Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0150450 | OGI:11007690 | 6/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:2345516-2348240 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATGCAATGAGCCCTTGAATATGATTAACAAATAAATGTGTTTTCTAACAAGAAACCTGAACAATTTTCTCATATTTACATCCTTCAAAGTAACCTATGTCCTATAACAGCCATCCATGAATCCACCTGTATTGCTGCTTATAATTTTACATGTAGTTTACCCTGAAGACAGCAGACTGCACAACAGTCACTTGCAGGATCTTAGCTAGGTAGATCATGATCTGTCTTGAATACGATGATTCTCCACATGCTTTTTCATTGTTTGGTTGTTAATTTCACCAGGAGGATTAACTTCAGATGATGGCAAGTTGTTATCCCCTTCCACTGATGGACTATATAATGTCCGATTCGACTGGTCAGGTTCATTTATAAGAACCTGAGATGTCCTTGGTGAATGCCCCGTGCCGACAAACAGGCAATTGCATTGATCTGACCTTGATGGTTCAGGGGAACATGGAGGTATTATCACTTCACTTGGTAGAGGAGACATTGTCTGCTTGCTATCAGGGTAGTCACACAATGAAATTCTACAAACCGGGCATGTTGAGTGCTGCATCAACCAAATATCTATGCACAACGCATGAAAATTGTGGCCACAGTAAGGAAGAATACGAAGTACGTCTTTCTCTTCATAGTCTGCAAGACAGACAACACACCTGCCAACAATGGAAGGAAATGATTCAGAATATAATATTGGTGTAATTGGGAAAATGCTAACAATCACCTATAGAAACACAAATCACAATTCAGATACTAGTAGTATTTATCAGAGTTGACAACAGTTTATCAACACTTTAACTATAAAATACAATCCCACAATGGATGATGCCAAACATGGAAACCTCTTATTTGATACAGCAAAACCACTATAGCGAATAGCGCCAATATGAATATATGATTAACAGAAGCATCTCTGTAGCTTCTTTAGATACACATCGCACAACCAACCTAATCCAAGCTTCCATCCCATCAAGCACAGGTGAGGGTTTAACCTACTTGATGACAGTGCCTCATCCTTCCTCCTCGACTTATTCAACAGAACTTAATGTCTGCATTCTGTTATGTGATTGACCTAATGATCTTAGCTGTTTGGTAATAATTCGAGTTTTCAGGGATCTCACGATTCAATAGTCAATCTCCAATTAAACACAACAATCAACACTATGGTACTAAAAAAGTCATACTGTTTCTATTAGGCACTAACATCCACATGATAACTTATTTGATACTAAACAATCAATCAAAATACTCAAGGACAACGTCTTGGTACTTCAAACTTCATTGCAAGGCGGTGTTTTTTCTTCAGGATTTTAAGTAGCAGTTATCTATGACTGCCTTACCAAGAAGATATTAGGGGTTGGAGGCAACCACGTGCTTGCGAAACATTAAATTGGAAAATGTTGGGCAGGAGGCAATATTACCTTTTATGAAAATAAAAGGGAGTAAGTCTCAATTGTTGTTTCTCAGTTCAGGTCATCTATTATAATCATTAACAATATATACTTGCAAATGATGTAAATTTGTAGAACCCAAATTCGCTCATACCGTTTAAGAAACTATTGCATTCAACAATAGAAACTGAATCATGTCATGTTGGCATATCCGCCCGGAGAATGACATACTCAGTACTAGTATGTTGAGAAGAATTCAAATTTCAAATAATATGTGAAGATTCGGCGCTCATAGAAGAACACCTAACGAACATAGATGCATGCTTCTATGCTAGTATCATCCATCGACTACGAAGAAGAGCTTCACAGATCTAAAAACACCTAAACTCATAAAAACAGTAGTCATCCAGTAAGTGGACATCCAGGAGAATCTCAACTAAACACTGACAGTGACATGTGCTCAAACAGAAAATCTCAAACATATAATATAAAATCCATAATAGTTGATAGATCCCCTTTTCCTCACTCGTATGAGGGCGCCCCCGCAACTACAATGCCCTAATTCAGCGGGCATTCAATCCCCCGGTCACCGACTCGATCCTACCAACTGAAACGTGCTCAATAGAATATCATCCAAGTTCACATTCGAACTGCAATCGTTGGGATCGATTCACCCGGAGAAGAACGAATTCGAACCCCCCACAATGCGGATAACCAAACCGACGAGAAAAGCACGCGCTCTAAGCCAAGCATCATCACCGCAACAACAACAACAACAACACTGTAGATTCGAAGCTTAGATTTCACGCAACGCAATGCTGCAGTGCGAAGGCATTGCACGGGACGCGGGGAATCGCGATCGTTGCGGGGGAAGAGGGAGGAGCACTTACTGGGCGGCGGCGTCGGAGGAGGAGGAGGAGGAGGAGGCCGAGGCGTGTCCGCGTGGGGCAGCACCGAGGAAGGCGCGGGTGGGGAAGGCGGCGACGGTGGCGGGGTCGAGGCCGGAGGGGGGGAGGTGGCGGTGGTGGTCGACGACGTAGACGGAGGAGAGGAAGTGGGAGGAGGCGGCGGGGAGGCGGGCGCGGCGGCGGCGGCGGTGGCGGCGGAGGAGGGAGCAGGCGAGGCGGGTGCAGACGAAGACGATGAAGAGGACGCTGCCGCAGAAGCCGAGCAGCGTCAGCACCATGCTCGTCGACACCCCCGACGCCATCGCGCCCCCCCGAACCTCGTCGGCGGCCGGCGGCGGCGGATGGGGTAGCGGCGAGCGGCGAGCGGCGGTGCGGCCCCCTCACGTCACGAGGGGTGGATGGATGGACTCTCGCTGGACTCCTCTC
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| CDS seq | ATGGCGTCGGGGGTGTCGACGAGCATGGTGCTGACGCTGCTCGGCTTCTGCGGCAGCGTCCTCTTCATCGTCTTCGTCTGCACCCGCCTCGCCTGCTCCCTCCTCCGCCGCCACCGCCGCCGCCGCCGCGCCCGCCTCCCCGCCGCCTCCTCCCACTTCCTCTCCTCCGTCTACGTCGTCGACCACCACCGCCACCTCCCCCCCTCCGGCCTCGACCCCGCCACCGTCGCCGCCTTCCCCACCCGCGCCTTCCTCGGTGCTGCCCCACGCGGACACGCCTCGGCCTCCTCCTCCTCCTCCTCCTCCGACGCCGCCGCCCAGTGTGTTGTCTGTCTTGCAGACTATGAAGAGAAAGACGTACTTCGTATTCTTCCTTACTGTGGCCACAATTTTCATGCGTTGTGCATAGATATTTGGTTGATGCAGCACTCAACATGCCCGGTTTGTAGAATTTCATTGTGTGACTACCCTGATAGCAAGCAGACAATGTCTCCTCTACCAAGTGAAGTGATAATACCTCCATGTTCCCCTGAACCATCAAGGTCAGATCAATGCAATTGCCTGTTTGTCGGCACGGGGCATTCACCAAGGACATCTCAGGTTCTTATAAATGAACCTGACCAGTCGAATCGGACATTATATAGTCCATCAGTGGAAGGGGATAACAACTTGCCATCATCTGAAGTTAATCCTCCTGGTGAAATTAACAACCAAACAATGAAAAAGCATGTGGAGAATCATCGTATTCAAGACAGATCATGA
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| Protein seq | MASGVSTSMVLTLLGFCGSVLFIVFVCTRLACSLLRRHRRRRRARLPAASSHFLSSVYVVDHHRHLPPSGLDPATVAAFPTRAFLGAAPRGHASASSSSSSSDAAAQCVVCLADYEEKDVLRILPYCGHNFHALCIDIWLMQHSTCPVCRISLCDYPDSKQTMSPLPSEVIIPPCSPEPSRSDQCNCLFVGTGHSPRTSQVLINEPDQSNRTLYSPSVEGDNNLPSSEVNPPGEINNQTMKKHVENHRIQDRS |
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| Function | RING-H2 finger protein ATL38 [UniProtKB/Swiss-Prot:O64762] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0150450 | OsNip_11t0150450-01 | Chr11 | 2345516 | 2348240 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGTCGGGGGTGTCGACGAGCATGGTGCTGACGCTGCTCGGCTTCTGCGGCAGCGTCCTCTTCATCGTCTTCGTCTGCACCCGCCTCGCCTGCTCCCTCCTCCGCCGCCACCGCCGCCGCCGCCGCGCCCGCCTCCCCGCCGCCTCCTCCCACTTCCTCTCCTCCGTCTACGTCGTCGACCACCACCGCCACCTCCCCCCCTCCGGCCTCGACCCCGCCACCGTCGCCGCCTTCCCCACCCGCGCCTTCCTCGGTGCTGCCCCACGCGGACACGCCTCGGCCTCCTCCTCCTCCTCCTCCTCCGACGCCGCCGCCCAGTGTGTTGTCTGTCTTGCAGACTATGAAGAGAAAGACGTACTTCGTATTCTTCCTTACTGTGGCCACAATTTTCATGCGTTGTGCATAGATATTTGGTTGATGCAGCACTCAACATGCCCGGTTTGTAGAATTTCATTGTGTGACTACCCTGATAGCAAGCAGACAATGTCTCCTCTACCAAGTGAAGTGATAATACCTCCATGTTCCCCTGAACCATCAAGGTCAGATCAATGCAATTGCCTGTTTGTCGGCACGGGGCATTCACCAAGGACATCTCAGGTTCTTATAAATGAACCTGACCAGTCGAATCGGACATTATATAGTCCATCAGTGGAAGGGGATAACAACTTGCCATCATCTGAAGTTAATCCTCCTGGTGAAATTAACAACCAAACAATGAAAAAGCATGTGGAGAATCATCGTATTCAAGACAGATCATGA
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| Protein seq | MASGVSTSMVLTLLGFCGSVLFIVFVCTRLACSLLRRHRRRRRARLPAASSHFLSSVYVVDHHRHLPPSGLDPATVAAFPTRAFLGAAPRGHASASSSSSSSDAAAQCVVCLADYEEKDVLRILPYCGHNFHALCIDIWLMQHSTCPVCRISLCDYPDSKQTMSPLPSEVIIPPCSPEPSRSDQCNCLFVGTGHSPRTSQVLINEPDQSNRTLYSPSVEGDNNLPSSEVNPPGEINNQTMKKHVENHRIQDRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 1.083144 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0149100 | RBH | 0.131627 | 0.0 | 3.615345 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g05300 | RBH | 0.000000 | 0.0 | 0.277560 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0150450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0003460 | SBH | 0.0 | 1.414121 | 10.655941 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0003530 | SBH | 0.0 | 0.0 | 0.433890 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0003430 | SBH | 0.0 | 5.209366 | 6.126748 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0003390 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0003370 | SBH | 0.0 | 12.897657 | 5.556578 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0043500 | RBH | 0.6476365 | 1.920741 | 1.346084 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003460 | RBH | 0.0 | 0.0 | 0.477779 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0043100 | RBH | 0.80189 | 0.783498 | 3.9889115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0003350 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0003460 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0003460 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0003390 | SBH | 0.0 | 0.0 | 0.384251 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0003470 | SBH | 0.0 | 2.819175 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G003460 | RBH | 0.138379 | 0.000000 | 0.469783 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0003450 | SBH | 0.0 | 2.943439 | 0.940190 |
