Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0179400 | OGI:11012480 | 4/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:3934039-3934606 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATAATAATGAATCAGTTAATCGTGGCGGATATGGATATCGTACGGGACGGTGGCGTCGCCGGCGGCGTTGTACCAGTACGTGGTGGCGCGGCAGTAGCCGCGGGCGAAGCGGAACGCGCCGGTGCCGCCGACCACGGGGATCTCACTCACCGGCCTCGCCGGGTTGGGCCCGAAGATGGCAACGCTGCTGCCGTTGTACGGCTCATCGGCGGCGAACACGAAGCTCATCGCCATCAGCAGCGACATCGTCTCCTTCCCGGCGCTCACGTACATCCCCTGCGCATGGCCGACCAGCCTCGACGGCGCCGTCAGGCTGGGCCCGTCGGTGAGCGGGTCGTCGATGACGTACACAGTGCCGAACACCGTCGCGGAGGCCCTCGACGTCGGCGCCTCCGCCACCTTCGCCACCGTCGAGTTCGGCCCGGTCACCACATCGTGCCAGTACACACGCATCCGCATCTCCTTCTGCTGCCCCGCCGCCTCCGCCGCCGCCGTCACGGCCTGGAGGAGTAGCGCCGCCGCCGCGAGCACGAAGGACGACGAGGCTGCCATTGCTTAATTAGCTAG
More
|
||||||||||
| CDS seq | ATGGCAGCCTCGTCGTCCTTCGTGCTCGCGGCGGCGGCGCTACTCCTCCAGGCCGTGACGGCGGCGGCGGAGGCGGCGGGGCAGCAGAAGGAGATGCGGATGCGTGTGTACTGGCACGATGTGGTGACCGGGCCGAACTCGACGGTGGCGAAGGTGGCGGAGGCGCCGACGTCGAGGGCCTCCGCGACGGTGTTCGGCACTGTGTACGTCATCGACGACCCGCTCACCGACGGGCCCAGCCTGACGGCGCCGTCGAGGCTGGTCGGCCATGCGCAGGGGATGTACGTGAGCGCCGGGAAGGAGACGATGTCGCTGCTGATGGCGATGAGCTTCGTGTTCGCCGCCGATGAGCCGTACAACGGCAGCAGCGTTGCCATCTTCGGGCCCAACCCGGCGAGGCCGGTGAGTGAGATCCCCGTGGTCGGCGGCACCGGCGCGTTCCGCTTCGCCCGCGGCTACTGCCGCGCCACCACGTACTGGTACAACGCCGCCGGCGACGCCACCGTCCCGTACGATATCCATATCCGCCACGATTAA
More
|
||||||||||
| Protein seq | MAASSSFVLAAAALLLQAVTAAAEAAGQQKEMRMRVYWHDVVTGPNSTVAKVAEAPTSRASATVFGTVYVIDDPLTDGPSLTAPSRLVGHAQGMYVSAGKETMSLLMAMSFVFAADEPYNGSSVAIFGPNPARPVSEIPVVGGTGAFRFARGYCRATTYWYNAAGDATVPYDIHIRHD |
||||||||||
| Function | Dirigent protein 23 [UniProtKB/Swiss-Prot:Q84TH6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0179400 | OsNip_11t0179400-00 | Chr11 | 3934039 | 3934606 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCAGCCTCGTCGTCCTTCGTGCTCGCGGCGGCGGCGCTACTCCTCCAGGCCGTGACGGCGGCGGCGGAGGCGGCGGGGCAGCAGAAGGAGATGCGGATGCGTGTGTACTGGCACGATGTGGTGACCGGGCCGAACTCGACGGTGGCGAAGGTGGCGGAGGCGCCGACGTCGAGGGCCTCCGCGACGGTGTTCGGCACTGTGTACGTCATCGACGACCCGCTCACCGACGGGCCCAGCCTGACGGCGCCGTCGAGGCTGGTCGGCCATGCGCAGGGGATGTACGTGAGCGCCGGGAAGGAGACGATGTCGCTGCTGATGGCGATGAGCTTCGTGTTCGCCGCCGATGAGCCGTACAACGGCAGCAGCGTTGCCATCTTCGGGCCCAACCCGGCGAGGCCGGTGAGTGAGATCCCCGTGGTCGGCGGCACCGGCGCGTTCCGCTTCGCCCGCGGCTACTGCCGCGCCACCACGTACTGGTACAACGCCGCCGGCGACGCCACCGTCCCGTACGATATCCATATCCGCCACGATTAA
More
|
|||||||
| Protein seq | MAASSSFVLAAAALLLQAVTAAAEAAGQQKEMRMRVYWHDVVTGPNSTVAKVAEAPTSRASATVFGTVYVIDDPLTDGPSLTAPSRLVGHAQGMYVSAGKETMSLLMAMSFVFAADEPYNGSSVAIFGPNPARPVSEIPVVGGTGAFRFARGYCRATTYWYNAAGDATVPYDIHIRHD |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0174700 | SBH | 0.473119 | 1.410418 | 2.114786 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g07710 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0179400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005280 | RBH | 0.0 | 52.037365 | 10.403159 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0005250 | RBH | 0.021582 | 36.779835 | 0.981911 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0005280 | SBH | 0.0 | 96.427231 | 6.738664 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005140 | SBH | 0.000000 | 1.078321 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005060 | SBH | 0.0 | 23.638411 | 3.313388 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0066100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005140 | RBH | 0.113164 | 4.926851 | 1.033366 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0065800 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005090 | SBH | 0.026785 | 0.891118 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0005180 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005180 | SBH | 0.0 | 89.813347 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0005170 | RBH | 0.0 | 0.0 | 0.522610 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0005160 | SBH | 0.138738 | 36.180645 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G005220 | SBH | 0.0 | 5.558372 | 2.946915 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0005110 | SBH | 0.0 | 44.844837 | 8.549788 |
