Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0230400 | OGI:11020640 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:6925201-6927223 | ||||||||
| Gene Symbol | OsSRP-GAA, OrysaZ6a, OsSRP-PSG, OrysaZ8 | ||||||||||
| DNA seq | CGAGGGGATATCTGCTCGAGGGACTAGAAACCAATCCCGTCCTTCACCCATCGCGTTGGTTCGCCTGGCCGCCTCCGCGTCTCCTCCGACCTCCGCGCGGCCGGCCGGCCGTCCACCCGCGGCTCCGCTCCGGCTGTGCCCGTCGCGCGCGCGCTTCCTCTAGGGTTAGGGTTTTCCGTCTCCGGCCGCCAGGTTTGCTGCCGCGGCCGTCGCCGTCCAATGGGGAGCCCGCCGCCGCCGCGCCGCCGGTGCTGCGCGATCCAGGGTTTCGTGGTGTTGTTCCTCGTCTACGTGCTCGCGGTGCTTGTGCTCGCCGGCGGCGAGCTCTTCCGCGACGACCACCCGCTCGACCTCCGCTTCCCCTGTACGGCTTTTATCTTTTCCCCCTTTGTTTCTTTCTTCTCTCTGGAATTGGATCGATTTGTTCGTTGTTTTCATGGCGTTAATCTCCTCGTTTCTGATCTGTCTAGCCTCTCCTGGAATTGGATCCTCCTCCTCCTCCTCCGCTCGATTCCTCCTCTCGCCTCGCTCGTTGCTGCTTCGTCTCGGGGAGATCGCGAGCCGTCGGGGCAGGTGGTGGCGACCGGAATCGGACTCTCCGACGAGCGGCGGACGAAAGGACGGGAACAGTTCGACCACGGAGGCGTGTTCGCGGCGGTGCGCCGCCTCCGGCCTGATGGGGATATCGCTGCGCCTCGCCGAGCAGTTCTCCGCGGAGGAGGACGGCGGCGGCGGCGGCGGCAACCTCGTCTTCTCGCCGCTGTCCATCTACTCCGCGCTCTCCGTGGTCACCGCCGGCGCGCGGGGCACCACCCTGACCGAGCTGCTCGCCGCCCTCGGCGCGCCGTCCCGCGACGCGCTCGCCAAGAACGCCGCCGAGATCGCGCGCGCCCTCGCCGGCGGCACGGCGACGGGCGGGCCCCGCGTCGCGCACGCGTGCGGCCTCTGGCACGAGCGGACGAGGTCGCTCAAGCTGGCGTTCCGGGACGCCGCCGCCGCCTCCTTCAACGCCGCAACCCGCGCCGTCGACTTCCTCGCCAACGTAAGCCAATAACATTGTGACGCAATCTATGTCAATCTAATGTCACTAACCCACCCGCCATTGATCTCCTCTCGATCAATCCTCCATGCAGCCGGAAGAAGCGAGGAAGGAGATCAACAGCTGGGTTGCGGCCGCGACGGAGAACCTCATCGACACGATCCTCCCGCCGGGGTCGGTGAGCACGGACACGGGTCTCGTGGTCACCAGCGCCATCTACTTCAACGGCACATGGCAGACGCCATTCCGAAAGCAGGACACCAAGAAGGACAAGTTCCACCTCCTCGACGGCCACGGCACCGTCGACGCGGACTTCATGCGCACCGGCGAGGACCAGTACATCGCGGCGCACGACGGGTTCAAGGTGCTCAAGATGCCGTACGCCCACGACCACGCGGCGCCACAACCCTCGCCGCGGTACTACTCCATGTACATCCTCCTCCCCGACGAGCGCGACGGCCTGTCCAGCCTCGAGGACAGGATGGCGGCGGCCGGTGGCGGCGGCGGCGGCGAGGGCTTCCTCAGCGAGCACATGCCGGTGCGACGCGTCGAGGTCGGCGAGTTCAGGATCCCCAGGTTCAAGCTCTCCTTCAGCCGCAGCGTCGTGCGCGCGCTCCGGGGTGTCGGGGTGAACGCCGTGTTCGATCGGGCCGAGCTGCCGGACATGATCGAGGGCGAGCCGCTGCGCGTGTCGGACGTCCTGCACAAGGCCGTGATCGAGGTGAACGAGGAGGGCACCGAGGCGGCGGCGGCCACGGCAGTGTTAATGGAAGGTGCGGCGCGGTATGCGCCGCCGCCGCCGCCAAGGGAGGACTTCGTCGCCGACCATCCGTTCGCCTTCTTTGTGGTGGAGGAATCGTCGGGCGCGGTACTCTTCGCGGGGCATGTCGTTGACCCGACGAAATCTTAGTCAACAGAAGTATAGTATCATTGTTTTTGGAAATTGCTCGAGTCTTAACGCTAATGTCTACTTCTATCCGTCCC
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| CDS seq | ATGGCGTTAATCTCCTCGTTTCTGATCTGTCTAGCCTCTCCTGGAATTGGATCCTCCTCCTCCTCCTCCGCTCGATTCCTCCTCTCGCCTCGCTCGTTGCTGCTTCGTCTCGGGGAGATCGCGAGCCGTCGGGGCAGGTGGTGGCGACCGGAATCGGACTCTCCGACGAGCGGCGGACGAAAGGACGGGAACAGTTCGACCACGGAGGCGTGTTCGCGGCGGTGCGCCGCCTCCGGCCTGATGGGGATATCGCTGCGCCTCGCCGAGCAGTTCTCCGCGGAGGAGGACGGCGGCGGCGGCGGCGGCAACCTCGTCTTCTCGCCGCTGTCCATCTACTCCGCGCTCTCCGTGGTCACCGCCGGCGCGCGGGGCACCACCCTGACCGAGCTGCTCGCCGCCCTCGGCGCGCCGTCCCGCGACGCGCTCGCCAAGAACGCCGCCGAGATCGCGCGCGCCCTCGCCGGCGGCACGGCGACGGGCGGGCCCCGCGTCGCGCACGCGTGCGGCCTCTGGCACGAGCGGACGAGGTCGCTCAAGCTGGCGTTCCGGGACGCCGCCGCCGCCTCCTTCAACGCCGCAACCCGCGCCGTCGACTTCCTCGCCAACCCGGAAGAAGCGAGGAAGGAGATCAACAGCTGGGTTGCGGCCGCGACGGAGAACCTCATCGACACGATCCTCCCGCCGGGGTCGGTGAGCACGGACACGGGTCTCGTGGTCACCAGCGCCATCTACTTCAACGGCACATGGCAGACGCCATTCCGAAAGCAGGACACCAAGAAGGACAAGTTCCACCTCCTCGACGGCCACGGCACCGTCGACGCGGACTTCATGCGCACCGGCGAGGACCAGTACATCGCGGCGCACGACGGGTTCAAGGTGCTCAAGATGCCGTACGCCCACGACCACGCGGCGCCACAACCCTCGCCGCGGTACTACTCCATGTACATCCTCCTCCCCGACGAGCGCGACGGCCTGTCCAGCCTCGAGGACAGGATGGCGGCGGCCGGTGGCGGCGGCGGCGGCGAGGGCTTCCTCAGCGAGCACATGCCGGTGCGACGCGTCGAGGTCGGCGAGTTCAGGATCCCCAGGTTCAAGCTCTCCTTCAGCCGCAGCGTCGTGCGCGCGCTCCGGGGTGTCGGGGTGAACGCCGTGTTCGATCGGGCCGAGCTGCCGGACATGATCGAGGGCGAGCCGCTGCGCGTGTCGGACGTCCTGCACAAGGCCGTGATCGAGGTGAACGAGGAGGGCACCGAGGCGGCGGCGGCCACGGCAGTGTTAATGGAAGGTGCGGCGCGGTATGCGCCGCCGCCGCCGCCAAGGGAGGACTTCGTCGCCGACCATCCGTTCGCCTTCTTTGTGGTGGAGGAATCGTCGGGCGCGGTACTCTTCGCGGGGCATGTCGTTGACCCGACGAAATCTTAG
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| Protein seq | MALISSFLICLASPGIGSSSSSSARFLLSPRSLLLRLGEIASRRGRWWRPESDSPTSGGRKDGNSSTTEACSRRCAASGLMGISLRLAEQFSAEEDGGGGGGNLVFSPLSIYSALSVVTAGARGTTLTELLAALGAPSRDALAKNAAEIARALAGGTATGGPRVAHACGLWHERTRSLKLAFRDAAAASFNAATRAVDFLANPEEARKEINSWVAAATENLIDTILPPGSVSTDTGLVVTSAIYFNGTWQTPFRKQDTKKDKFHLLDGHGTVDADFMRTGEDQYIAAHDGFKVLKMPYAHDHAAPQPSPRYYSMYILLPDERDGLSSLEDRMAAAGGGGGGEGFLSEHMPVRRVEVGEFRIPRFKLSFSRSVVRALRGVGVNAVFDRAELPDMIEGEPLRVSDVLHKAVIEVNEEGTEAAAATAVLMEGAARYAPPPPPREDFVADHPFAFFVVEESSGAVLFAGHVVDPTKS |
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| Function | Putative serpin-Z6A [UniProtKB/Swiss-Prot:Q53Q31] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0230400 | OsNip_11t0230400-00 | Chr11 | 6925637 | 6927149 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGTTAATCTCCTCGTTTCTGATCTGTCTAGCCTCTCCTGGAATTGGATCCTCCTCCTCCTCCTCCGCTCGATTCCTCCTCTCGCCTCGCTCGTTGCTGCTTCGTCTCGGGGAGATCGCGAGCCGTCGGGGCAGGTGGTGGCGACCGGAATCGGACTCTCCGACGAGCGGCGGACGAAAGGACGGGAACAGTTCGACCACGGAGGCGTGTTCGCGGCGGTGCGCCGCCTCCGGCCTGATGGGGATATCGCTGCGCCTCGCCGAGCAGTTCTCCGCGGAGGAGGACGGCGGCGGCGGCGGCGGCAACCTCGTCTTCTCGCCGCTGTCCATCTACTCCGCGCTCTCCGTGGTCACCGCCGGCGCGCGGGGCACCACCCTGACCGAGCTGCTCGCCGCCCTCGGCGCGCCGTCCCGCGACGCGCTCGCCAAGAACGCCGCCGAGATCGCGCGCGCCCTCGCCGGCGGCACGGCGACGGGCGGGCCCCGCGTCGCGCACGCGTGCGGCCTCTGGCACGAGCGGACGAGGTCGCTCAAGCTGGCGTTCCGGGACGCCGCCGCCGCCTCCTTCAACGCCGCAACCCGCGCCGTCGACTTCCTCGCCAACCCGGAAGAAGCGAGGAAGGAGATCAACAGCTGGGTTGCGGCCGCGACGGAGAACCTCATCGACACGATCCTCCCGCCGGGGTCGGTGAGCACGGACACGGGTCTCGTGGTCACCAGCGCCATCTACTTCAACGGCACATGGCAGACGCCATTCCGAAAGCAGGACACCAAGAAGGACAAGTTCCACCTCCTCGACGGCCACGGCACCGTCGACGCGGACTTCATGCGCACCGGCGAGGACCAGTACATCGCGGCGCACGACGGGTTCAAGGTGCTCAAGATGCCGTACGCCCACGACCACGCGGCGCCACAACCCTCGCCGCGGTACTACTCCATGTACATCCTCCTCCCCGACGAGCGCGACGGCCTGTCCAGCCTCGAGGACAGGATGGCGGCGGCCGGTGGCGGCGGCGGCGGCGAGGGCTTCCTCAGCGAGCACATGCCGGTGCGACGCGTCGAGGTCGGCGAGTTCAGGATCCCCAGGTTCAAGCTCTCCTTCAGCCGCAGCGTCGTGCGCGCGCTCCGGGGTGTCGGGGTGAACGCCGTGTTCGATCGGGCCGAGCTGCCGGACATGATCGAGGGCGAGCCGCTGCGCGTGTCGGACGTCCTGCACAAGGCCGTGATCGAGGTGAACGAGGAGGGCACCGAGGCGGCGGCGGCCACGGCAGTGTTAATGGAAGGTGCGGCGCGGTATGCGCCGCCGCCGCCGCCAAGGGAGGACTTCGTCGCCGACCATCCGTTCGCCTTCTTTGTGGTGGAGGAATCGTCGGGCGCGGTACTCTTCGCGGGGCATGTCGTTGACCCGACGAAATCTTAG
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| Protein seq | MALISSFLICLASPGIGSSSSSSARFLLSPRSLLLRLGEIASRRGRWWRPESDSPTSGGRKDGNSSTTEACSRRCAASGLMGISLRLAEQFSAEEDGGGGGGNLVFSPLSIYSALSVVTAGARGTTLTELLAALGAPSRDALAKNAAEIARALAGGTATGGPRVAHACGLWHERTRSLKLAFRDAAAASFNAATRAVDFLANPEEARKEINSWVAAATENLIDTILPPGSVSTDTGLVVTSAIYFNGTWQTPFRKQDTKKDKFHLLDGHGTVDADFMRTGEDQYIAAHDGFKVLKMPYAHDHAAPQPSPRYYSMYILLPDERDGLSSLEDRMAAAGGGGGGEGFLSEHMPVRRVEVGEFRIPRFKLSFSRSVVRALRGVGVNAVFDRAELPDMIEGEPLRVSDVLHKAVIEVNEEGTEAAAATAVLMEGAARYAPPPPPREDFVADHPFAFFVVEESSGAVLFAGHVVDPTKS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0230400 | OsNip_11t0230400-01 | Chr11 | 6925201 | 6927223 | + | IsoSeq | ||
| CDS seq | GAGGGGATATCTGCTCGAGGGACTAGAAACCAATCCCGTCCTTCACCCATCGCGTTGGTTCGCCTGGCCGCCTCCGCGTCTCCTCCGACCTCCGCGCGGCCGGCCGGCCGTCCACCCGCGGCTCCGCTCCGGCTGTGCCCGTCGCGCGCGCGCTTC |
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| Protein seq | EGISARGTRNQSRPSPIALVRLAASASPPTSARPAGRPPAAPLRLCPSRARF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 3.140001 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0230700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g12410 | RBH | 0.0 | 0.0 | 0.606982 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0230400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008180 | RBH | 0.0 | 0.0 | 0.332927 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008090 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008010 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007910 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007950 | RBH | 0.0 | 0.0 | 0.310464 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0106600 | RBH | 0.0426165 | 0.4187475 | 0.1890115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007990 | RBH | 0.0 | 0.0 | 0.028020 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0113200 | SBH | 0 | 0.0122895 | 0.0305025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008060 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008130 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008100 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008010 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008090 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008130 | RBH | 0.0 | 0.0 | 0.101193 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007950 | RBH | 0.0 | 0.0 | 0.000000 |
