Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0102900 | OGI:11000290 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:117290-124378 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAAGAAGCTCAAGGACAAATTCACCCAAAATTTGTTGCTCGGTGGCAAATCTAAACAAGTCATGCACAGCTTGCTTAACCTATCAACGAATATTAGAAATATAGCATTAGAAGAGTCCGTAATCCGTATGTGCTACCTCTACCTGAGACCTGGGCGCATGAGCAGCTCATCGAACGAAGCATTCTGCTCCAGGTCTTGTACGCTGCCTGTCGTGTTGACGGCTTCGGAGGGAGACGTCTTGGACATGAGGTGGTGAATGCTGGAGGGCAGCTCCCGTTGCAGCTCGATGGCAATGGCGTCCTGAATCTCCTTGAGCACCTCCGAGATGGACGGCCTCAGCACCCCCTTGGGCTTCACGCACATCGTCGCCACCTCCGCAATCTTCCACACTGACTGCAGGTCGTACCCTGCGTCTAACGACTGATCAATGATGCCGTGGATATCCCCACTCTCCATGTGCGATCTAGCCTGCCAATTCACAACTCTTCACTCAGCATCTTTGTCCGCGCCAATTGCTCGGATATCTTTGATAATTCACTATCAGGAAGAAAGACTAAATGCAAAGTTCATGTATCATCATAAGACCTACTACTTCTTACCCATTCAACAATGTTACGGCAGTGGAGCCCAAAGTTGTCATTTGAGATTGGCTCATGGCCTGAGATTAGCTCAAGTAAAATGACACCAAAACTGTACATATCACTCTTCTCTGTTAGCTGCTGCGAGATATAGTACCTACGAGCACACGCAAAAAGGGTGAGCTTGGGGAACACTTGGCATCAGATGTTACAAAGGTATATAGCAATTCAATTTGCAAGGCCATTGATAACAAGAATAGACTTCATAAATTTCAGGAAAGACATGGCCTTACTCTGGGTCCAGATATCCAACTGTTCCTCTAACTATACTTGATACATGAGACCCGTCGACAACAGGTTTTGACAAGCCAAAGTCTGCAACTTTTGCTCTCATGTTCTTGTCAAGGAGAATGTTACTGCTCTTGAGGTCTCTGTGGATGATAGTTGGGGAGCATCCTGTGTGGAGATACTCTATTCCTGATATTTTATTTTTTTTTCATGGAAATGAAAGACTTCAGAATCTTTGAAATGCATGTTGGTAGAATAATCACAGGAAAATTGTACACGAGGAAGGGAGGGAGATAAACCTTTTGCAGCATCTTCTGCTATCTCAAGACGCTTGACCCAGCTAGTTATTTTTACATCATCAGGGCCTCCTGTCAAAGTATGATAAAGTTCATGTCAATCCTGAGCCTCAGTGTCAAAGAATCATGCACGAGCTAGACAAGTAGACAAAGCCGCAGCTGAGCCTTGATTTATGTGTAGCATGGAAACTTCTCAAATCTTGACAGTTTGTATTCAGTTTTTAGTTAAGACTGGAAAGAAGTAAACATCAGAACAGAAAAGAAAAGGCTTATACATCAGTGAAGATCCTATAAGTTTTTCGGAACACGAATCCTTATCCAAAACTGGAAAAAGAAAACTCAAGCATGAATTTGCTGTATTATCTAGGGAAATATCAGGTGAAAAGTACCAATCCGATAAAATCGTGGAAACCACTGCACAAACTATGCATATGACTTCAAAAAATTTCTCAAAATAATTACTGTATGAGGGGAGGAGATAATGAGATACCATACGAAATCATGGAGACCCTAATATTCTAAAATATAACTACACATGGAACATTTACTTGTAGAAGAATCATTCTCTACACAACGACAATTTGGTGTTGATTCTGCAAACTAGATTTATCATCAGATGGTAGGACCATAGGAACTTACCACGGAGGTGCTCTTTTAACGTCCCGTTATGCATGAATTCATACACAAGTATATTTTTACCATCTTGCTGGCTGTAACCAAGGAAGCTCACCAGGTTTCTATGATGAATTCTTGAAAGCAATGTTACCTGAAACATAAGTCCGTCAGATACTATACTACATAGAGGGTGAGGGTCCATAGGATGTTCCAAATAGAAAATGTTCATATCTTATACTACTTAAAATAAATTGAGGTTATAAAGTATATGTAACGCAACATGGTCACATCCCATTAGTGTAGGTCTATCAATTAAGTAGGAAATGAATGTGTCCCAGAATATACTGGGCTTCAGCTTCAGCTTCAAGGTTTCAATCTACCAAGCAGTGATAAAATTAGCAATAGGTACGCAAGTTTTATTTATATCTTAAACTGTTAAACTGTGAAAAACAGCCCATTTTGGGCCGAACACAAAGCCTTTTTGGGCCCTGGGTCAACACTCATTAAACTGTGTGCACAAAGGTTAAAATTCATCTGTTTTTGGCTAAAGGCTACTCATGAGTAATTGGGTCAAAGGCTAATATAGATGCACTTTTGGGCCCAAGGTTGACTCACGAAGTTTTGGGCTGAAGGCAAGTTGTAACGCGTGTTTTTGGCCCCAGCTATAATACTTGTGCCCAAGACTAATACTCATGTGCACTTTGGCCAAAGGCTAATAATATTCATATGTTTTTGGCCCAAATTAATACTCACAAAATTTTTGGGTTGAAGGCTATTAATCATTTGTTTTGGGGTCAAAGGTTATAATCCATACATTTTTAGCCCCAAGGTTAATAATCATGATTTTTTTGAGCAGAATGCTAACATTCATGTGTTTATAGGTCTAAGGTTGAGGTTGAGTTCTTTTCAGCAACTTGAAACAACAACTTCCTCGGTTTCCGTCAACACGCTTCCCAAACTGCTAAACGATGCGTTTTGTGAAATATATAGAAGTTCTTTAAAAAAAATCAAATAAATCCATTTATTAAATTTATAATAGTTAATACTCCCTCCATCCTCAAATGTAAGACATATTTCTTTTGTCACCAAGACAAAGGAGAAATTAACTCATCTCCCATGTAACAAAATCAAGGAACTATATGCATGCAACCAATGAATATTAAGATGGTTGCTTGGGTTCCTGTCAACAATTAATTTAGCACATGAAGACTCCAAATATAATCATCTCTTTTAGAAAAACCAAAAAAAAAAAAAGCCTAACACCTTTGGATGGAGGGAGTACGTAATTAATTATGTGCTAATGATATGCCCCGTTTCCGAGCTGCGAACCGCTGCAGCCAAACTGCTGGTTCGAACTAGCCCTAAGACTAAAGAAATTATGAGGCAAAAGCTAATATTCATGTGTTTTTTGACCCAAGGCTAACACTCTTGAAATTTTTAGACGAAGCCCAAATTCATGCACTTTTGGTCCCAAGGTCAATACTAATGAAATTTTGTGCCCAAGGTTAATACTTGTATGTTTTTTTGGTGGAAAAGTAATACACCTGTGTATTTGGAGTAAAGGCAAATATTCTTGTGTTTTTTCAGCTCAAGGATGATATTCATGACATTTTGAGTGAAGGTAATATTTATGTGATTTGGGCTCGAAGGTAATATTCATGTGTTTTTAAGCTGAAGGCTAAACAATCATGCATTTTTGGCCCAAGCTAACATTCATTTGTTTTTGGGCCCAAGGTTAATACTCATGTGTTTTTGGACCAAAGACTTAATAGTTGTGTAATTGAGGTGAAGGCTATAGTCAACCATTTTTGGGCCCAAGGTTAATTTTTGGCCAAACGGGAATAGTCATCCATTTTTAGCCATAGTTTAATAGTCTTCATATTTTAGGCCGAACGCTAACACTTACTGTGTATGTGATTTATATTTCAAGAAAATATTATAAGGCAAGAAAAGAAACATACCTCATTCAAGAATTCTCGGATGCCTTGATAGGAGTCATTTGTGAGAAGTTTGACTGCGATTTCTCTCCCATCTGTAAGCTTTCCATAGTATACTATGCCAAACCCTCCCGAACCAATTCTTCTGTCAAATTTGTCAGTAGCATCTTCAATTTCAGACAATGCAAATCTGTGCGCCGATTCCGTGGCCACTTCACTGAAAAATGAGCCTAGCTTTTTTGCTGGTGCCGCAATAACAACAGTTTCTGGAGACACAAAGTAATTACTACGCGACCATACACCATACCAGATATGCCCAATGAGCTAAAGAATACGCACCGTCCGATGATTTCTTCTTCCTTTTGCATGTGAACAGGTAACAAACAATAGCAGCAACAAGAATCAAAATGGCCCCAACCACAGCACATACAATAATTACTATAGTGCGGCCAGTGTTACTGTGTCCCATGCGAAGGTCACTGTTTCCTGAGAAGCTGCATACAGGTAACAGATCAGAACAAACAGCACAATCCTATGCACAAGTTAGGTACTCGATTTACATGGGAAACAAATATATACTTTCATCGAAGGTAAATGAACCTTGCTAAGCCACACTGGAGTTCATATAGGCACAAAAGTATGCACTGCTCATATCAAATGATTAAGCTATGCTTAAAGAAAAAGCTACACATACTTGAAAATAATGCTCTTTTTGAAAAGCGCTTGTGGGACCTCTCCAGACAGCTTATTGTTCTGAATATACCTGTGAAGGCTTGGATCAGTAAGGTATTTTCGTTTCAATACAATGAATAAAGCAGTAAAATGAGATAAAATCTATAGCGATGATGCATGTTGAGGTCTTGAGGATCATAAGAACAAAATAACAGCACAAATTCATATTTACTGCACTTGCAATACAAATAGCATGGGGGTGGAAAGAAAGTGTACTGAAGCGTATAACTTACAACTCTTTCAGGTTAGGTAGTTCTCCCAAGGAAGGTGGCAATGCACCGGTTAATTGGTTGTCCTCAAGGTGACTGCAGTGCAGACACAAGCACCCTAAGTGCTAAATTACAAGAATAATGTTTCCAGGATGCACTATCAAAATAATGGGAAACTCACATATATTGCAAATCATGGCATCCAGTGAAATCAGGAATTTGACCAGTAAATGAGTTACCATCAAGCTTTCTGAATTTGAAGAAATAAATTTATCAGAAAAAAGCCAACTACAAAGAGGGGAGAGCAAAAAATAAACTATTCTGATCTTACAGTTCAACCAGCCCCGATAGCTTCGTTAATTCCACAGGGATACTCCCTGTAATGTTCTTCCCTGACAATGAGCTGCAAGAAATGATCCTTAGATCTCAAATGTTCAAATATTGAGCACAAAAACTCAAAATTGAAGGCAGATTGACAGGATCATCTTACATTGAAAATATCCTAGGTGCTGCCTCAGAACTGCATTGCACCCAAGACCATGATGCTGGTAAGCAAGGGTCACCACCCTCTTGTGCCCAACCTGCTTCTGGATACCGTGAGACCAAGCTGGCCATAATGTTTGCTGTCAATATAACCAGAAGCCCAAATTATAACACAGTAGGTGTATATTTCCATTTATTCTACAACACAGACAGACAGACAGACAATTGCTTACCATCTTGAGATCCCACAGAAATCTCTATATATTTGTAGATCTCCATGGCATTCAATATAGGTCCCTCTGACGAATCATTAGTCTTCTTGAATCCAAAAGAGAAAACAAATGGAAGTGGAATATTTGTGTAGCCTGGTTCATATAGACAATACTTTCCCTGAGCATTCTCTTCCACATCAACAGTTGGTTTACTGAATTCTGGCTTGCCTGGAATGACTAACTTAAATTTCCTAGTTTGATTTGGGGCCAAATCTTCAATTTCTGCAAAATATGAGACTCCCCATGCATTTCCTGGGAAATCTTCCAAATCAATCCGGTAGGTCAAGGATCCATTTTTGCCAACAACTGCAGTTTGCATGACCCTTTGAGGTGGTTCTTCGTTGGTACTGACGAATATGGGTTTTGTAGTTGATATTCTCTCCGTCCCCGGAGCAACATCGACAAGGTAATTTGCTCGCCTCACTAAATCAGACTCCCATATTCTATCAAATGGATCATCAGGATACCTGAAAACATCATCAACAACAAATTCTTTAGCCAGATATTGTAACGAAAGTATGAACAGTGGTGCTATGCAGCAGTAGTAGCGCATACCTGACTGATGCATTGCTTTCAGCACCAAAATTGATCCTTGCAGAGAGTCTAAGAAAGAACTGTTTTTCATCAGTGGTGTAGTAAAGGGAACCGTTAAATTGGCGAAGCTCGAGAGTAGAAATAAAGGGCTGTCCAGTGCTGGCATTAGAGAGGCAAACGCTGAGTGTTGGAGCAGCAGCGAGGATAATCGCCTCCTGGACGACTGGGGTGGTGGCATCATCAATGACAACGGTGGTCCATGGGGTCGGTCCAAGGGAGAGATCAAACTTTGGGTAGACATTGCTGTTGTCGAAGTTGCCGTAGAGGAAGGTTGCTCTAACAAGGTAACGTGTTCTGTTCCTGACATTCATGGTGTAGCAATACTTCCTGTTATCTGCTGGAAAAGAGCGAACGGTGGTATATTGCTGCAATTGTTGATTTTGGAGCAAGAGGTTCGCTTCCTGGCCAGCAGAGACAAACTTGGCATCAGAAGTCCACTGGATCCCAATGCCATCCGTGTAATCATCGTCTCCCCCACAATCCAAGCTGATGAAACCTGCATGCAACAAATCAAAGATGGGATTTTCTTTTAGAGATTTATATTTGGAGATGGATTTGATTTCCCTGCCCTGAAGCTGAAGCGGGTGCAGCGAATGGTAAAGAAGGGTGGTAATCAGTGAGTTCCAAGAAAAAGACGAGAGTGACTGACCAGGCTGAGCATTGGAGAGCGAGAAGGCGAGGAAGAGGAGCACAAGAGCGGCGGCGGCGGCGGAAGCAGACGGCATCTGTATTGATGATGGATTGATTAGCACAGCCGCGGGTGCGGGCTGGTGAATCAATCCATATGCTCCCTCCTTGGAACAAGTCCTAAAACAATAAGGAAAATGATTGAAATTTTGTTGGTAGTTGGGGCTGGGAGAGGGGCAATCACCAATTCTCTCTCTCTCACACACAGGCAAGAAAGAGCTCAACCAGAAACAGCAAGGGGAGTGAAGAGAATACCAAACCAAGCACTAGCACGCACCTTGTAATTGTAGGAGTATTCCAAGAAGAAGAAGAAGAAGAGCAGGAGGAAGGGGAAAGAAGAAGACAGGAGGGTCCCAATCCCAGTCTCCTGCTCTCACTCACAGCCAGCCTCTGCACCC
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| CDS seq | ATGCCGTCTGCTTCCGCCGCCGCCGCCGCTCTTGTGCTCCTCTTCCTCGCCTTCTCGCTCTCCAATGCTCAGCCTGGTTTCATCAGCTTGGATTGTGGGGGAGACGATGATTACACGGATGGCATTGGGATCCAGTGGACTTCTGATGCCAAGTTTGTCTCTGCTGGCCAGGAAGCGAACCTCTTGCTCCAAAATCAACAATTGCAGCAATATACCACCGTTCGCTCTTTTCCAGCAGATAACAGGAAGTATTGCTACACCATGAATGTCAGGAACAGAACACGTTACCTTGTTAGAGCAACCTTCCTCTACGGCAACTTCGACAACAGCAATGTCTACCCAAAGTTTGATCTCTCCCTTGGACCGACCCCATGGACCACCGTTGTCATTGATGATGCCACCACCCCAGTCGTCCAGGAGGCGATTATCCTCGCTGCTGCTCCAACACTCAGCGTTTGCCTCTCTAATGCCAGCACTGGACAGCCCTTTATTTCTACTCTCGAGCTTCGCCAATTTAACGGTTCCCTTTACTACACCACTGATGAAAAACAGTTCTTTCTTAGACTCTCTGCAAGGATCAATTTTGGTGCTGAAAGCAATGCATCAGTCAGGTATCCTGATGATCCATTTGATAGAATATGGGAGTCTGATTTAGTGAGGCGAGCAAATTACCTTGTCGATGTTGCTCCGGGGACGGAGAGAATATCAACTACAAAACCCATATTCGTCAGTACCAACGAAGAACCACCTCAAAGGGTCATGCAAACTGCAGTTGTTGGCAAAAATGGATCCTTGACCTACCGGATTGATTTGGAAGATTTCCCAGGAAATGCATGGGGAGTCTCATATTTTGCAGAAATTGAAGATTTGGCCCCAAATCAAACTAGGAAATTTAAGTTAGTCATTCCAGGCAAGCCAGAATTCAGTAAACCAACTGTTGATGTGGAAGAGAATGCTCAGGGAAAGTATTGTCTATATGAACCAGGCTACACAAATATTCCACTTCCATTTGTTTTCTCTTTTGGATTCAAGAAGACTAATGATTCGTCAGAGGGACCTATATTGAATGCCATGGAGATCTACAAATATATAGAGATTTCTGTGGGATCTCAAGATGCAAACATTATGGCCAGCTTGGTCTCACGGTATCCAGAAGCAGGTTGGGCACAAGAGGGTGGTGACCCTTGCTTACCAGCATCATGGTCTTGGGTGCAATGCAGTTCTGAGGCAGCACCTAGGATATTTTCAATCTCATTGTCAGGGAAGAACATTACAGGGAGTATCCCTGTGGAATTAACGAAGCTATCGGGGCTGGTTGAACTAAAGCTTGATGGTAACTCATTTACTGGTCAAATTCCTGATTTCACTGGATGCCATGATTTGCAATATATTCACCTTGAGGACAACCAATTAACCGGTGCATTGCCACCTTCCTTGGGAGAACTACCTAACCTGAAAGAGTTGTATATTCAGAACAATAAGCTGTCTGGAGAGGTCCCACAAGCGCTTTTCAAAAAGAGCATTATTTTCAACTTCTCAGGAAACAGTGACCTTCGCATGGGACACAGTAACACTGGCCGCACTATAGTAATTATTGTATGTGCTGTGGTTGGGGCCATTTTGATTCTTGTTGCTGCTATTGTTTGTTACCTGTTCACATGCAAAAGGAAGAAGAAATCATCGGACGAAACTGTTGTTATTGCGGCACCAGCAAAAAAGCTAGGCTCATTTTTCAGTGAAGTGGCCACGGAATCGGCGCACAGATTTGCATTGTCTGAAATTGAAGATGCTACTGACAAATTTGACAGAAGAATTGGTTCGGGAGGGTTTGGCATAGTATACTATGGAAAGCTTACAGATGGGAGAGAAATCGCAGTCAAACTTCTCACAAATGACTCCTATCAAGGCATCCGAGAATTCTTGAATGAGGTAACATTGCTTTCAAGAATTCATCATAGAAACCTGGTGAGCTTCCTTGGTTACAGCCAGCAAGATGGTAAAAATATACTTGTGTATGAATTCATGCATAACGGGACGTTAAAAGAGCACCTCCGTGGAGGCCCTGATGATGTAAAAATAACTAGCTGGGTCAAGCGTCTTGAGATAGCAGAAGATGCTGCAAAAGGAATAGAGTATCTCCACACAGGATGCTCCCCAACTATCATCCACAGAGACCTCAAGAGCAGTAACATTCTCCTTGACAAGAACATGAGAGCAAAAGTTGCAGACTTTGGCTTGTCAAAACCTGTTGTCGACGGGTCTCATGTATCAAGTATAGTTAGAGGAACAGTTGGATATCTGGACCCAGAGTACTATATCTCGCAGCAGCTAACAGAGAAGAGTGATATGTACAGTTTTGGTGTCATTTTACTTGAGCTAATCTCAGGCCATGAGCCAATCTCAAATGACAACTTTGGGCTCCACTGCCGTAACATTGTTGAATGGGCTAGATCGCACATGGAGAGTGGGGATATCCACGGCATCATTGATCAGTCGTTAGACGCAGGGTACGACCTGCAGTCAGTGTGGAAGATTGCGGAGGTGGCGACGATGTGCGTGAAGCCCAAGGGGGTGCTGAGGCCGTCCATCTCGGAGGTGCTCAAGGAGATTCAGGACGCCATTGCCATCGAGCTGCAACGGGAGCTGCCCTCCAGCATTCACCACCTCATGTCCAAGACGTCTCCCTCCGAAGCCGTCAACACGACAGGCAGCGTACAAGACCTGGAGCAGAATGCTTCGTTCGATGAGCTGCTCATGCGCCCAGGTCTCAGGTAG
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| Protein seq | MPSASAAAAALVLLFLAFSLSNAQPGFISLDCGGDDDYTDGIGIQWTSDAKFVSAGQEANLLLQNQQLQQYTTVRSFPADNRKYCYTMNVRNRTRYLVRATFLYGNFDNSNVYPKFDLSLGPTPWTTVVIDDATTPVVQEAIILAAAPTLSVCLSNASTGQPFISTLELRQFNGSLYYTTDEKQFFLRLSARINFGAESNASVRYPDDPFDRIWESDLVRRANYLVDVAPGTERISTTKPIFVSTNEEPPQRVMQTAVVGKNGSLTYRIDLEDFPGNAWGVSYFAEIEDLAPNQTRKFKLVIPGKPEFSKPTVDVEENAQGKYCLYEPGYTNIPLPFVFSFGFKKTNDSSEGPILNAMEIYKYIEISVGSQDANIMASLVSRYPEAGWAQEGGDPCLPASWSWVQCSSEAAPRIFSISLSGKNITGSIPVELTKLSGLVELKLDGNSFTGQIPDFTGCHDLQYIHLEDNQLTGALPPSLGELPNLKELYIQNNKLSGEVPQALFKKSIIFNFSGNSDLRMGHSNTGRTIVIIVCAVVGAILILVAAIVCYLFTCKRKKKSSDETVVIAAPAKKLGSFFSEVATESAHRFALSEIEDATDKFDRRIGSGGFGIVYYGKLTDGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRNLVSFLGYSQQDGKNILVYEFMHNGTLKEHLRGGPDDVKITSWVKRLEIAEDAAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPVVDGSHVSSIVRGTVGYLDPEYYISQQLTEKSDMYSFGVILLELISGHEPISNDNFGLHCRNIVEWARSHMESGDIHGIIDQSLDAGYDLQSVWKIAEVATMCVKPKGVLRPSISEVLKEIQDAIAIELQRELPSSIHHLMSKTSPSEAVNTTGSVQDLEQNASFDELLMRPGLR |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g67720 [UniProtKB/Swiss-Prot:C0LGI2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0102900 | OsNip_11t0102900-01 | Chr11 | 117292 | 124378 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCGTCTGCTTCCGCCGCCGCCGCCGCTCTTGTGCTCCTCTTCCTCGCCTTCTCGCTCTCCAATGCTCAGCCTGGTTTCATCAGCTTGGATTGTGGGGGAGACGATGATTACACGGATGGCATTGGGATCCAGTGGACTTCTGATGCCAAGTTTGTCTCTGCTGGCCAGGAAGCGAACCTCTTGCTCCAAAATCAACAATTGCAGCAATATACCACCGTTCGCTCTTTTCCAGCAGATAACAGGAAGTATTGCTACACCATGAATGTCAGGAACAGAACACGTTACCTTGTTAGAGCAACCTTCCTCTACGGCAACTTCGACAACAGCAATGTCTACCCAAAGTTTGATCTCTCCCTTGGACCGACCCCATGGACCACCGTTGTCATTGATGATGCCACCACCCCAGTCGTCCAGGAGGCGATTATCCTCGCTGCTGCTCCAACACTCAGCGTTTGCCTCTCTAATGCCAGCACTGGACAGCCCTTTATTTCTACTCTCGAGCTTCGCCAATTTAACGGTTCCCTTTACTACACCACTGATGAAAAACAGTTCTTTCTTAGACTCTCTGCAAGGATCAATTTTGGTGCTGAAAGCAATGCATCAGTCAGGTATCCTGATGATCCATTTGATAGAATATGGGAGTCTGATTTAGTGAGGCGAGCAAATTACCTTGTCGATGTTGCTCCGGGGACGGAGAGAATATCAACTACAAAACCCATATTCGTCAGTACCAACGAAGAACCACCTCAAAGGGTCATGCAAACTGCAGTTGTTGGCAAAAATGGATCCTTGACCTACCGGATTGATTTGGAAGATTTCCCAGGAAATGCATGGGGAGTCTCATATTTTGCAGAAATTGAAGATTTGGCCCCAAATCAAACTAGGAAATTTAAGTTAGTCATTCCAGGCAAGCCAGAATTCAGTAAACCAACTGTTGATGTGGAAGAGAATGCTCAGGGAAAGTATTGTCTATATGAACCAGGCTACACAAATATTCCACTTCCATTTGTTTTCTCTTTTGGATTCAAGAAGACTAATGATTCGTCAGAGGGACCTATATTGAATGCCATGGAGATCTACAAATATATAGAGATTTCTGTGGGATCTCAAGATGCAAACATTATGGCCAGCTTGGTCTCACGGTATCCAGAAGCAGGTTGGGCACAAGAGGGTGGTGACCCTTGCTTACCAGCATCATGGTCTTGGGTGCAATGCAGTTCTGAGGCAGCACCTAGGATATTTTCAATCTCATTGTCAGGGAAGAACATTACAGGGAGTATCCCTGTGGAATTAACGAAGCTATCGGGGCTGGTTGAACTAAAGCTTGATGGTAACTCATTTACTGGTCAAATTCCTGATTTCACTGGATGCCATGATTTGCAATATATTCACCTTGAGGACAACCAATTAACCGGTGCATTGCCACCTTCCTTGGGAGAACTACCTAACCTGAAAGAGTTGTATATTCAGAACAATAAGCTGTCTGGAGAGGTCCCACAAGCGCTTTTCAAAAAGAGCATTATTTTCAACTTCTCAGGAAACAGTGACCTTCGCATGGGACACAGTAACACTGGCCGCACTATAGTAATTATTGTATGTGCTGTGGTTGGGGCCATTTTGATTCTTGTTGCTGCTATTGTTTGTTACCTGTTCACATGCAAAAGGAAGAAGAAATCATCGGACGAAACTGTTGTTATTGCGGCACCAGCAAAAAAGCTAGGCTCATTTTTCAGTGAAGTGGCCACGGAATCGGCGCACAGATTTGCATTGTCTGAAATTGAAGATGCTACTGACAAATTTGACAGAAGAATTGGTTCGGGAGGGTTTGGCATAGTATACTATGGAAAGCTTACAGATGGGAGAGAAATCGCAGTCAAACTTCTCACAAATGACTCCTATCAAGGCATCCGAGAATTCTTGAATGAGGTAACATTGCTTTCAAGAATTCATCATAGAAACCTGGTGAGCTTCCTTGGTTACAGCCAGCAAGATGGTAAAAATATACTTGTGTATGAATTCATGCATAACGGGACGTTAAAAGAGCACCTCCGTGGAGGCCCTGATGATGTAAAAATAACTAGCTGGGTCAAGCGTCTTGAGATAGCAGAAGATGCTGCAAAAGGAATAGAGTATCTCCACACAGGATGCTCCCCAACTATCATCCACAGAGACCTCAAGAGCAGTAACATTCTCCTTGACAAGAACATGAGAGCAAAAGTTGCAGACTTTGGCTTGTCAAAACCTGTTGTCGACGGGTCTCATGTATCAAGTATAGTTAGAGGAACAGTTGGATATCTGGACCCAGAGTACTATATCTCGCAGCAGCTAACAGAGAAGAGTGATATGTACAGTTTTGGTGTCATTTTACTTGAGCTAATCTCAGGCCATGAGCCAATCTCAAATGACAACTTTGGGCTCCACTGCCGTAACATTGTTGAATGGGCTAGATCGCACATGGAGAGTGGGGATATCCACGGCATCATTGATCAGTCGTTAGACGCAGGGTACGACCTGCAGTCAGTGTGGAAGATTGCGGAGGTGGCGACGATGTGCGTGAAGCCCAAGGGGGTGCTGAGGCCGTCCATCTCGGAGGTGCTCAAGGAGATTCAGGACGCCATTGCCATCGAGCTGCAACGGGAGCTGCCCTCCAGCATTCACCACCTCATGTCCAAGACGTCTCCCTCCGAAGCCGTCAACACGACAGGCAGCGTACAAGACCTGGAGCAGAATGCTTCGTTCGATGAGCTGCTCATGCGCCCAGGTCTCAGGTAG
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| Protein seq | MPSASAAAAALVLLFLAFSLSNAQPGFISLDCGGDDDYTDGIGIQWTSDAKFVSAGQEANLLLQNQQLQQYTTVRSFPADNRKYCYTMNVRNRTRYLVRATFLYGNFDNSNVYPKFDLSLGPTPWTTVVIDDATTPVVQEAIILAAAPTLSVCLSNASTGQPFISTLELRQFNGSLYYTTDEKQFFLRLSARINFGAESNASVRYPDDPFDRIWESDLVRRANYLVDVAPGTERISTTKPIFVSTNEEPPQRVMQTAVVGKNGSLTYRIDLEDFPGNAWGVSYFAEIEDLAPNQTRKFKLVIPGKPEFSKPTVDVEENAQGKYCLYEPGYTNIPLPFVFSFGFKKTNDSSEGPILNAMEIYKYIEISVGSQDANIMASLVSRYPEAGWAQEGGDPCLPASWSWVQCSSEAAPRIFSISLSGKNITGSIPVELTKLSGLVELKLDGNSFTGQIPDFTGCHDLQYIHLEDNQLTGALPPSLGELPNLKELYIQNNKLSGEVPQALFKKSIIFNFSGNSDLRMGHSNTGRTIVIIVCAVVGAILILVAAIVCYLFTCKRKKKSSDETVVIAAPAKKLGSFFSEVATESAHRFALSEIEDATDKFDRRIGSGGFGIVYYGKLTDGREIAVKLLTNDSYQGIREFLNEVTLLSRIHHRNLVSFLGYSQQDGKNILVYEFMHNGTLKEHLRGGPDDVKITSWVKRLEIAEDAAKGIEYLHTGCSPTIIHRDLKSSNILLDKNMRAKVADFGLSKPVVDGSHVSSIVRGTVGYLDPEYYISQQLTEKSDMYSFGVILLELISGHEPISNDNFGLHCRNIVEWARSHMESGDIHGIIDQSLDAGYDLQSVWKIAEVATMCVKPKGVLRPSISEVLKEIQDAIAIELQRELPSSIHHLMSKTSPSEAVNTTGSVQDLEQNASFDELLMRPGLR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0102900 | OsNip_11t0102900-02 | Chr11 | 117290 | 124265 | - | IsoSeq | ||
