Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0138700 | OGI:11006050 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:1801184-1802662 | ||||||||
| Gene Symbol | OsFbox566, Os_F0279 | ||||||||||
| DNA seq | ATGCCCAATCACAACCCACCGCACGCAGCAGCAGCTGCCCGCCTGAGCTGAGCTCCCAATCCGGCAATCCGCCATGCCCGCCGCCGAGAGCTGCCACTCCCGCAGCCTCTCGTGGCTCGTCAAGTCCTGCATCCCCGCCGACCCCGCCCGCCACATCGCCGTCCCCGTTCTTTGCCCCACCCCGCAACCGCCGCCTCCCTCGTCGCCGCCGGCACCCCCAATCTCCACCCTCCCCGACGACCTCCTCCTCGAGTGCCTCGCCCGCGTCCCCCGCGCCTCCCTCCCTCCGCTCCCCGCCGTCTCCCGCCGCTTCGCCACGCTCCTCGCCTCCGACGCCTTCCTCCACCTCCGCCGCGCCCACGCCCACCTCCGCCCCTCCCTCCTCGCCCTCTCCGTCTCCGACAACGGTTGCGTCCCGCAGGCGCTGCTCCGGTTTGAATCCTCCGTGCCCGTGCTCGAGGTCGCCCCGCTGCCGTTGCCCCCGACCCTGCTGCATTGCGGCGGCTCTGTGTTCGCGCATGCCCGCGCGGTCGTGCTGGGACGGGATGTCTTCCTCATCGGCCGCGGGGCGACGCTGCGCGTCGACGCGCTCACCGGCGCCGCCCGCGCGTGCGCACCCACGCTCTTCCCGCGGAAGAAGTTCGCCGCGGCCGCCGTGGGTGATCGGATCTACGTCGCCGGCGGATCCGCGCGCACCGCGGCGGTCGAGGAGTACGACCCGGAGGTCGACGCGTGGCGCGTGGTCGGCGAGGCCCCGCGGCGGAGGTACGGGTGCGCCGGCGCGAGTGCGGGAGGCGTGTTCTACGTCGCCGGGGGCGTCGCGGTGTCCGGCGAGGGCGCGCGGGCGCTCGAGGCGCACGTGTGCGCCGGGTCGGTGGACGCGCTGCACGTCGCGTCCGGCACCTGGGCGCGCCCCCGTGCGCTCCCCGGCGGCGGCTGTGTCGTGGGGGCGTGCGGCGTCGGTGACCACCTGTACGTAGTAGCCAGCCACGCGGTGGAGCTCTCCTTCTGGAGGTGGTCCGGCGCCACCGGCCGTGGCGGTGACGGCAGAGGCTGGGGCGGGTGGGTGGCGCTCGAGGCGCCGCCGATGCCGAGGGGGTCGGTGGGGCTCGGCATGGCGGTGCGCGTGGCGATGGCTGGCCTAGGAACCAACAGGGTGGCGGCCGTGGTGAGCGCCGCGGCCGTGAGGGGTCACAATGCCGGCGGCGGCGCGTTGGAAGGGATGGTGCTGGTTTACGACATCGCCGGCGGCAAGTGGAGCCGCGCGCCGGACCTGCCGCCCGGGTTCCGCCGCGCCGCGTGCGCCGGCGTCGAGTGCTGAGAATGTTGGTAGATGTGGTCCCCGTAGTTCAGTGAGATTCGTACTATTTGGTGGATGGACAGCTTGGTGCAATGTCAAGTAACATGGCGCCATCGTGGGATTGTTTGTTGAACAGCAACTTGATTGGTTGCCACAAAATTTCTCCAGTTGTTATTTAG
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| CDS seq | ATGCCCGCCGCCGAGAGCTGCCACTCCCGCAGCCTCTCGTGGCTCGTCAAGTCCTGCATCCCCGCCGACCCCGCCCGCCACATCGCCGTCCCCGTTCTTTGCCCCACCCCGCAACCGCCGCCTCCCTCGTCGCCGCCGGCACCCCCAATCTCCACCCTCCCCGACGACCTCCTCCTCGAGTGCCTCGCCCGCGTCCCCCGCGCCTCCCTCCCTCCGCTCCCCGCCGTCTCCCGCCGCTTCGCCACGCTCCTCGCCTCCGACGCCTTCCTCCACCTCCGCCGCGCCCACGCCCACCTCCGCCCCTCCCTCCTCGCCCTCTCCGTCTCCGACAACGGTTGCGTCCCGCAGGCGCTGCTCCGGTTTGAATCCTCCGTGCCCGTGCTCGAGGTCGCCCCGCTGCCGTTGCCCCCGACCCTGCTGCATTGCGGCGGCTCTGTGTTCGCGCATGCCCGCGCGGTCGTGCTGGGACGGGATGTCTTCCTCATCGGCCGCGGGGCGACGCTGCGCGTCGACGCGCTCACCGGCGCCGCCCGCGCGTGCGCACCCACGCTCTTCCCGCGGAAGAAGTTCGCCGCGGCCGCCGTGGGTGATCGGATCTACGTCGCCGGCGGATCCGCGCGCACCGCGGCGGTCGAGGAGTACGACCCGGAGGTCGACGCGTGGCGCGTGGTCGGCGAGGCCCCGCGGCGGAGGTACGGGTGCGCCGGCGCGAGTGCGGGAGGCGTGTTCTACGTCGCCGGGGGCGTCGCGGTGTCCGGCGAGGGCGCGCGGGCGCTCGAGGCGCACGTGTGCGCCGGGTCGGTGGACGCGCTGCACGTCGCGTCCGGCACCTGGGCGCGCCCCCGTGCGCTCCCCGGCGGCGGCTGTGTCGTGGGGGCGTGCGGCGTCGGTGACCACCTGTACGTAGTAGCCAGCCACGCGGTGGAGCTCTCCTTCTGGAGGTGGTCCGGCGCCACCGGCCGTGGCGGTGACGGCAGAGGCTGGGGCGGGTGGGTGGCGCTCGAGGCGCCGCCGATGCCGAGGGGGTCGGTGGGGCTCGGCATGGCGGTGCGCGTGGCGATGGCTGGCCTAGGAACCAACAGGGTGGCGGCCGTGGTGAGCGCCGCGGCCGTGAGGGGTCACAATGCCGGCGGCGGCGCGTTGGAAGGGATGGTGCTGGTTTACGACATCGCCGGCGGCAAGTGGAGCCGCGCGCCGGACCTGCCGCCCGGGTTCCGCCGCGCCGCGTGCGCCGGCGTCGAGTGCTGA
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| Protein seq | MPAAESCHSRSLSWLVKSCIPADPARHIAVPVLCPTPQPPPPSSPPAPPISTLPDDLLLECLARVPRASLPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLALSVSDNGCVPQALLRFESSVPVLEVAPLPLPPTLLHCGGSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARACAPTLFPRKKFAAAAVGDRIYVAGGSARTAAVEEYDPEVDAWRVVGEAPRRRYGCAGASAGGVFYVAGGVAVSGEGARALEAHVCAGSVDALHVASGTWARPRALPGGGCVVGACGVGDHLYVVASHAVELSFWRWSGATGRGGDGRGWGGWVALEAPPMPRGSVGLGMAVRVAMAGLGTNRVAAVVSAAAVRGHNAGGGALEGMVLVYDIAGGKWSRAPDLPPGFRRAACAGVEC |
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| Function | F-box/kelch-repeat protein At5g26960 [UniProtKB/Swiss-Prot:Q6NPN5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0138700 | OsNip_11t0138700-01 | Chr11 | 1801184 | 1802662 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCCGCCGCCGAGAGCTGCCACTCCCGCAGCCTCTCGTGGCTCGTCAAGTCCTGCATCCCCGCCGACCCCGCCCGCCACATCGCCGTCCCCGTTCTTTGCCCCACCCCGCAACCGCCGCCTCCCTCGTCGCCGCCGGCACCCCCAATCTCCACCCTCCCCGACGACCTCCTCCTCGAGTGCCTCGCCCGCGTCCCCCGCGCCTCCCTCCCTCCGCTCCCCGCCGTCTCCCGCCGCTTCGCCACGCTCCTCGCCTCCGACGCCTTCCTCCACCTCCGCCGCGCCCACGCCCACCTCCGCCCCTCCCTCCTCGCCCTCTCCGTCTCCGACAACGGTTGCGTCCCGCAGGCGCTGCTCCGGTTTGAATCCTCCGTGCCCGTGCTCGAGGTCGCCCCGCTGCCGTTGCCCCCGACCCTGCTGCATTGCGGCGGCTCTGTGTTCGCGCATGCCCGCGCGGTCGTGCTGGGACGGGATGTCTTCCTCATCGGCCGCGGGGCGACGCTGCGCGTCGACGCGCTCACCGGCGCCGCCCGCGCGTGCGCACCCACGCTCTTCCCGCGGAAGAAGTTCGCCGCGGCCGCCGTGGGTGATCGGATCTACGTCGCCGGCGGATCCGCGCGCACCGCGGCGGTCGAGGAGTACGACCCGGAGGTCGACGCGTGGCGCGTGGTCGGCGAGGCCCCGCGGCGGAGGTACGGGTGCGCCGGCGCGAGTGCGGGAGGCGTGTTCTACGTCGCCGGGGGCGTCGCGGTGTCCGGCGAGGGCGCGCGGGCGCTCGAGGCGCACGTGTGCGCCGGGTCGGTGGACGCGCTGCACGTCGCGTCCGGCACCTGGGCGCGCCCCCGTGCGCTCCCCGGCGGCGGCTGTGTCGTGGGGGCGTGCGGCGTCGGTGACCACCTGTACGTAGTAGCCAGCCACGCGGTGGAGCTCTCCTTCTGGAGGTGGTCCGGCGCCACCGGCCGTGGCGGTGACGGCAGAGGCTGGGGCGGGTGGGTGGCGCTCGAGGCGCCGCCGATGCCGAGGGGGTCGGTGGGGCTCGGCATGGCGGTGCGCGTGGCGATGGCTGGCCTAGGAACCAACAGGGTGGCGGCCGTGGTGAGCGCCGCGGCCGTGAGGGGTCACAATGCCGGCGGCGGCGCGTTGGAAGGGATGGTGCTGGTTTACGACATCGCCGGCGGCAAGTGGAGCCGCGCGCCGGACCTGCCGCCCGGGTTCCGCCGCGCCGCGTGCGCCGGCGTCGAGTGCTGA
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| Protein seq | MPAAESCHSRSLSWLVKSCIPADPARHIAVPVLCPTPQPPPPSSPPAPPISTLPDDLLLECLARVPRASLPPLPAVSRRFATLLASDAFLHLRRAHAHLRPSLLALSVSDNGCVPQALLRFESSVPVLEVAPLPLPPTLLHCGGSVFAHARAVVLGRDVFLIGRGATLRVDALTGAARACAPTLFPRKKFAAAAVGDRIYVAGGSARTAAVEEYDPEVDAWRVVGEAPRRRYGCAGASAGGVFYVAGGVAVSGEGARALEAHVCAGSVDALHVASGTWARPRALPGGGCVVGACGVGDHLYVVASHAVELSFWRWSGATGRGGDGRGWGGWVALEAPPMPRGSVGLGMAVRVAMAGLGTNRVAAVVSAAAVRGHNAGGGALEGMVLVYDIAGGKWSRAPDLPPGFRRAACAGVEC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.518351 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0135200 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g04330 | RBH | 0.0 | 0.0 | 0.133434 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0138700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002570 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0002620 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0002590 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0002540 | RBH | 0.0 | 0.023696 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0002520 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0029800 | SBH | 0.287116 | 0.283769 | 0.253102 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0002580 | RBH | 0.0 | 0.084451 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0032800 | RBH | 0.269313 | 0.066081 | 0.7340205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0002470 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0002610 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0002600 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0002510 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0002610 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G002550 | RBH | 0.0 | 0.0 | 0.181044 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002520 | RBH | 0.0 | 0.000000 | 0.0 |
