGCTCGAGAGGTTCTACGTCGTCCTCTGCATCATCGAGGTGGTGGCACTGCTGTCCTACGTATTCTTCGCGAGGAGGTACGTGTACAGGAATGAGCAGAAGGTGGTGACCCAAGGAGGGACTATGTGTGACACTGGGAATGGTGCCGATATGATCTAA
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| Protein seq | MVVRGRAGDVKAPRRLIRRHAPRCLEKAAVRTGNDAGAWSLCSVNQVEETKILLRMAPIFAAAVLGYIPMPLILTFTVQQGSTMNTKLGSVHISPATLFLIPIIFQLVILILYDRVIVPPLRRLTGYVGGVTHLQRIGVGFIATIMATAVAAVVEIRRKSAADESSLADGTAGIPLSVFWLTPQFFLIGIFDVTSFVGLLEFFCSEVSMGMKSIGSSIFYCILGVSAWLGSLLIQVTNRVTRRGGKGNGGSGGWLDGANLNNGKLERFYVVLCIIEVVALLSYVFFARRYVYRNEQKVVTQGGTMCDTGNGADMI |
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| Function | Protein NRT1/ PTR FAMILY 4.6 [UniProtKB/Swiss-Prot:Q8H157] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0284300 | OsNip_11t0284300-00 | Chr11 | 10189140 | 10191810 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTGGTGCGGGGGCGCGCGGGCGACGTTAAGGCGCCAAGAAGGCTGATTCGGCGACATGCACCAAGGTGCTTGGAGAAAGCAGCAGTCAGGACTGGTAATGATGCTGGTGCATGGTCGCTGTGCAGCGTGAACCAGGTGGAGGAGACCAAGATCTTGCTACGCATGGCACCCATCTTCGCCGCTGCCGTTCTCGGCTACATCCCTATGCCGCTCATCCTCACCTTCACCGTGCAGCAAGGCAGCACTATGAACACCAAGCTCGGATCCGTCCACATATCGCCAGCGACATTATTCCTGATCCCAATCATTTTCCAGCTGGTCATCCTCATTCTCTATGACCGCGTCATCGTGCCACCTCTCCGTAGGCTCACCGGCTATGTCGGTGGTGTCACCCACCTCCAGCGGATTGGCGTCGGTTTCATTGCTACCATCATGGCCACCGCCGTCGCTGCGGTGGTGGAGATAAGGAGGAAGTCTGCCGCCGATGAGAGCAGCCTCGCGGACGGCACCGCCGGGATCCCGTTATCTGTATTTTGGTTGACACCACAATTCTTCCTCATTGGCATCTTCGACGTCACCTCCTTCGTGGGGCTCCTCGAGTTCTTCTGCAGCGAGGTGTCTATGGGAATGAAGTCCATCGGTAGCTCCATCTTCTACTGCATCCTTGGCGTGTCGGCGTGGCTCGGCAGCCTGCTCATCCAGGTCACCAACCGTGTCACCCGAAGAGGCGGTAAAGGCAATGGCGGCAGCGGAGGATGGTTGGATGGGGCCAACTTGAACAATGGCAAGCTCGAGAGGTTCTACGTCGTCCTCTGCATCATCGAGGTGGTGGCACTGCTGTCCTACGTATTCTTCGCGAGGAGGTACGTGTACAGGAATGAGCAGAAGGTGGTGACCCAAGGAGGGACTATGTGTGACACTGGGAATGGTGCCGATATGATCTAA
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| Protein seq | MVVRGRAGDVKAPRRLIRRHAPRCLEKAAVRTGNDAGAWSLCSVNQVEETKILLRMAPIFAAAVLGYIPMPLILTFTVQQGSTMNTKLGSVHISPATLFLIPIIFQLVILILYDRVIVPPLRRLTGYVGGVTHLQRIGVGFIATIMATAVAAVVEIRRKSAADESSLADGTAGIPLSVFWLTPQFFLIGIFDVTSFVGLLEFFCSEVSMGMKSIGSSIFYCILGVSAWLGSLLIQVTNRVTRRGGKGNGGSGGWLDGANLNNGKLERFYVVLCIIEVVALLSYVFFARRYVYRNEQKVVTQGGTMCDTGNGADMI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.667742 | 0.0 | 0.442580 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0283500 | RBH | 2.841143 | 0.991440 | 6.159686 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g18110 | RBH | 0.250339 | 0.000000 | 0.063161 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0284300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0010590 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0010520 | RBH | 0.0 | 0.0 | 0.507195 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0010510 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0010290 | RBH | 0.056778 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0010560 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0155400 | RBH | 0.152375 | 0 | 0.017227 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0010480 | RBH | 0.0 | 0.0 | 0.057605 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0156200 | RBH | 0.4123305 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0010570 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0010760 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0010370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0010160 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0010440 | RBH | 0.057429 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G010530 | RBH | 0.0 | 0.0 | 0.533009 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0010310 | RBH | 0.0 | 0.0 | 0.426583 |
