Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0113900 | OGI:11002400 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:641561-642962 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAAACATGAGCAGCAGGCGGTACATTGGAAGGAGGAGAAGCATGGTGAGGCGGCGGCGCAGGTGGTGGTGATGAAGCAGGGGGGAGGGGCATGTGGCGGCAGAGAGGGCAGGTGTTGTGGTTGGCGAGCCACCGGTAGATGCATTCCTTGTGGAACTCGTGCCTGCACGCCACCAGCGTGCAGCACCTCTCCCCCTCCTCCAACTCCCCCAGGCATATGCTGCACTCCGACGATTCATCCCGCTGCCGGCGATGGTGCGTGTGGTCCGGCAGCCAGATCTTCGGATCGGGCGGCGGCGCACCGGCATGTCGACGTTGGCGATCGACACAGCAGAGGAGGACGACGCACACGGCGTACAGGGTGCTGCCGGCGAGGGCTCCTGTGAGCAAGGAGAACCCGAACGCCTGCCAGATGGGCAGCTCTTTCAAGAACAGCATCGCGCAACTATATCTTGATATTTCTGTTTTTTCCAATTCCACTTGAATTGTGTTCGTTCTGCGCCGCCCATGCATATATGCGTAATAATGTGTTGCAAGCATCAAACAGTTATTATTATATGTTGCACCCTTTATATATATGCAGATCCAAAAATAGTAGCATCAGTGTATTTTAGGTATCTGTGTGCACAATATATGGATCTCTTGTTAGCTCGGACTTGATTTTTAATCCTTTTGAGATGAGATAAAAATATTGTTATGATCCAGCAGTCCATGCATACATACAAGAAAGAAATGGATCAACTACGATATTATTATTGCCTGTTGATTGGATCTTTAATTAATCGCCGGAGAAAAAAAAAGATCGATCTGTGATGTGAGATGCTCTGGTCCATGTATGAGGAGGCGAAGCAAGGGTCGCCGTGGCTGTGGCGCAGGACAGGAGGACGGTCACGTGTCAGAAACGGATTTACTTTTTGCTAATCCAATTCAGAGTCGATGATCGATCCATCGACATATACGTACGTACGTACACAAGAAAATCGAGACATATCGATCGACTCGAGTGTGTGCAGTGCATGGACGCGGAGGATTTCATGGACAGCTGGCTCATGTGGGGCAACATCTTTTTCTTCTTCCTCGCCCTCGCCATCACCGTGGAGGTCGATCTCATCCGCCTCCGCCGCAACGACGACGGCAATAACAAGTCGGCGCACCAGTACGACATGCTGATCGAGAGGCTGCTGCTGCTACGACCTAAAGACGACCAAGACAACGAGCAGTGCGTCATCTGTCTGTCGGAGAACGAGGACGATGTCGACGGCGGCGGCGGCGAGCGGGGGAGAGGGAGGATGCTGCCGGGGTGCGCGCACGCGTTTCACAAGGATTGCGTCGTCAAGTGGCTGCGCAACCGCACAACATGCCCGCTCTGCCGTTCTGACGTCGCCGTCGCCGCCGCCGCCGC
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| CDS seq | CGCACTGCTCGAGCCCTCGCCGGCAGCACCCTGTACGCCGTGTGCGTCGTCCTCCTCTGCTGTGTCGATCGCCAACGTCGACATGCCGGTGCGCCGCCGCCCGATCCGAAGATCTGGCTGCCGGACCACACGCACCATCGCCGGCAGCGGGATGAATCGTCGGAGTGCAGCATATGCCTGGGGGAGTTGGAGGAGGGGGAGAGGTGCTGCACGCTGGTGGCGTGCAGGCACGAGTTCCACAAGGAATGCATCTACCGGTGGCTCGCCAACCACAACACCTGCCCTCTCTGCCGCCACATGCCCCTCCCCCCTGCTTCATCACCACCACCTGCGCCGCCGCCTCACCATGCTTCTCCTCCTTCCAATGTACCGCCTGCTGCTCATGTTTAG |
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| Protein seq | RTARALAGSTLYAVCVVLLCCVDRQRRHAGAPPPDPKIWLPDHTHHRRQRDESSECSICLGELEEGERCCTLVACRHEFHKECIYRWLANHNTCPLCRHMPLPPASSPPPAPPPHHASPPSNVPPAAHV |
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| Function | RING-H2 finger protein ATL3 [UniProtKB/Swiss-Prot:Q9XF63] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0113900 | OsNip_11t0113900-00 | Chr11 | 641561 | 642962 | - | RAP2018-11-26 | ||
| CDS seq | CGCACTGCTCGAGCCCTCGCCGGCAGCACCCTGTACGCCGTGTGCGTCGTCCTCCTCTGCTGTGTCGATCGCCAACGTCGACATGCCGGTGCGCCGCCGCCCGATCCGAAGATCTGGCTGCCGGACCACACGCACCATCGCCGGCAGCGGGATGAATCGTCGGAGTGCAGCATATGCCTGGGGGAGTTGGAGGAGGGGGAGAGGTGCTGCACGCTGGTGGCGTGCAGGCACGAGTTCCACAAGGAATGCATCTACCGGTGGCTCGCCAACCACAACACCTGCCCTCTCTGCCGCCACATGCCCCTCCCCCCTGCTTCATCACCACCACCTGCGCCGCCGCCTCACCATGCTTCTCCTCCTTCCAATGTACCGCCTGCTGCTCATGTTTAG
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| Protein seq | RTARALAGSTLYAVCVVLLCCVDRQRRHAGAPPPDPKIWLPDHTHHRRQRDESSECSICLGELEEGERCCTLVACRHEFHKECIYRWLANHNTCPLCRHMPLPPASSPPPAPPPHHASPPSNVPPAAHV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0113700 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g02250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0113900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0002570 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0001040 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0001140 | SBH | 7.679023 | 0.000000 | 58.632210 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0001000 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000980 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0012800 | RBH | 0.0296645 | 0.0510725 | 0.1422095 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0003460 | SBH | 0.0 | 0.0 | 0.477779 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0014200 | RBH | 0.210122 | 0.0133425 | 0.2930395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001130 | SBH | 44.296913 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000990 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000990 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001020 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001000 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000980 | RBH | 0.0 | 0.0 | 0.0 |
