Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0213800 | OGI:11017690 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:5916975-5919022 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAAACTCACTGAAGGAGCCTTTGTTTGTTGAAGGAAGCACAACCCCAAAAGCTGTCTAACATATGCCTCACCAAGCTGCCTAGTAGAGAATATGTCAGATTGCTCTATGAAACCAAGAGCATTCCATTGGTGAATTATTTGGTCTTTTACTATGATGTGACCTTTTGGAAAGATTGCACAATATGCAAAGCATAACCTCAGGTTTGGAGGCATATTGCTGCAGCTCAATCACAAGGATGCAAGCACATTATGATATGGCAAAGATGTACATTCGAAAGTAGATGCCTTCCAGATATCGTTGTTTCTCACTGATACCCATTCATCAAACTTCATGGGTTGCAGAGTATATCCAAGTGATTTGGCTGCTAAAGCCACACCTCCACACTTAGATGCTATTTCCCTTCCTATATTCTCCAATTGTTCTTTGTCATCTCTTGCTTCAAAGACACTCTTTTCTTTTATTATTTTCCAGCACATGTCATCTGTCAGGGGTTCTAGTTTGTACGGTTCAGTGGTGCAAATCTTCTCTGCAATGTCCTTATCTCGGGTGGTTACGATGGCAATCACCCTGCTGCCCCTGCCAACCTTTAACATAGTCTTCAAATCATCTAACTGAAATTGATCCCTCTCCCATAGGTCATCTAAAACAATTAGAATCTTCCTACCGGAAAGTAGCTCATCAAGACGCCTATTTATCATCTCCCTTTCAGTCAACTGGCTCTCACTTTCCGATACTTGTGAAATTATAGAGTTGCTAATTTTGTTCAAGTCAAATGTCTGAGACACATATATCCAGACCTTAGAGTAGTCTCTGAAATTGGAAGCGTTGAAAACCAGTTTCGCCAAGGTTGTCTTGCCTATGCCTCCAATGCCATATATAGGAAGGATTACGGTCTCTTCAGTCATTCTCTTGGACAGAGAAGATATAATTATCCGCTTCTCTGCAGTCCTCCCAACAACTAGTGCTTCTTCCACCTTGGACGATGTTTCCCGTTTATCAGTAACTCTGTGCTCCTTATAGCTGCTATCTTCCGTGAATCTGAAGCTAAGATGTTGATTAGTGATCTCCTTCAGTTCATCACTTATCGTCTTCATCTTATTAGCTAGGGTAATCTTGTGAGCAATAGTCAGATTGGGGATCATCACACATCCCAACTGCAGAGAATTTACTGATTTGAGTTAGTAATAGAGGAATACTCGTCAATAAAATTTACTGTATTTCAGATGGGGAAAATCGGAAACATCCACTAGTAAATCCATAACCAAAGGGCCTGTTCAGATTGTAGCCAAAATAAAACTTATCAAATTTTAGCAGGATTTCTTATGTATTTACTAAATTTGGCAACAAAATAAACGCGAACATTTTTTTTTTGGCAATGGTATGGTTGAAAATGGTATTAATCTGAACAGCCCAAAACTGACGGCACGCAACGGCAATAAATAATACTATCTCCGTATTTTAATGTATGACGCCGTTGACTTTTAGTCCAACGTTTGACCATTCGTTTTATTTAAAAATTTTTAAATAAAACGAATGGTCAAACGTAGGTGTCATAGGGAGTAATAATAGGCAAAACCGTAATAATAATAATAATAATAATAATAATAATAAGGAATAACAAAAAGAGGCGAGAATCGCTGCAGTGGAGATTGCGCACCTTCCCCGCATCCGATTTGGAAGTGATGTTCTCCAGGTCGTCGAGCATGTCGGAGATGTCGTAGGCGGCGTCCTTGAGCCTCCTCAGCCACAGCCGCACCGCCGCGTCGCGGATCGACCGCCTCTCGGCGTCCCTGAGCACCGCGTCCACAGACTCCAGCGTGGCCTTCATCCCCTCCAGATCCTTGTCGAAGTTCCACTGGAGCATGACCCGGCCCGCTATGGCGGCGCCCAGCTTCTGGGTCGCCACCTTGAGGACGGCAGATGCAAGCATTCCCCCGACTTCCGCCACCGCCATGGCCGCCTCCCCCTCACTCCCAAGGTCTAGTTGCGTTCACTCCATGGGGAATCGGCAAACTTTAGGCTAGCTGCACTGCCACTGCAGTGCTT
