Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0229400 | OGI:11019820 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:6878623-6884810 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGGTTTCTTCTGCTAGTTCAGTGTGGATGCTGCTAAGCGCGTGGGACTTGGTCTCAAGTCGTCGCAGGCTAAAGAAGTTCAGATCAAGGCGAGGGAGAGAGAGGGGAGTAGCCTCTCGACCTCCAGAAATCATCATCTGACTAGCTCTGCGCTTCGATGGATTAGCTGACGAAAGAAGACCCTTGTTCTGATTTACAGGTGAGATTCTATCTCTTGCTGCTTGCAGCTCTAGCTCGAAGATCTGTACTGAATCTTCTTGTATATTTTTTGGTGCCTTAGAGACTCTCAGATCTCGAATAGTTTTCCTTCTTTTTTTTTGGTCTGGTTGAAAGTTCTTCAGTTTCTGGCGAGAATTTTCCTCCTGGGATTAGAGATTATCAGTTCTTTTTTGCTTGAAAATCTTGGGGATTCGTTATGAATTTGAGCGAGCATCACATAGAACAGCAGTGAACAGTTCTTTTTGTTCCAAAAAAATAACAGTCGATCCTCTCACCGCCAAAAGCGAGCTTTTTTTCTTTTTTGTTTTGGTCTAGTTCTGCATTTTGGAGATTTCTGTATATGCTGGCAGTATAACTATATCAATTTCAACATCACATTGTTTACTTCTGATGTTTTGTTGGAAGAATAATATTTTGTTTTTAACTTTGGTGCAGGGTTTTCATCACATTATTTCGCCATCTGCTGCAATAATACTTATAACTACAAGCTCAAGTCAAGCCCCCACGAGGTGATCAGTCTCAAATGTTTGCATCCTCTCATATATTTATTTCTCTGTGGCCCATGTTATATCGAGTTGCTACGGCCATCTGATTCAGTTTAGATAAAGAATTCTCATTAGTAACAATCCTAATAATTTCACTGCAATGTAGTTTTACATCACCCTGTACTTGGGTGAAAGCATAATGTTACAGAATAAAATAAATGTTACAGGATAAATTAGTTTGGCGACATAAAGAGATAGAAACATGCCAACTTGGTTCCTGGGTCCTTGGCTAAACTGCTGATGCTCATGCATTTAGCAGAGGCCACATTAACTGATTGTCCAAAAAACATCAGTTTATTTTCAGTTCAACTCTCACACAAACACAAGCCTCAGAGCTTCAGTGAAGTTCTGTTGTAAAGAAAGCATTTCTACAAATAGAGCATTGCACCAGTAAAGGATTCAACCAAAATAACCATTCTACATCTTGGTATAAAGAAATTTGAAGTTCTGAACCCACAAGTACATCCAATGGTCGTGTCTTTAGATATGAAACTGCTTTGAACTTTAAAAAGCTTTTTGGCTAGGCAGAGGGTAAGATCCAACCACTTGAGAAGTTCAGATTGGTGGGAAACAATGACTAATTTCCATGACATTCAGAAAGGATTGATTTTACTAATTCCCTAAGGGTAAAAGACAGCTATAAACTACTTCCTCAGTTTCACAATGTAAGTCATTCTAGCATTTTCCACATTCATATTGATGCTAATATCTATATATATCTAAATTCATTAGCATCAATATGAATGTGGAAAATGCTAGAATGACTTGCATTGTGAATATCTAAATTCATTAGCATCAATATGAATATGGAAAATGCTAGAATGACTTACATTGTGAAACGGAGGGAGTATAAAATAAGACTGCACCATGCAATACCTCTTCCAATAGAACCAGGGTCTTTCAATGAACATAACAATTTTTAAGGAGCAACAGTTTGCCACAGGCTTAGAAATGAAAATGGATTAGGATCACCATCTTGCAATAGACTTCCCCATCTCCAGCACTATTTCTGGATTAAACAGAACAGGAAATGACCGCAAATGCCATTCCTCCAGTAAGGACCCTTCAGGATTGGTTCATGATGAACTTGGACACTATATAATTCCACACCACAAACAGAACAGGTTATGGCCGCTTGGTTGAGAAATTCGTCCATAACCTTAGATATGAAAGGAAATATTATATTGGAATTTAGGCAACATTATCATCCTTTGCTTTGCACTTCTAAGAAAGTTAATTTCCTACTTTGGATAAAGAATATATATACCTTTTGATAAGTAGGTCCACCTGATAATGCATAAGAATAACAATCTTGTTACGAACAAGAAAGCAGTTTGTTAAGAAAGATGAAATAGCAGAAATCATTGGGGAAACATGGTAACATCACCTCTTGAAGAAAACATAGATGATTTCCAACAAGACAATTAAGACATAATTCATTCAATTAGTAGAAGAAATCATAGCACTGGGATTTAAATCAATAAGAAGTAGGTCTCTCCAGCTAACGAATACAATGAAAATTATGAACTTTACGGGCACAAAAATGCTTACCTTCAGTGACATATAACACCATAAATGGTCCAAAACTATTTACCTGATGAAATTACGAGTGTTGCAGGCGCTTCAAACAAAACAGTTCTCAAGTATCAGCTATATCCACCAAAAGTGATCAAATATGTCTGATGTGTGATCATCATTGTGTTATTTTTTTCTTTTTTACAAACCAGAATAACCAAGTAGTACTGTAGAGTACATAACAAATATATTCAAGAATATCAACAAGTAAAAAGGAGAGCAGTCAAAGGATAGTACCTTTCAATTCTCTTTTGCAACATTGATCTTACCCAGTACCTGAATCAAAAAGCACCAGCATAATCACCAGTACTATCTATATTTTTCTTAAACATATAACTTGGATTGAATTCAAAGTTCAAACTTTAATTTTTTATGTAACAGTATACGTTATGGATGTTGATTCATGGATAGGGTAAGGGTCCGAAGAACAGGGGATAGGACGTCCACCCTCAGTTAGCACCAGCAGAGCTTCTCTCGTTCAAAGCAAAGAGAGGCTCTGAGACTTATTGGACTTTAGAGATTCAGTGTTAGGTGATAATGGGGTACATGGGGTCCCTTTATATATGGAGGGCTGACTTAGCATCCAAGGAATTAATCTGTAATATTATACAAACCAATCCAATCTCTATCTCTATTTTAGTAACAAACCTCATCTCTTTCCAGCTAGGTAATCTCCACGCTTTATTTGACTGAATCCTAATTTGCTAATTAACCTGATATGTAGCTGTAAGGTCCTGCTCACAGTCATAAAAAGTTCATAATTCATAGTTTCATCTTTTCCAATACTTCAGTTTCAAGTTTGAACATCCTGCCCCTGGATTCTACTAGTTTACACCAATTTGCTGCTGAATCATGTAACACGAACTGTTTTCTTTTGTTCAGCACAAATGGCAGAGGCTGTAATGCTTGTGGTCTCAAAGATTGGCTCCGTTTTATTAGAGGAAATCACCTTCACAGTGATAAGCAAGCTATCTGAAAAGATTACTAATCTGAAGGAATTGCCGGTCAAGGTTAAGGAAATAGGGAAAGAACTGAACATGATGAACACTTTTATAAAAAGGATAAGTACAACCGATCTTACAGATGATGTCAAGGCCTGGATTGCTGAGGTGCGAGAGCTGGCCCACTGTGTTGAGGATGTACTTGATAAATATTCATATCATGCTCTTAAATTGGATGAAGAAAATGCTGTGAAACAAATCTTCACCAAAGCTAATTATATCAAAGTTTTCAGCGAAATTGCTGATGAGATTACCCAGATCGAGGGGAAAATTGAGAATGCTGTAAAGCGGAAAGATCGGTGGCTGCAACTGTCTGAGCTTACACCCTACCCACTGGCTGATGTTCAAAGAAAACAATCTCGAGATTGTCTACTGGAACTTGTTCAAGATGATCTTGTTGGTATTGAAGATAACAGGAAACAATTGACCAAATGGTTGTACTCCGATGAGCAAGGCAGCACAGTGATAACAGTATCTGGTATGGGTGGACTTGGAAAAACCACCCTGGTTGCAAATGTATACGAGCAAGAAAAGATGAACTTCAACGTTTATCATTGGATTGTCGTGTCACAAAAATATGACATAGCTGAATTGCTGAGAAAAATGTTGAGAAAATGTTGGTCTCTAGAACATACACAGCTAGCAGATTTGGACGCTCATGACTTGAAAAGTGCCATAAAGGAAAGATTAAAAGATAGTAAATGTTTGGTTGTATTGGATGATGTCTGGAACCGAGAAGTATACACTCAGATAGGGGATGCATTCCAGAACCAAAAAGCAAGTCGCATAATCATCACAACACGACAGGACCAGGTAGCATCTTTAGCAAACATAACACGGCAACTCAAACTCCTGCCATTGAAGCACAATGATGCATTTGATCTCTTATGTAGAAAGGCTTTCAATGCCAGCATGGGCTGCAAGTGCCCGCAGGAGCTTGAGAAACTGGCTGATGATATAGTAGATAGGTGCCAAGGACTGCCACTAGCAATCGTATCTATAGGTGGCCTGTTGTCTTCAATGCCGCCAACGAAATATGTCTGGAATGAAACATACAAGCAACTACGAAGTGATCTAGCAAACAACAATCATGTTCAAGCAATTCTAAATCTGAGCTACCAGGACTTACTAGGAGAACTTAGAAACTGCTTCTTGTATTGTAGTTTGTTCCCTGAAGATCATGAGTTGTCACGGGAGACCCTTGTACGGTTGTGGGTTGCAGAAGGCTTTGCAGTGCAAAAAGAACATAACACACCAGAGGAGGTGGCCGAAAGATATCTTCGGGAACTGATACAACGGAATATGCTAGAAGTTCTGGAATATGATGAGCTAGGCAGGGTTAGTAAGTGTAAGATGCATGATCTCGTACGGGACCTTGCTCTTTCTATTGCTAAAGAGGAGAAGTTCGGTTACGCAAATGATTTTGGCACCATGGTAAAGACAAACAGGGAAGTTCGCCGCCTGTCATCATGTGGATGGAAAGACAAAACTATGTTGAAAGTTAAGTTCCTGCGTCTTAGGACCCTAGTGGCACTTGGAATTACAACATCCTCCCCTCAGATGTTATCCTCAATTTTGTCTGAATCCAGCTACCTTACTGTTCTCGAGCTACAAGACTCTGAAATAACTGAAGTGCCGGCATCCATAGGAAATTTGTTTAATCTACGTTATATTGGCCTGCAACGCACTAGAGTCAAGTCACTTCCAGAGTCTATTGGGAACCTGTCCAGCCTCCACACTCTCAACATCAAACAAACCAAAATACAAAAGCTACCACGAGGCATCGTTAAGGTCAAGAAGTTGCGGCACCTTCTAGCTGACAGATATGAGGATGAAAATAAGTCAGAGTTCCGGTATTTTATTGGAGTGCAAGCACCTAAAGAGCTATCCAATCTGGAAGAACTCCAGACCCTTGAGACAGTGGAAGCCAGCAAGGACCTGGCTGAGCAGCTGAAGAAACTTATGCAACTACGGAGCGTGTGGATTGACAACATAAGTGCTGCTGACTGTGCAAATCTTTTTGCTACACTATCAAAGATGCCGCTTCTTTCTAGCTTGCTTCTATCCGCAAGTCACGAGAAGGAGACACTTTGCTTGGAAAATCTCAAGCCAAGTTCGGAAAATCTCCATAGGTTGATTATCAGAGGGTGCTGGGCAGCTGGGACACTACAGTCCCCAATATTTCGTGACCATGGGAAATTTCTCAAGTATCTGGCCATAAGCTGGTGCCATCTTCAGGAAGATTCTCTACTCCTCCTAGCACCACATGTGCCAAACCTCACCTATCTTAAACTTAACAGGGTGAGTAGTGCAAGCAGCTTGGTTCTTTCTGCAGGTTGCTTCCCACAGCTGAAGACGCTCGCCTTGAAGCGTATGCCTGATGTAAACCACTTGGAGATCATAGGCGGTGCCCTCCAGCATATTGAAGGTTTATATGTAGTGTCACTCCCAAAGCTGGACACTATCCCTGAAGGCATTGAGTCCCTTAGGTACCTGAAGAAGCTGTGGCTTTTGGGTCTGCATAAGAATTTCAGATCTCAGTGGGAAAAAAATGGAATGCAACAAAAGATGCAACATGTTCCAGAGTTGCGTGTCAAGGACTAGAAACTTGCTTGTTTTTGCCGTAATATCTGTCTGGTGAGTCTGTGTTCAGCCACACTCCAACAAATGATCAGTTTATGACAGATGAGCTAGCTGCACCACTACATCACAACCTCATTATTGGAAATAAGTCCTGAAATATTGGCTATCCTAGCCATCAGGGAACTCATTTGTCATATTTTCTATTGTAGTTTTATTTCTTCACAACTTTGCAGAATTTATGAAACCAGTCCTTTCATTGTTGAAC
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| CDS seq | ATGGCAGAGGCTGTAATGCTTGTGGTCTCAAAGATTGGCTCCGTTTTATTAGAGGAAATCACCTTCACAGTGATAAGCAAGCTATCTGAAAAGATTACTAATCTGAAGGAATTGCCGGTCAAGGTTAAGGAAATAGGGAAAGAACTGAACATGATGAACACTTTTATAAAAAGGATAAGTACAACCGATCTTACAGATGATGTCAAGGCCTGGATTGCTGAGGTGCGAGAGCTGGCCCACTGTGTTGAGGATGTACTTGATAAATATTCATATCATGCTCTTAAATTGGATGAAGAAAATGCTGTGAAACAAATCTTCACCAAAGCTAATTATATCAAAGTTTTCAGCGAAATTGCTGATGAGATTACCCAGATCGAGGGGAAAATTGAGAATGCTGTAAAGCGGAAAGATCGGTGGCTGCAACTGTCTGAGCTTACACCCTACCCACTGGCTGATGTTCAAAGAAAACAATCTCGAGATTGTCTACTGGAACTTGTTCAAGATGATCTTGTTGGTATTGAAGATAACAGGAAACAATTGACCAAATGGTTGTACTCCGATGAGCAAGGCAGCACAGTGATAACAGTATCTGGTATGGGTGGACTTGGAAAAACCACCCTGGTTGCAAATGTATACGAGCAAGAAAAGATGAACTTCAACGTTTATCATTGGATTGTCGTGTCACAAAAATATGACATAGCTGAATTGCTGAGAAAAATGTTGAGAAAATGTTGGTCTCTAGAACATACACAGCTAGCAGATTTGGACGCTCATGACTTGAAAAGTGCCATAAAGGAAAGATTAAAAGATAGTAAATGTTTGGTTGTATTGGATGATGTCTGGAACCGAGAAGTATACACTCAGATAGGGGATGCATTCCAGAACCAAAAAGCAAGTCGCATAATCATCACAACACGACAGGACCAGGTAGCATCTTTAGCAAACATAACACGGCAACTCAAACTCCTGCCATTGAAGCACAATGATGCATTTGATCTCTTATGTAGAAAGGCTTTCAATGCCAGCATGGGCTGCAAGTGCCCGCAGGAGCTTGAGAAACTGGCTGATGATATAGTAGATAGGTGCCAAGGACTGCCACTAGCAATCGTATCTATAGGTGGCCTGTTGTCTTCAATGCCGCCAACGAAATATGTCTGGAATGAAACATACAAGCAACTACGAAGTGATCTAGCAAACAACAATCATGTTCAAGCAATTCTAAATCTGAGCTACCAGGACTTACTAGGAGAACTTAGAAACTGCTTCTTGTATTGTAGTTTGTTCCCTGAAGATCATGAGTTGTCACGGGAGACCCTTGTACGGTTGTGGGTTGCAGAAGGCTTTGCAGTGCAAAAAGAACATAACACACCAGAGGAGGTGGCCGAAAGATATCTTCGGGAACTGATACAACGGAATATGCTAGAAGTTCTGGAATATGATGAGCTAGGCAGGGTTAGTAAGTGTAAGATGCATGATCTCGTACGGGACCTTGCTCTTTCTATTGCTAAAGAGGAGAAGTTCGGTTACGCAAATGATTTTGGCACCATGGTAAAGACAAACAGGGAAGTTCGCCGCCTGTCATCATGTGGATGGAAAGACAAAACTATGTTGAAAGTTAAGTTCCTGCGTCTTAGGACCCTAGTGGCACTTGGAATTACAACATCCTCCCCTCAGATGTTATCCTCAATTTTGTCTGAATCCAGCTACCTTACTGTTCTCGAGCTACAAGACTCTGAAATAACTGAAGTGCCGGCATCCATAGGAAATTTGTTTAATCTACGTTATATTGGCCTGCAACGCACTAGAGTCAAGTCACTTCCAGAGTCTATTGGGAACCTGTCCAGCCTCCACACTCTCAACATCAAACAAACCAAAATACAAAAGCTACCACGAGGCATCGTTAAGGTCAAGAAGTTGCGGCACCTTCTAGCTGACAGATATGAGGATGAAAATAAGTCAGAGTTCCGGTATTTTATTGGAGTGCAAGCACCTAAAGAGCTATCCAATCTGGAAGAACTCCAGACCCTTGAGACAGTGGAAGCCAGCAAGGACCTGGCTGAGCAGCTGAAGAAACTTATGCAACTACGGAGCGTGTGGATTGACAACATAAGTGCTGCTGACTGTGCAAATCTTTTTGCTACACTATCAAAGATGCCGCTTCTTTCTAGCTTGCTTCTATCCGCAAGTCACGAGAAGGAGACACTTTGCTTGGAAAATCTCAAGCCAAGTTCGGAAAATCTCCATAGGTTGATTATCAGAGGGTGCTGGGCAGCTGGGACACTACAGTCCCCAATATTTCGTGACCATGGGAAATTTCTCAAGTATCTGGCCATAAGCTGGTGCCATCTTCAGGAAGATTCTCTACTCCTCCTAGCACCACATGTGCCAAACCTCACCTATCTTAAACTTAACAGGGTGAGTAGTGCAAGCAGCTTGGTTCTTTCTGCAGGTTGCTTCCCACAGCTGAAGACGCTCGCCTTGAAGCGTATGCCTGATGTAAACCACTTGGAGATCATAGGCGGTGCCCTCCAGCATATTGAAGGTTTATATGTAGTGTCACTCCCAAAGCTGGACACTATCCCTGAAGGCATTGAGTCCCTTAGGTACCTGAAGAAGCTGTGGCTTTTGGGTCTGCATAAGAATTTCAGATCTCAGTGGGAAAAAAATGGAATGCAACAAAAGATGCAACATGTTCCAGAGTTGCGTGTCAAGGACTAG
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| Protein seq | MAEAVMLVVSKIGSVLLEEITFTVISKLSEKITNLKELPVKVKEIGKELNMMNTFIKRISTTDLTDDVKAWIAEVRELAHCVEDVLDKYSYHALKLDEENAVKQIFTKANYIKVFSEIADEITQIEGKIENAVKRKDRWLQLSELTPYPLADVQRKQSRDCLLELVQDDLVGIEDNRKQLTKWLYSDEQGSTVITVSGMGGLGKTTLVANVYEQEKMNFNVYHWIVVSQKYDIAELLRKMLRKCWSLEHTQLADLDAHDLKSAIKERLKDSKCLVVLDDVWNREVYTQIGDAFQNQKASRIIITTRQDQVASLANITRQLKLLPLKHNDAFDLLCRKAFNASMGCKCPQELEKLADDIVDRCQGLPLAIVSIGGLLSSMPPTKYVWNETYKQLRSDLANNNHVQAILNLSYQDLLGELRNCFLYCSLFPEDHELSRETLVRLWVAEGFAVQKEHNTPEEVAERYLRELIQRNMLEVLEYDELGRVSKCKMHDLVRDLALSIAKEEKFGYANDFGTMVKTNREVRRLSSCGWKDKTMLKVKFLRLRTLVALGITTSSPQMLSSILSESSYLTVLELQDSEITEVPASIGNLFNLRYIGLQRTRVKSLPESIGNLSSLHTLNIKQTKIQKLPRGIVKVKKLRHLLADRYEDENKSEFRYFIGVQAPKELSNLEELQTLETVEASKDLAEQLKKLMQLRSVWIDNISAADCANLFATLSKMPLLSSLLLSASHEKETLCLENLKPSSENLHRLIIRGCWAAGTLQSPIFRDHGKFLKYLAISWCHLQEDSLLLLAPHVPNLTYLKLNRVSSASSLVLSAGCFPQLKTLALKRMPDVNHLEIIGGALQHIEGLYVVSLPKLDTIPEGIESLRYLKKLWLLGLHKNFRSQWEKNGMQQKMQHVPELRVKD |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0229400 | OsNip_11t0229400-01 | Chr11 | 6878726 | 6884768 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCAGAGGCTGTAATGCTTGTGGTCTCAAAGATTGGCTCCGTTTTATTAGAGGAAATCACCTTCACAGTGATAAGCAAGCTATCTGAAAAGATTACTAATCTGAAGGAATTGCCGGTCAAGGTTAAGGAAATAGGGAAAGAACTGAACATGATGAACACTTTTATAAAAAGGATAAGTACAACCGATCTTACAGATGATGTCAAGGCCTGGATTGCTGAGGTGCGAGAGCTGGCCCACTGTGTTGAGGATGTACTTGATAAATATTCATATCATGCTCTTAAATTGGATGAAGAAAATGCTGTGAAACAAATCTTCACCAAAGCTAATTATATCAAAGTTTTCAGCGAAATTGCTGATGAGATTACCCAGATCGAGGGGAAAATTGAGAATGCTGTAAAGCGGAAAGATCGGTGGCTGCAACTGTCTGAGCTTACACCCTACCCACTGGCTGATGTTCAAAGAAAACAATCTCGAGATTGTCTACTGGAACTTGTTCAAGATGATCTTGTTGGTATTGAAGATAACAGGAAACAATTGACCAAATGGTTGTACTCCGATGAGCAAGGCAGCACAGTGATAACAGTATCTGGTATGGGTGGACTTGGAAAAACCACCCTGGTTGCAAATGTATACGAGCAAGAAAAGATGAACTTCAACGTTTATCATTGGATTGTCGTGTCACAAAAATATGACATAGCTGAATTGCTGAGAAAAATGTTGAGAAAATGTTGGTCTCTAGAACATACACAGCTAGCAGATTTGGACGCTCATGACTTGAAAAGTGCCATAAAGGAAAGATTAAAAGATAGTAAATGTTTGGTTGTATTGGATGATGTCTGGAACCGAGAAGTATACACTCAGATAGGGGATGCATTCCAGAACCAAAAAGCAAGTCGCATAATCATCACAACACGACAGGACCAGGTAGCATCTTTAGCAAACATAACACGGCAACTCAAACTCCTGCCATTGAAGCACAATGATGCATTTGATCTCTTATGTAGAAAGGCTTTCAATGCCAGCATGGGCTGCAAGTGCCCGCAGGAGCTTGAGAAACTGGCTGATGATATAGTAGATAGGTGCCAAGGACTGCCACTAGCAATCGTATCTATAGGTGGCCTGTTGTCTTCAATGCCGCCAACGAAATATGTCTGGAATGAAACATACAAGCAACTACGAAGTGATCTAGCAAACAACAATCATGTTCAAGCAATTCTAAATCTGAGCTACCAGGACTTACTAGGAGAACTTAGAAACTGCTTCTTGTATTGTAGTTTGTTCCCTGAAGATCATGAGTTGTCACGGGAGACCCTTGTACGGTTGTGGGTTGCAGAAGGCTTTGCAGTGCAAAAAGAACATAACACACCAGAGGAGGTGGCCGAAAGATATCTTCGGGAACTGATACAACGGAATATGCTAGAAGTTCTGGAATATGATGAGCTAGGCAGGGTTAGTAAGTGTAAGATGCATGATCTCGTACGGGACCTTGCTCTTTCTATTGCTAAAGAGGAGAAGTTCGGTTACGCAAATGATTTTGGCACCATGGTAAAGACAAACAGGGAAGTTCGCCGCCTGTCATCATGTGGATGGAAAGACAAAACTATGTTGAAAGTTAAGTTCCTGCGTCTTAGGACCCTAGTGGCACTTGGAATTACAACATCCTCCCCTCAGATGTTATCCTCAATTTTGTCTGAATCCAGCTACCTTACTGTTCTCGAGCTACAAGACTCTGAAATAACTGAAGTGCCGGCATCCATAGGAAATTTGTTTAATCTACGTTATATTGGCCTGCAACGCACTAGAGTCAAGTCACTTCCAGAGTCTATTGGGAACCTGTCCAGCCTCCACACTCTCAACATCAAACAAACCAAAATACAAAAGCTACCACGAGGCATCGTTAAGGTCAAGAAGTTGCGGCACCTTCTAGCTGACAGATATGAGGATGAAAATAAGTCAGAGTTCCGGTATTTTATTGGAGTGCAAGCACCTAAAGAGCTATCCAATCTGGAAGAACTCCAGACCCTTGAGACAGTGGAAGCCAGCAAGGACCTGGCTGAGCAGCTGAAGAAACTTATGCAACTACGGAGCGTGTGGATTGACAACATAAGTGCTGCTGACTGTGCAAATCTTTTTGCTACACTATCAAAGATGCCGCTTCTTTCTAGCTTGCTTCTATCCGCAAGTCACGAGAAGGAGACACTTTGCTTGGAAAATCTCAAGCCAAGTTCGGAAAATCTCCATAGGTTGATTATCAGAGGGTGCTGGGCAGCTGGGACACTACAGTCCCCAATATTTCGTGACCATGGGAAATTTCTCAAGTATCTGGCCATAAGCTGGTGCCATCTTCAGGAAGATTCTCTACTCCTCCTAGCACCACATGTGCCAAACCTCACCTATCTTAAACTTAACAGGGTGAGTAGTGCAAGCAGCTTGGTTCTTTCTGCAGGTTGCTTCCCACAGCTGAAGACGCTCGCCTTGAAGCGTATGCCTGATGTAAACCACTTGGAGATCATAGGCGGTGCCCTCCAGCATATTGAAGGTTTATATGTAGTGTCACTCCCAAAGCTGGACACTATCCCTGAAGGCATTGAGTCCCTTAGGTACCTGAAGAAGCTGTGGCTTTTGGGTCTGCATAAGAATTTCAGATCTCAGTGGGAAAAAAATGGAATGCAACAAAAGATGCAACATGTTCCAGAGTTGCGTGTCAAGGACTAG
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| Protein seq | MAEAVMLVVSKIGSVLLEEITFTVISKLSEKITNLKELPVKVKEIGKELNMMNTFIKRISTTDLTDDVKAWIAEVRELAHCVEDVLDKYSYHALKLDEENAVKQIFTKANYIKVFSEIADEITQIEGKIENAVKRKDRWLQLSELTPYPLADVQRKQSRDCLLELVQDDLVGIEDNRKQLTKWLYSDEQGSTVITVSGMGGLGKTTLVANVYEQEKMNFNVYHWIVVSQKYDIAELLRKMLRKCWSLEHTQLADLDAHDLKSAIKERLKDSKCLVVLDDVWNREVYTQIGDAFQNQKASRIIITTRQDQVASLANITRQLKLLPLKHNDAFDLLCRKAFNASMGCKCPQELEKLADDIVDRCQGLPLAIVSIGGLLSSMPPTKYVWNETYKQLRSDLANNNHVQAILNLSYQDLLGELRNCFLYCSLFPEDHELSRETLVRLWVAEGFAVQKEHNTPEEVAERYLRELIQRNMLEVLEYDELGRVSKCKMHDLVRDLALSIAKEEKFGYANDFGTMVKTNREVRRLSSCGWKDKTMLKVKFLRLRTLVALGITTSSPQMLSSILSESSYLTVLELQDSEITEVPASIGNLFNLRYIGLQRTRVKSLPESIGNLSSLHTLNIKQTKIQKLPRGIVKVKKLRHLLADRYEDENKSEFRYFIGVQAPKELSNLEELQTLETVEASKDLAEQLKKLMQLRSVWIDNISAADCANLFATLSKMPLLSSLLLSASHEKETLCLENLKPSSENLHRLIIRGCWAAGTLQSPIFRDHGKFLKYLAISWCHLQEDSLLLLAPHVPNLTYLKLNRVSSASSLVLSAGCFPQLKTLALKRMPDVNHLEIIGGALQHIEGLYVVSLPKLDTIPEGIESLRYLKKLWLLGLHKNFRSQWEKNGMQQKMQHVPELRVKD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0229400 | OsNip_11t0229400-02 | Chr11 | 6878623 | 6884810 | + | IsoSeq | ||
