Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0533800 | OGI:10063500 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:20764086-20766209 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAACAGATCCCAGTTCTCAATTACAGCAGCTGTCGAACTACACCCTACGCACTACAGTTTAGTTTCTTCCATGTCTCCGGCGTCCATTGCAGCGCTTCGCCACCTCGCCGCCGTGCTCTCCATCCTCGCTCACTGCCTCCTCCTCTCTTCCGCCGACGTCGATTTCATCTACAACGGCTTCCGCAACGCCGCCAACCTGAGCCTAGACGGCTCGGCCACCGTCCTGCGCGGCGGCGCGCTGCAGCTCACCAACGACAGCAACAATATCATGGGCCACGCGTTCTTCGACTCCCCGGTGCAGATGGTGAGCGACGCCGCCGTCGTCTCCTTCAGCACGGCCTTCGTCTTCGACATCGTCACCAACGGCAGCGTCGGCGGCCATGGCTTGGCTTTCGTTGTCGCCGCCTCCAAGGTGCTCCCCGGCGCAACCGCCGAGCAGTATCTTGGCCTCCTCGGGAAGAGCAACATGGGTGACCCCTCCAACCACGTGTTCGCCGTCGAGTTCGACACTGTGCAGGCGAACGGGCTCCTGAACGAGACGAACGGCAACCACGTTGGCGTCGACCTAAACAGCCTCGTGTCGAACGTGTCGGAGCCGGCCGCCTACTTCACCGACGGCGGCGGTGGCAAGAGGAACTTGACGTTGGAGAGCGCGCAGCCGATTCAGGCGTGGGTAGACTACGACGGCAGCGCCAAGATCCTCAACGTCACCATCGCTCCGGTGGCGTCGACGGTGCCGACGCGGCCTCGCCGGCCGCTCATATCGCACGCCGTCGACCTCCTGCCGATCTTCAAGCAGGAAATGTACGTCGGCTTCTCGTCGTCGACGGGGAAGCTCGCGAGCTCGCACTACGTCCTCGCATGGAGCTTCCGGACCGGCGGCGGCGCCGCGCGGCCGATCGATCTCTCTCGGTTGCCGAGCGTCCCAAAGAAGCCGGCGCCGCCGCCTTCCGCGTCCGTCGTCGTCAAGATCGTTGCTCTGACCTGCGCTGCCACGGTCACAGTGATCGTGGCGGCGATCGGCGTCGCGCTCTGGCTGCGGCGGCGGGCGGCGCTCGCCGACACGCTCGAGGAGTGGGAGCTTGACCACCCGCACAGGCTCCCGTACAGAGAGCTCTACATGGCGACGAAGGGGTTCAAGAACAGCGAGCTCCTCGGCGCCGGCGGATTCGGCGAGGTGTACAGGGGCGTGCTCCGGCGATCCGGCGACGTGGTGGCCGTGAAGAGGATCTCGAGCAACGGGAGGCAGGGGATGCGCGAGTTCGTCGCCGAGGTGGCCAGCCTCGGGCGCATGCGGCACCGCAACCTGGTCGAGCTCCGCGGGTGGTGCAAGCGCGGGCATGACCTCCTCCTGGTCTACGAGTTCATGCCCAATGGCAGCCTCGACGCGCTCCTGTTCGGCGGCGCACCGGCGACGGCGACGGCGACGGCGCTGACGTGGGAGCAGCGGGTGAGGATACTCAGGGGCGTGGCGTCCGGGCTGGTGTACCTGCACGAGGAGTGGGAGCAGGTGGTGGTGCACCGCGACGTGAAGGCCAGCAACGTGCTGCTCGGCGCCGACGCGAGCGCCGCGCGGCTCGGCGACTTCGGCCTCGCGCGGCTCTACGAGCACGGCGGCGACCCGGCCACGACGCGCGTGGTCGGGACGCTGGGCTACATGGCGCCGGAGCTCACCGTGACGGGCAAGGCCACCACGGCCACCGACGTGTTCGCCTACGGCGCGCTGCTCCTCGAGGCGGCGTGCGGGCGCCGCCCCATCGACCCGGCCACCGGCGTCAACCTGCTGCGCTGGGTCCGGGAGCACGGTGCCAGGGGCGAGCTGGTGCACGCCGTCGACGAGAGGCTCGACGGGCGCTACGACAAGGAGGAGGCGAGGCTGGTGCTCTGGCTCGGCCTCGCGTGCAGCCAGGCGAGGCCGGAGGCGCGGCCGAGCATGAGGCAGGTCTGCCAGTACCTGGACGGCGAGGAGGACGTACCGGAGGAGGCCGTGCTCGTCTTCTCCGACGTCGATTCCATCGACTTCGGGTCGTTGACGTCGCTGACATGGTCGTCGTGCGCTACAATGTCCGTCGGCTCGCTGAACGGTGGCCGGTGAACAGCTCTGCTGAACATCAGCCTCAAG