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| CDS seq | ATGGCGGTGGCGGAAGTCGGGGGAATGCTTGCATCTGCCGTCCTCAAGGTGGCGACCCAGAAGCTGGGCGCCGCCATAGCGGGCCGGGTCATGCTCCAGTGGAACTTCGACAAGGATCTGGAGGGGATGAAGGCCACGCTGGAGTCTGTGGACGCGGTGCTCAGGGACGCCGAGAGGCGGTCGATCCGCGACGCGGCGGTGCGGCTGTGGCTGAGGAGGCTCAAGGACGCCGCCTACGACATCTCCGACATGCTCGACGACCTGGAGAACATCACTTCCAAATCGGATGCGGGGAAGTTGGGATGTGTGATGATCCCCAATCTGACTATTGCTCACAAGATTACCCTAGCTAATAAGATGAAGACGATAAGTGATGAACTGAAGGAGATCACTAATCAACATCTTAGCTTCAGATTCACGGAAGATAGCAGCTATAAGGAGCACAGAGTTACTGATAAACGGGAAACATCGTCCAAGGTGGAAGAAGCACTAGTTGTTGGGAGGACTGCAGAGAAGCGGATAATTATATCTTCTCTGTCCAAGAGAATGACTGAAGAGACCGTAATCCTTCCTATATATGGCATTGGAGGCATAGGCAAGACAACCTTGGCGAAACTGGTTTTCAACGCTTCCAATTTCAGAGACTACTCTAAGGTCTGGATATATGTGTCTCAGACATTTGACTTGAACAAAATTAGCAACTCTATAATTTCACAAGTATCGGAAAGTGAGAGCCAGTTGACTGAAAGGGAGATGATAAATAGGCGTCTTGATGAGCTACTTTCCGGTAGGAAGATTCTAATTGTTTTAGATGACCTATGGGAGAGGGATCAATTTCAGTTAGATGATTTGAAGACTATGTTAAAGGTTGGCAGGGGCAGCAGGGTGATTGCCATCGTAACCACCCGAGATAAGGACATTGCAGAGAAGATTTGCACCACTGAACCGTACAAACTAGAACCCCTGACAGATGACATGTGCTGGAAAATAATAAAAGAAAAGAGTGTCTTTGAAGCAAGAGATGACAAAGAACAATTGGAGAATATAGGAAGGGAAATAGCATCTAAGTGTGGAGGTGTGGCTTTAGCAGCCAAATCACTTGGATATACTCTGCAACCCATGAAGTTTGATGAATGGGTATCAGTGAGAAACAACGATATCTGGAAGGCATCTACTTTCGAATGTACATCTTTGCCATATCATAATGTGCTTGCATCCTTGTGA
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| Protein seq | MAVAEVGGMLASAVLKVATQKLGAAIAGRVMLQWNFDKDLEGMKATLESVDAVLRDAERRSIRDAAVRLWLRRLKDAAYDISDMLDDLENITSKSDAGKLGCVMIPNLTIAHKITLANKMKTISDELKEITNQHLSFRFTEDSSYKEHRVTDKRETSSKVEEALVVGRTAEKRIIISSLSKRMTEETVILPIYGIGGIGKTTLAKLVFNASNFRDYSKVWIYVSQTFDLNKISNSIISQVSESESQLTEREMINRRLDELLSGRKILIVLDDLWERDQFQLDDLKTMLKVGRGSRVIAIVTTRDKDIAEKICTTEPYKLEPLTDDMCWKIIKEKSVFEARDDKEQLENIGREIASKCGGVALAAKSLGYTLQPMKFDEWVSVRNNDIWKASTFECTSLPYHNVLASL |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0213800 | OsNip_11t0213800-01 | Chr11 | 5916975 | 5919022 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGTGGCGGAAGTCGGGGGAATGCTTGCATCTGCCGTCCTCAAGGTGGCGACCCAGAAGCTGGGCGCCGCCATAGCGGGCCGGGTCATGCTCCAGTGGAACTTCGACAAGGATCTGGAGGGGATGAAGGCCACGCTGGAGTCTGTGGACGCGGTGCTCAGGGACGCCGAGAGGCGGTCGATCCGCGACGCGGCGGTGCGGCTGTGGCTGAGGAGGCTCAAGGACGCCGCCTACGACATCTCCGACATGCTCGACGACCTGGAGAACATCACTTCCAAATCGGATGCGGGGAAGTTGGGATGTGTGATGATCCCCAATCTGACTATTGCTCACAAGATTACCCTAGCTAATAAGATGAAGACGATAAGTGATGAACTGAAGGAGATCACTAATCAACATCTTAGCTTCAGATTCACGGAAGATAGCAGCTATAAGGAGCACAGAGTTACTGATAAACGGGAAACATCGTCCAAGGTGGAAGAAGCACTAGTTGTTGGGAGGACTGCAGAGAAGCGGATAATTATATCTTCTCTGTCCAAGAGAATGACTGAAGAGACCGTAATCCTTCCTATATATGGCATTGGAGGCATAGGCAAGACAACCTTGGCGAAACTGGTTTTCAACGCTTCCAATTTCAGAGACTACTCTAAGGTCTGGATATATGTGTCTCAGACATTTGACTTGAACAAAATTAGCAACTCTATAATTTCACAAGTATCGGAAAGTGAGAGCCAGTTGACTGAAAGGGAGATGATAAATAGGCGTCTTGATGAGCTACTTTCCGGTAGGAAGATTCTAATTGTTTTAGATGACCTATGGGAGAGGGATCAATTTCAGTTAGATGATTTGAAGACTATGTTAAAGGTTGGCAGGGGCAGCAGGGTGATTGCCATCGTAACCACCCGAGATAAGGACATTGCAGAGAAGATTTGCACCACTGAACCGTACAAACTAGAACCCCTGACAGATGACATGTGCTGGAAAATAATAAAAGAAAAGAGTGTCTTTGAAGCAAGAGATGACAAAGAACAATTGGAGAATATAGGAAGGGAAATAGCATCTAAGTGTGGAGGTGTGGCTTTAGCAGCCAAATCACTTGGATATACTCTGCAACCCATGAAGTTTGATGAATGGGTATCAGTGAGAAACAACGATATCTGGAAGGCATCTACTTTCGAATGTACATCTTTGCCATATCATAATGTGCTTGCATCCTTGTGA