| CDS seq | GCGGTTTCTTCTGCTAGTTCAGTGTGGATGCTGCTAAGCGCGTGGGACTTGGTCTCAAGTCGTCGCAGGCTAAAGAAGTTCAGATCAAGGCGAGGGAGAGAGAGGGGAGTAGCCTCTCGACCTCCAGAAATCATC |
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| Protein seq | AVSSASSVWMLLSAWDLVSSRRRLKKFRSRRGRERGVASRPPEII |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.652581 | 1.132128 | 1.589644 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0229500 | RBH | 1.400738 | 1.862948 | 0.773398 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g12330 | RBH | 1.020986 | 0.695451 | 0.373596 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0229400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008130 | SBH | 0.116122 | 24.598997 | 2.131475 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008040 | SBH | 0.198904 | 6.296239 | 0.434316 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007970 | SBH | 0.305399 | 8.817049 | 1.676870 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007850 | RBH | 0.093551 | 0.271765 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007920 | RBH | 2.486020 | 5.435768 | 3.408259 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0106300 | RBH | 8.282345 | 28.8004665 | 2.5539005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007960 | SBH | 0.426523 | 0.831860 | 0.573374 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0112200 | SBH | 15.4623085 | 6.930455 | 2.7797995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008010 | SBH | 0.031650 | 0.052251 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008080 | SBH | 0.141007 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008060 | RBH | 1.234372 | 13.013433 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007960 | SBH | 0.033460 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0008040 | SBH | 0.041712 | 4.415436 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008080 | SBH | 0.107446 | 2.129446 | 0.213175 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007910 | SBH | 0.162102 | 7.456972 | 4.811376 |
