Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsNip_11g0243750 | OGI:11022420 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:7716589-7717070 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | GAGTGCAAACATTCCAATTAAATTACATGCATAAACATTATTACATCATAGCTAGTCAAAATTCAATGGAAATACTATTAGTTCTCAAACGCAGTAAGTAAACCCATCCATCATAGCAAGATGGTCAATGCCTGAAGATTACTTACATCGAATTTATCAAATGACTCAACGAATCGATTAAGGCCGGAGCGCGGCGACACAGATCGAGCCCTCAAGATGATGATGAGGATGCGGATCGATGAACGGGATGACGCCCAAGGCGCAGAGGATCGAGGTCGTGGGAAACGCTGGCGATGCAGATTGGGGACACGGACGCCGACGACCCCGCCGCAGGAGCTCCGGGAGCCGGCCGCAGGAGGGAGGGAAGCTGCCGTTACCGCCGGTGTACGGGGTATCGTACTCATCGCCGCCGCCGCCGCCATCGAAGCCGTACAACTAGCAAGTAGTAGCTCTCAGAGCGGAGCGTGGAGGGAGAAGCCGAG
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CDS seq | ATGGCGGCGGCGGCGGCGATGAGTACGATACCCCGTACACCGGCGGTAACGGCAGCTTCCCTCCCTCCTGCGGCCGGCTCCCGGAGCTCCTGCGGCGGGGTCGTCGGCGTCCGTGTCCCCAATCTGCATCGCCAGCGTTTCCCACGACCTCGATCCTCTGCGCCTTGGGCGTCATCCCGTTCATCGATCCGCATCCTCATCATCATCTTGAGGGCTCGATCTGTGTCGCCGCGCTCCGGCCTTAATCGATTCGTTGAGTCATTTGATAAATTCGATGTAAGTAATCTTCAGGCATTGACCATCTTGCTATGA |
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Protein seq | MAAAAAMSTIPRTPAVTAASLPPAAGSRSSCGGVVGVRVPNLHRQRFPRPRSSAPWASSRSSIRILIIILRARSVSPRSGLNRFVESFDKFDVSNLQALTILL |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNip_11g0243750 | OsNip_11t0243750-01 | Chr11 | 7716589 | 7717070 | - | RAP2018-11-26 | ||
CDS seq | ATGGCGGCGGCGGCGGCGATGAGTACGATACCCCGTACACCGGCGGTAACGGCAGCTTCCCTCCCTCCTGCGGCCGGCTCCCGGAGCTCCTGCGGCGGGGTCGTCGGCGTCCGTGTCCCCAATCTGCATCGCCAGCGTTTCCCACGACCTCGATCCTCTGCGCCTTGGGCGTCATCCCGTTCATCGATCCGCATCCTCATCATCATCTTGAGGGCTCGATCTGTGTCGCCGCGCTCCGGCCTTAATCGATTCGTTGAGTCATTTGATAAATTCGATGTAAGTAATCTTCAGGCATTGACCATCTTGCTATGA
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Protein seq | MAAAAAMSTIPRTPAVTAASLPPAAGSRSSCGGVVGVRVPNLHRQRFPRPRSSAPWASSRSSIRILIIILRARSVSPRSGLNRFVESFDKFDVSNLQALTILL |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.461237 | 1.042342 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g13940 | RBH | 0.095463 | 0.084397 | 0.177484 |
Nipponbare | IRGSP 1.0 | RAP-db | Os11g0243750 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008790 | RBH | 0.110291 | 1.661641 | 1.474589 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008680 | RBH | 0.074559 | 1.223976 | 0.928788 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008660 | RBH | 0.578641 | 4.067461 | 2.490123 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008530 | RBH | 0.0 | 0.032560 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008600 | RBH | 1.037248 | 3.654542 | 3.168112 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0117100 | RBH | 0.652459 | 1.500245 | 1.35839 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008690 | RBH | 0.025478 | 0.040422 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008780 | RBH | 0.104925 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008700 | RBH | 0.0 | 2.755374 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008700 | RBH | 0.000000 | 0.804332 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008740 | RBH | 0.118923 | 0.268710 | 0.614158 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008620 | RBH | 0.000000 | 4.252161 | 0.000000 |