| CDS seq | ATGTCAGGAACAGAACACGTTACCTTGTTAGAGCAACCTTCCTCTACGGCAACTTCGACAACAGCAATGTCTACCCAAAGTTTGATCTCTCCCTTGGACCGACCCCATGGACCACCGTTGTCATTGATGATGCCACCACCCCAGTCGTCCAGGAGGCGATTATCCTCGCTGCTGCTCCAACACTCAGCGTTTGCCTCTCTAATGCCAGCACTGGACAGCCCTTTATTTCTACTCTCGAGCTTCGCCAATTTAACGGTTCCCTTTACTACACCACTGATGAAAAACAGTTCTTTCTTAGACTCTCTGCAAGGATCAATTTTGGTGCTGAAAGCAATGCATCAGTCAGGTATCCTGATGATCCATTTGATAGAATATGGGAGTCTG
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| Protein seq | MSGTEHVTLLEQPSSTATSTTAMSTQSLISPLDRPHGPPLSLMMPPPQSSRRRLSSLLLQHSAFASLMPALDSPLFLLSSFANLTVPFTTPLMKNSSFLDSLQGSILVLKAMHQSGILMIHLIEYGSL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.947767 | 1.286543 | 5.212005 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0102500 | RBH | 5.048846 | 4.051795 | 4.326017 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g01200 | RBH | 1.126842 | 0.740266 | 1.228090 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0102900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000180 | RBH | 0.427710 | 9.379315 | 6.137022 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000180 | RBH | 0.118312 | 3.571691 | 3.544569 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000200 | RBH | 0.239423 | 16.231007 | 13.415030 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000190 | RBH | 0.097814 | 0.316815 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000170 | RBH | 3.099979 | 18.377777 | 20.090588 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0002000 | RBH | 4.556156 | 10.168432 | 6.2693345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000190 | RBH | 0.195244 | 1.542177 | 1.205687 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0002000 | RBH | 7.492224 | 12.9469045 | 26.125746 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000060 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000180 | RBH | 0.366671 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000180 | RBH | 0.000000 | 22.162819 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000180 | RBH | 0.525861 | 0.0 | 1.213295 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000180 | RBH | 0.136415 | 11.630368 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000190 | RBH | 0.239356 | 5.909908 | 4.781610 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000180 | RBH | 0.337918 | 20.233103 | 7.138532 |