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| Protein seq | MAVAEVGGMLASAVLKVATQKLGAAIAGRVMLQWNFDKDLEGMKATLESVDAVLRDAERRSIRDAAVRLWLRRLKDAAYDISDMLDDLENITSKSDAGKLGCVMIPNLTIAHKITLANKMKTISDELKEITNQHLSFRFTEDSSYKEHRVTDKRETSSKVEEALVVGRTAEKRIIISSLSKRMTEETVILPIYGIGGIGKTTLAKLVFNASNFRDYSKVWIYVSQTFDLNKISNSIISQVSESESQLTEREMINRRLDELLSGRKILIVLDDLWERDQFQLDDLKTMLKVGRGSRVIAIVTTRDKDIAEKICTTEPYKLEPLTDDMCWKIIKEKSVFEARDDKEQLENIGREIASKCGGVALAAKSLGYTLQPMKFDEWVSVRNNDIWKASTFECTSLPYHNVLASL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.724913 | 1.375861 | 2.385128 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0211300 | RBH | 0.155660 | 0.167033 | 0.395528 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10770 | RBH | 1.124987 | 1.032293 | 0.597353 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0213800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007230 | RBH | 0.184482 | 4.528352 | 1.957189 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007310 | RBH | 0.212823 | 0.445578 | 1.015957 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007120 | RBH | 0.342441 | 1.518315 | 3.846814 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007140 | RBH | 0.064182 | 0.059509 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007120 | RBH | 5.265685 | 12.773895 | 6.666517 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0093900 | RBH | 1.439982 | 71.494877 | 7.1209625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007110 | RBH | 0.170104 | 0.251311 | 0.873241 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0101000 | RBH | 2.1805425 | 55.4515915 | 2.8706485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007260 | RBH | 0.212022 | 0.070946 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007130 | RBH | 0.560330 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007150 | RBH | 1.603995 | 13.509791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007240 | RBH | 0.430545 | 0.0 | 0.392089 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007230 | RBH | 0.106816 | 2.635762 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007270 | SBH | 0.290100 | 1.266545 | 1.528052 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007110 | RBH | 0.269171 | 3.348744 | 4.076067 |
