Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0238700 | OGI:11021900 | 13/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:7406417-7408213 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAAACCTCTTAACAAAAGTGACTCTGAAAATTTATTTCTCACAAGGACTTTTGGTGCTGAAAAAAAATGCCCCAGTCAGCTGGAAGGGATTATCAGTGATATACTTTATAAATGTGATGGTTTGCCTTTAGCCATTATTACTATAGCTAGCTTGTTAGCTGATAAACCAAGAACAAGGGAAGAATGGGAGAGAGTTCTGAATTATATTGTTTCTACTAGTGAGAAGGATAATGACCTGGAGGTAATGAACAAGATACTGTTTATGAGTTACAATGATCTACCACATCATATGAAAAGTTGTTTACTGCACCTCGGTACGTTTCCTGAGGATCACAAGATTGGTAAGGATGTGCTGGTATGGAGATGGATAGCTGAAGGATTCATAACAAAAAAACAAGGCTTTACTTTGCAGGAAGTTGCAGAGAGTTATTTCTACGAGCTGATAAATAGGAGCTTGGTCCAACACATACAGATCATGCCAAATGGAGAAGATGGATGTCGAGTCCATGATATAGTTTTGAACTTCATCATCCATCAGTCAACTGAAGAAAATTTTTTAACCAAGTTGGATTGTCAGGATCACCCATCTTCACGTAAACGGATTCGCCGGCTTTTAGTTGGGAACAAAGAAGAATATACAAGGGCAAAATCACAAGGAACCATGAATTCGTCTAACCTTCGTTCAATTAACATATACCATGTTGATGGCCATATGATGTCTCCTCTTTTAAACCTACCTACTCTTCGAGTGTTGAATCTAGAGCGTTGTGATCTCAGGAATAGTTATCTTGATTGCATTGTAGGTTTATTTCACCTAAGATACTTGGGGCTCCGTTGGTCAAGAATTGACTGCCTACCTGTCCAAATTGGGAAGCTAGAGTATCTGCAAACACTCGATTTACGCCATACTTCATTATTAGTGATGCCTGAAAGTATTGTTCAGCTCAAACGGTTGATGCGTCTTGTTGGACATCATCTCATATTACCGGATGGGTTCGGTAACATGGAATCTCTTCAAGAATTAGGGTTTTTAGGTTGTTGTAGAAGCTCCACAAATTTATTAAAATTTCAGAAAGATCTACAACTTTTGAGAAATTTGAGGGTGCTCAAAGTAAGGTTCTTGTCTGAAGGGGAAACAGGAAAAGAAGCAATGATACCATCCCTTTGCAAGCTTGGAGGAAACAACCTCCGGGAAGTCTATATTACCAGCTGCAATGGAAGTGGAGATTGTTTCGCAGATTCTTGGTGTCCTTCGCCGTGTTTCCTGGAAAAGTTTGTTTACAAGAGTAGTTGCAATATACATTACTTTTCCAGGTTTCCGAAGTGGATTCATCCCACACTCTCTAGATGTCTCACCTACTTGGATATCGACGTTAAACAAATGGAACGAGAACATGTACGTATTCTTGAAGATTTGCCTGCTCTTATTGTCCTACACCTAGACATAGGGGAAGCTCTCGTGTATGGAATCAGGATCAGCCATGGTGCATTCCAATGTTTGGCACGCCTACGTTTCTGCAACAGATCTGGACCTGGTTTGGTATTCAAAGGAGGCATGCCAAAGCTCGAATGGCTTAGCGTTGAATTCGGTGCAGAGAGGGCACAATCAACATATGGCAGTTTAGAGGTTGGCATCCGGCACATCACATCTCTCAAACATATCGACTTTTCTATCCTGGTGCTCACTGACGATATGGAGTGGAAAATCAAATCATCTATAAATAGCCAAGTCAAGATGCTTCCACAACGTCCTGAGGTCAATATCAAAACAGTACTCCTTCCATCTATAAAATAA
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| CDS seq | ATGAAACCTCTTAACAAAAGTGACTCTGAAAATTTATTTCTCACAAGGACTTTTGGTGCTGAAAAAAAATGCCCCAGTCAGCTGGAAGGGATTATCAGTGATATACTTTATAAATGTGATGGTTTGCCTTTAGCCATTATTACTATAGCTAGCTTGTTAGCTGATAAACCAAGAACAAGGGAAGAATGGGAGAGAGTTCTGAATTATATTGTTTCTACTAGTGAGAAGGATAATGACCTGGAGGTAATGAACAAGATACTGTTTATGAGTTACAATGATCTACCACATCATATGAAAAGTTGTTTACTGCACCTCGGTACGTTTCCTGAGGATCACAAGATTGGTAAGGATGTGCTGGTATGGAGATGGATAGCTGAAGGATTCATAACAAAAAAACAAGGCTTTACTTTGCAGGAAGTTGCAGAGAGTTATTTCTACGAGCTGATAAATAGGAGCTTGGTCCAACACATACAGATCATGCCAAATGGAGAAGATGGATGTCGAGTCCATGATATAGTTTTGAACTTCATCATCCATCAGTCAACTGAAGAAAATTTTTTAACCAAGTTGGATTGTCAGGATCACCCATCTTCACGTAAACGGATTCGCCGGCTTTTAGTTGGGAACAAAGAAGAATATACAAGGGCAAAATCACAAGGAACCATGAATTCGTCTAACCTTCGTTCAATTAACATATACCATGTTGATGGCCATATGATGTCTCCTCTTTTAAACCTACCTACTCTTCGAGTGTTGAATCTAGAGCGTTGTGATCTCAGGAATAGTTATCTTGATTGCATTGTAGGTTTATTTCACCTAAGATACTTGGGGCTCCGTTGGTCAAGAATTGACTGCCTACCTGTCCAAATTGGGAAGCTAGAGTATCTGCAAACACTCGATTTACGCCATACTTCATTATTAGTGATGCCTGAAAGTATTGTTCAGCTCAAACGGTTGATGCGTCTTGTTGGACATCATCTCATATTACCGGATGGGTTCGGTAACATGGAATCTCTTCAAGAATTAGGGTTTTTAGGTTGTTGTAGAAGCTCCACAAATTTATTAAAATTTCAGAAAGATCTACAACTTTTGAGAAATTTGAGGGTGCTCAAAGTAAGGTTCTTGTCTGAAGGGGAAACAGGAAAAGAAGCAATGATACCATCCCTTTGCAAGCTTGGAGGAAACAACCTCCGGGAAGTCTATATTACCAGCTGCAATGGAAGTGGAGATTGTTTCGCAGATTCTTGGTGTCCTTCGCCGTGTTTCCTGGAAAAGTTTGTTTACAAGAGTAGTTGCAATATACATTACTTTTCCAGGTTTCCGAAGTGGATTCATCCCACACTCTCTAGATGTCTCACCTACTTGGATATCGACGTTAAACAAATGGAACGAGAACATGTACGTATTCTTGAAGATTTGCCTGCTCTTATTGTCCTACACCTAGACATAGGGGAAGCTCTCGTGTATGGAATCAGGATCAGCCATGGTGCATTCCAATGTTTGGCACGCCTACGTTTCTGCAACAGATCTGGACCTGGTTTGGTATTCAAAGGAGGCATGCCAAAGCTCGAATGGCTTAGCGTTGAATTCGGTGCAGAGAGGGCACAATCAACATATGGCAGTTTAGAGGTTGGCATCCGGCACATCACATCTCTCAAACATATCGACTTTTCTATCCTGGTGCTCACTGACGATATGGAGTGGAAAATCAAATCATCTATAAATAGCCAAGTCAAGATGCTTCCACAACGTCCTGAGGTCAATATCAAAACAGTACTCCTTCCATCTATAAAATAA
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| Protein seq | MKPLNKSDSENLFLTRTFGAEKKCPSQLEGIISDILYKCDGLPLAIITIASLLADKPRTREEWERVLNYIVSTSEKDNDLEVMNKILFMSYNDLPHHMKSCLLHLGTFPEDHKIGKDVLVWRWIAEGFITKKQGFTLQEVAESYFYELINRSLVQHIQIMPNGEDGCRVHDIVLNFIIHQSTEENFLTKLDCQDHPSSRKRIRRLLVGNKEEYTRAKSQGTMNSSNLRSINIYHVDGHMMSPLLNLPTLRVLNLERCDLRNSYLDCIVGLFHLRYLGLRWSRIDCLPVQIGKLEYLQTLDLRHTSLLVMPESIVQLKRLMRLVGHHLILPDGFGNMESLQELGFLGCCRSSTNLLKFQKDLQLLRNLRVLKVRFLSEGETGKEAMIPSLCKLGGNNLREVYITSCNGSGDCFADSWCPSPCFLEKFVYKSSCNIHYFSRFPKWIHPTLSRCLTYLDIDVKQMEREHVRILEDLPALIVLHLDIGEALVYGIRISHGAFQCLARLRFCNRSGPGLVFKGGMPKLEWLSVEFGAERAQSTYGSLEVGIRHITSLKHIDFSILVLTDDMEWKIKSSINSQVKMLPQRPEVNIKTVLLPSIK |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0238700 | OsNip_11t0238700-00 | Chr11 | 7406417 | 7408213 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAACCTCTTAACAAAAGTGACTCTGAAAATTTATTTCTCACAAGGACTTTTGGTGCTGAAAAAAAATGCCCCAGTCAGCTGGAAGGGATTATCAGTGATATACTTTATAAATGTGATGGTTTGCCTTTAGCCATTATTACTATAGCTAGCTTGTTAGCTGATAAACCAAGAACAAGGGAAGAATGGGAGAGAGTTCTGAATTATATTGTTTCTACTAGTGAGAAGGATAATGACCTGGAGGTAATGAACAAGATACTGTTTATGAGTTACAATGATCTACCACATCATATGAAAAGTTGTTTACTGCACCTCGGTACGTTTCCTGAGGATCACAAGATTGGTAAGGATGTGCTGGTATGGAGATGGATAGCTGAAGGATTCATAACAAAAAAACAAGGCTTTACTTTGCAGGAAGTTGCAGAGAGTTATTTCTACGAGCTGATAAATAGGAGCTTGGTCCAACACATACAGATCATGCCAAATGGAGAAGATGGATGTCGAGTCCATGATATAGTTTTGAACTTCATCATCCATCAGTCAACTGAAGAAAATTTTTTAACCAAGTTGGATTGTCAGGATCACCCATCTTCACGTAAACGGATTCGCCGGCTTTTAGTTGGGAACAAAGAAGAATATACAAGGGCAAAATCACAAGGAACCATGAATTCGTCTAACCTTCGTTCAATTAACATATACCATGTTGATGGCCATATGATGTCTCCTCTTTTAAACCTACCTACTCTTCGAGTGTTGAATCTAGAGCGTTGTGATCTCAGGAATAGTTATCTTGATTGCATTGTAGGTTTATTTCACCTAAGATACTTGGGGCTCCGTTGGTCAAGAATTGACTGCCTACCTGTCCAAATTGGGAAGCTAGAGTATCTGCAAACACTCGATTTACGCCATACTTCATTATTAGTGATGCCTGAAAGTATTGTTCAGCTCAAACGGTTGATGCGTCTTGTTGGACATCATCTCATATTACCGGATGGGTTCGGTAACATGGAATCTCTTCAAGAATTAGGGTTTTTAGGTTGTTGTAGAAGCTCCACAAATTTATTAAAATTTCAGAAAGATCTACAACTTTTGAGAAATTTGAGGGTGCTCAAAGTAAGGTTCTTGTCTGAAGGGGAAACAGGAAAAGAAGCAATGATACCATCCCTTTGCAAGCTTGGAGGAAACAACCTCCGGGAAGTCTATATTACCAGCTGCAATGGAAGTGGAGATTGTTTCGCAGATTCTTGGTGTCCTTCGCCGTGTTTCCTGGAAAAGTTTGTTTACAAGAGTAGTTGCAATATACATTACTTTTCCAGGTTTCCGAAGTGGATTCATCCCACACTCTCTAGATGTCTCACCTACTTGGATATCGACGTTAAACAAATGGAACGAGAACATGTACGTATTCTTGAAGATTTGCCTGCTCTTATTGTCCTACACCTAGACATAGGGGAAGCTCTCGTGTATGGAATCAGGATCAGCCATGGTGCATTCCAATGTTTGGCACGCCTACGTTTCTGCAACAGATCTGGACCTGGTTTGGTATTCAAAGGAGGCATGCCAAAGCTCGAATGGCTTAGCGTTGAATTCGGTGCAGAGAGGGCACAATCAACATATGGCAGTTTAGAGGTTGGCATCCGGCACATCACATCTCTCAAACATATCGACTTTTCTATCCTGGTGCTCACTGACGATATGGAGTGGAAAATCAAATCATCTATAAATAGCCAAGTCAAGATGCTTCCACAACGTCCTGAGGTCAATATCAAAACAGTACTCCTTCCATCTATAAAATAA
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| Protein seq | MKPLNKSDSENLFLTRTFGAEKKCPSQLEGIISDILYKCDGLPLAIITIASLLADKPRTREEWERVLNYIVSTSEKDNDLEVMNKILFMSYNDLPHHMKSCLLHLGTFPEDHKIGKDVLVWRWIAEGFITKKQGFTLQEVAESYFYELINRSLVQHIQIMPNGEDGCRVHDIVLNFIIHQSTEENFLTKLDCQDHPSSRKRIRRLLVGNKEEYTRAKSQGTMNSSNLRSINIYHVDGHMMSPLLNLPTLRVLNLERCDLRNSYLDCIVGLFHLRYLGLRWSRIDCLPVQIGKLEYLQTLDLRHTSLLVMPESIVQLKRLMRLVGHHLILPDGFGNMESLQELGFLGCCRSSTNLLKFQKDLQLLRNLRVLKVRFLSEGETGKEAMIPSLCKLGGNNLREVYITSCNGSGDCFADSWCPSPCFLEKFVYKSSCNIHYFSRFPKWIHPTLSRCLTYLDIDVKQMEREHVRILEDLPALIVLHLDIGEALVYGIRISHGAFQCLARLRFCNRSGPGLVFKGGMPKLEWLSVEFGAERAQSTYGSLEVGIRHITSLKHIDFSILVLTDDMEWKIKSSINSQVKMLPQRPEVNIKTVLLPSIK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0237900 | SBH | 0.262520 | 1.201386 | 0.835943 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g13510 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0238700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008540 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008430 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008420 | SBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008270 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008380 | RBH | 0.000000 | 2.403698 | 0.294278 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0113500 | RBH | 0.126316 | 6.1266585 | 0.0116775 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008410 | RBH | 0.153732 | 0.876456 | 0.105843 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0117700 | SBH | 0.0470635 | 0.118865 | 0.0612595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008470 | RBH | 0.0 | 0.056802 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008560 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008500 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008350 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008500 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008360 | RBH | 0.0 | 0.0 | 0.0 |