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| CDS seq | ATGAACAGATCCCAGTTCTCAATTACAGCAGCTGTCGAACTACACCCTACGCACTACAGTTTAGTTTCTTCCATGTCTCCGGCGTCCATTGCAGCGCTTCGCCACCTCGCCGCCGTGCTCTCCATCCTCGCTCACTGCCTCCTCCTCTCTTCCGCCGACGTCGATTTCATCTACAACGGCTTCCGCAACGCCGCCAACCTGAGCCTAGACGGCTCGGCCACCGTCCTGCGCGGCGGCGCGCTGCAGCTCACCAACGACAGCAACAATATCATGGGCCACGCGTTCTTCGACTCCCCGGTGCAGATGGTGAGCGACGCCGCCGTCGTCTCCTTCAGCACGGCCTTCGTCTTCGACATCGTCACCAACGGCAGCGTCGGCGGCCATGGCTTGGCTTTCGTTGTCGCCGCCTCCAAGGTGCTCCCCGGCGCAACCGCCGAGCAGTATCTTGGCCTCCTCGGGAAGAGCAACATGGGTGACCCCTCCAACCACGTGTTCGCCGTCGAGTTCGACACTGTGCAGGCGAACGGGCTCCTGAACGAGACGAACGGCAACCACGTTGGCGTCGACCTAAACAGCCTCGTGTCGAACGTGTCGGAGCCGGCCGCCTACTTCACCGACGGCGGCGGTGGCAAGAGGAACTTGACGTTGGAGAGCGCGCAGCCGATTCAGGCGTGGGTAGACTACGACGGCAGCGCCAAGATCCTCAACGTCACCATCGCTCCGGTGGCGTCGACGGTGCCGACGCGGCCTCGCCGGCCGCTCATATCGCACGCCGTCGACCTCCTGCCGATCTTCAAGCAGGAAATGTACGTCGGCTTCTCGTCGTCGACGGGGAAGCTCGCGAGCTCGCACTACGTCCTCGCATGGAGCTTCCGGACCGGCGGCGGCGCCGCGCGGCCGATCGATCTCTCTCGGTTGCCGAGCGTCCCAAAGAAGCCGGCGCCGCCGCCTTCCGCGTCCGTCGTCGTCAAGATCGTTGCTCTGACCTGCGCTGCCACGGTCACAGTGATCGTGGCGGCGATCGGCGTCGCGCTCTGGCTGCGGCGGCGGGCGGCGCTCGCCGACACGCTCGAGGAGTGGGAGCTTGACCACCCGCACAGGCTCCCGTACAGAGAGCTCTACATGGCGACGAAGGGGTTCAAGAACAGCGAGCTCCTCGGCGCCGGCGGATTCGGCGAGGTGTACAGGGGCGTGCTCCGGCGATCCGGCGACGTGGTGGCCGTGAAGAGGATCTCGAGCAACGGGAGGCAGGGGATGCGCGAGTTCGTCGCCGAGGTGGCCAGCCTCGGGCGCATGCGGCACCGCAACCTGGTCGAGCTCCGCGGGTGGTGCAAGCGCGGGCATGACCTCCTCCTGGTCTACGAGTTCATGCCCAATGGCAGCCTCGACGCGCTCCTGTTCGGCGGCGCACCGGCGACGGCGACGGCGACGGCGCTGACGTGGGAGCAGCGGGTGAGGATACTCAGGGGCGTGGCGTCCGGGCTGGTGTACCTGCACGAGGAGTGGGAGCAGGTGGTGGTGCACCGCGACGTGAAGGCCAGCAACGTGCTGCTCGGCGCCGACGCGAGCGCCGCGCGGCTCGGCGACTTCGGCCTCGCGCGGCTCTACGAGCACGGCGGCGACCCGGCCACGACGCGCGTGGTCGGGACGCTGGGCTACATGGCGCCGGAGCTCACCGTGACGGGCAAGGCCACCACGGCCACCGACGTGTTCGCCTACGGCGCGCTGCTCCTCGAGGCGGCGTGCGGGCGCCGCCCCATCGACCCGGCCACCGGCGTCAACCTGCTGCGCTGGGTCCGGGAGCACGGTGCCAGGGGCGAGCTGGTGCACGCCGTCGACGAGAGGCTCGACGGGCGCTACGACAAGGAGGAGGCGAGGCTGGTGCTCTGGCTCGGCCTCGCGTGCAGCCAGGCGAGGCCGGAGGCGCGGCCGAGCATGAGGCAGGTCTGCCAGTACCTGGACGGCGAGGAGGACGTACCGGAGGAGGCCGTGCTCGTCTTCTCCGACGTCGATTCCATCGACTTCGGGTCGTTGACGTCGCTGACATGGTCGTCGTGCGCTACAATGTCCGTCGGCTCGCTGAACGGTGGCCGGTGA
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| Protein seq | MNRSQFSITAAVELHPTHYSLVSSMSPASIAALRHLAAVLSILAHCLLLSSADVDFIYNGFRNAANLSLDGSATVLRGGALQLTNDSNNIMGHAFFDSPVQMVSDAAVVSFSTAFVFDIVTNGSVGGHGLAFVVAASKVLPGATAEQYLGLLGKSNMGDPSNHVFAVEFDTVQANGLLNETNGNHVGVDLNSLVSNVSEPAAYFTDGGGGKRNLTLESAQPIQAWVDYDGSAKILNVTIAPVASTVPTRPRRPLISHAVDLLPIFKQEMYVGFSSSTGKLASSHYVLAWSFRTGGGAARPIDLSRLPSVPKKPAPPPSASVVVKIVALTCAATVTVIVAAIGVALWLRRRAALADTLEEWELDHPHRLPYRELYMATKGFKNSELLGAGGFGEVYRGVLRRSGDVVAVKRISSNGRQGMREFVAEVASLGRMRHRNLVELRGWCKRGHDLLLVYEFMPNGSLDALLFGGAPATATATALTWEQRVRILRGVASGLVYLHEEWEQVVVHRDVKASNVLLGADASAARLGDFGLARLYEHGGDPATTRVVGTLGYMAPELTVTGKATTATDVFAYGALLLEAACGRRPIDPATGVNLLRWVREHGARGELVHAVDERLDGRYDKEEARLVLWLGLACSQARPEARPSMRQVCQYLDGEEDVPEEAVLVFSDVDSIDFGSLTSLTWSSCATMSVGSLNGGR |
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| Function | L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0533800 | OsNip_10t0533800-00 | Chr10 | 20764086 | 20766209 | + | RAP2018-11-26 | ||
| CDS seq | ATGAACAGATCCCAGTTCTCAATTACAGCAGCTGTCGAACTACACCCTACGCACTACAGTTTAGTTTCTTCCATGTCTCCGGCGTCCATTGCAGCGCTTCGCCACCTCGCCGCCGTGCTCTCCATCCTCGCTCACTGCCTCCTCCTCTCTTCCGCCGACGTCGATTTCATCTACAACGGCTTCCGCAACGCCGCCAACCTGAGCCTAGACGGCTCGGCCACCGTCCTGCGCGGCGGCGCGCTGCAGCTCACCAACGACAGCAACAATATCATGGGCCACGCGTTCTTCGACTCCCCGGTGCAGATGGTGAGCGACGCCGCCGTCGTCTCCTTCAGCACGGCCTTCGTCTTCGACATCGTCACCAACGGCAGCGTCGGCGGCCATGGCTTGGCTTTCGTTGTCGCCGCCTCCAAGGTGCTCCCCGGCGCAACCGCCGAGCAGTATCTTGGCCTCCTCGGGAAGAGCAACATGGGTGACCCCTCCAACCACGTGTTCGCCGTCGAGTTCGACACTGTGCAGGCGAACGGGCTCCTGAACGAGACGAACGGCAACCACGTTGGCGTCGACCTAAACAGCCTCGTGTCGAACGTGTCGGAGCCGGCCGCCTACTTCACCGACGGCGGCGGTGGCAAGAGGAACTTGACGTTGGAGAGCGCGCAGCCGATTCAGGCGTGGGTAGACTACGACGGCAGCGCCAAGATCCTCAACGTCACCATCGCTCCGGTGGCGTCGACGGTGCCGACGCGGCCTCGCCGGCCGCTCATATCGCACGCCGTCGACCTCCTGCCGATCTTCAAGCAGGAAATGTACGTCGGCTTCTCGTCGTCGACGGGGAAGCTCGCGAGCTCGCACTACGTCCTCGCATGGAGCTTCCGGACCGGCGGCGGCGCCGCGCGGCCGATCGATCTCTCTCGGTTGCCGAGCGTCCCAAAGAAGCCGGCGCCGCCGCCTTCCGCGTCCGTCGTCGTCAAGATCGTTGCTCTGACCTGCGCTGCCACGGTCACAGTGATCGTGGCGGCGATCGGCGTCGCGCTCTGGCTGCGGCGGCGGGCGGCGCTCGCCGACACGCTCGAGGAGTGGGAGCTTGACCACCCGCACAGGCTCCCGTACAGAGAGCTCTACATGGCGACGAAGGGGTTCAAGAACAGCGAGCTCCTCGGCGCCGGCGGATTCGGCGAGGTGTACAGGGGCGTGCTCCGGCGATCCGGCGACGTGGTGGCCGTGAAGAGGATCTCGAGCAACGGGAGGCAGGGGATGCGCGAGTTCGTCGCCGAGGTGGCCAGCCTCGGGCGCATGCGGCACCGCAACCTGGTCGAGCTCCGCGGGTGGTGCAAGCGCGGGCATGACCTCCTCCTGGTCTACGAGTTCATGCCCAATGGCAGCCTCGACGCGCTCCTGTTCGGCGGCGCACCGGCGACGGCGACGGCGACGGCGCTGACGTGGGAGCAGCGGGTGAGGATACTCAGGGGCGTGGCGTCCGGGCTGGTGTACCTGCACGAGGAGTGGGAGCAGGTGGTGGTGCACCGCGACGTGAAGGCCAGCAACGTGCTGCTCGGCGCCGACGCGAGCGCCGCGCGGCTCGGCGACTTCGGCCTCGCGCGGCTCTACGAGCACGGCGGCGACCCGGCCACGACGCGCGTGGTCGGGACGCTGGGCTACATGGCGCCGGAGCTCACCGTGACGGGCAAGGCCACCACGGCCACCGACGTGTTCGCCTACGGCGCGCTGCTCCTCGAGGCGGCGTGCGGGCGCCGCCCCATCGACCCGGCCACCGGCGTCAACCTGCTGCGCTGGGTCCGGGAGCACGGTGCCAGGGGCGAGCTGGTGCACGCCGTCGACGAGAGGCTCGACGGGCGCTACGACAAGGAGGAGGCGAGGCTGGTGCTCTGGCTCGGCCTCGCGTGCAGCCAGGCGAGGCCGGAGGCGCGGCCGAGCATGAGGCAGGTCTGCCAGTACCTGGACGGCGAGGAGGACGTACCGGAGGAGGCCGTGCTCGTCTTCTCCGACGTCGATTCCATCGACTTCGGGTCGTTGACGTCGCTGACATGGTCGTCGTGCGCTACAATGTCCGTCGGCTCGCTGAACGGTGGCCGGTGA
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| Protein seq | MNRSQFSITAAVELHPTHYSLVSSMSPASIAALRHLAAVLSILAHCLLLSSADVDFIYNGFRNAANLSLDGSATVLRGGALQLTNDSNNIMGHAFFDSPVQMVSDAAVVSFSTAFVFDIVTNGSVGGHGLAFVVAASKVLPGATAEQYLGLLGKSNMGDPSNHVFAVEFDTVQANGLLNETNGNHVGVDLNSLVSNVSEPAAYFTDGGGGKRNLTLESAQPIQAWVDYDGSAKILNVTIAPVASTVPTRPRRPLISHAVDLLPIFKQEMYVGFSSSTGKLASSHYVLAWSFRTGGGAARPIDLSRLPSVPKKPAPPPSASVVVKIVALTCAATVTVIVAAIGVALWLRRRAALADTLEEWELDHPHRLPYRELYMATKGFKNSELLGAGGFGEVYRGVLRRSGDVVAVKRISSNGRQGMREFVAEVASLGRMRHRNLVELRGWCKRGHDLLLVYEFMPNGSLDALLFGGAPATATATALTWEQRVRILRGVASGLVYLHEEWEQVVVHRDVKASNVLLGADASAARLGDFGLARLYEHGGDPATTRVVGTLGYMAPELTVTGKATTATDVFAYGALLLEAACGRRPIDPATGVNLLRWVREHGARGELVHAVDERLDGRYDKEEARLVLWLGLACSQARPEARPSMRQVCQYLDGEEDVPEEAVLVFSDVDSIDFGSLTSLTWSSCATMSVGSLNGGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.421410 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0584100 | SBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g38960 | RBH | 0.0 | 0.0 | 0.103485 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0533800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0018160 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0018560 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0017930 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0018500 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0018240 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0342800 | RBH | 0.0062065 | 0 | 0.0087675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0018140 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0367500 | RBH | 0.035476 | 0 | 0.009895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0017900 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0017730 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0018370 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0017940 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0018460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G018140 | RBH | 0.0 | 0.0 | 0.205171 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0018250 | SBH | 0.850569 | 2.860229 | 3.102250 |
