Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0497500 | OGI:10048580 | 1/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:18955115-18957024 | ||||||||
| Gene Symbol | PPR794, PPR6, PPR6-794, PPR5, Rf5, Rf1a | ||||||||||
| DNA seq | ATAGTAGTGGCCAAGGTTGGTGACGGTGATGGTGGCATGTGATCCCCCAGATCTTCAGTGACCCAGAGAGGAGGGGACGGCGCGTGGTGAGCTACAAGGCATACTCAGTGGAGGGCAAGATCAAGGCCTCCCGTCCGTAGGGGACTCCGCTGCATCAAGGCCAACTGCTCCGAACTGATCAATTTCTGGTACGGATCACTTCTCCTTTCCTTTTTTTTTTCACCTTAAGCACTCTCTTGATTCTTCGCTGCTACCTCCCTTAATTTCTTTCAATATATTGTGGCACTTGATCATGGCGGAGACCCACCTTCCAGTGTGAATGGATTTTGTCAAAGAACTAAATTTATTCCATTAGCTTATTTTCTGATTACATGGAAGACATTCTTTTCTGGAATAAATACAGAACTAAATCCTGTTTCCTGAATAAAAGTTGTTAGTGTGTGGCATGGTGCATTTCCGCGCTTCTAAATTTTATAAAACCTGTTCATTCAATTTGAACCTGCATCCAATCCAATATTTTAGGTGCAGACAGGTGCTTGCGGTCAGGTTAAAGAAGTTGGCAAAAATGCTTCTGAAGAAAGGTTAATTGTTGTTTCATCTCAGGAGGTAATATGCAGATGATTATTCCAATTGGCATTGCCTTGCCATTTTTATCACGAGTCTTTACAATTTTATATCCTCCTACATATTCTTTCCAGATTCCAGATGATCCAGTGTCTCCAACAATTGAGGCGCTTATTTTGCTCCATAGTAAAGCAAGTACACTTGCTGAGAACCACCAGTTGACAACACGGCTTGTTGTACCATCAAACAAAGTTGGTTGTATTCTTGGGGAAGGTGGAAAGGTAATTACTGAAATGAGAAGACGGACTGGGGCTGAAATCCGAGTCTACTCAAAAGCAGATAAACCTAAGTACCTGTCTTTTGATGAGGAGCTTGTGCAGGTAATTTATTTGGCCATACCTACACCAGAGATCCATATATTACTTTTATAACTGCAGTTTTTACTTGTTAACATTTCATTGTGCTTTTACATTTGTTCCAAGCTTTCAGGTTGCTGGGCTTCCAGCTATTGAAAGAGGAGCCCTGACAGAGATTGCTTCGAGGCTTTGAACTAGGACACTCAGAGATGGAAGTTCTTCCAATAATCCGACACCTTTTGCCCCTGTTGATGGTCCTCCTGTTGATATCTTGCCTAACAAGGAATTCATGCTATATGGACGATCTGCTAATAGTCCCCCATATGGAGGGCCTGCTAATGATCCACCATATGGAAGACCTGCCATTGATCCACCATATGGAAGACCAATATCCACAATATGGAAGACCTGCCAATGATCCACCATATAGAAGACCTGTCAATGATACATCATATTGAGGGTTGGACAATGATGGGCCTCGTGATCAGGCCCGGTCCTGAGGGGGGTCGAATGGGGCGATCGCTCCGGGCCCCCGATTCCCAGGGCCCCCACCTATCTGTGCAACGAGTAGTAGCGATCTTCCAGCGCGCAACGTGAGGCGATGTTTCTCCGTGATTTCGCCGGCCTGCAACTGCGAGATCGCGAGTATAACGATCAGCCGATCGATCTCATCTGCCGACTGCCATGCTGATGCCACACGCAAGCGCAGCATATCAGCCTTATCTTGGTTGATCGGCATGCTGGACGAGCACATCTGTTGTCGCATCAACTGCTGACTGCTATATATGTGCTGGTGCTGAATCGATCGATTGTCGTCGCGGAAGTGAAGAACAACCACGGCACTGCTGCCTGCTGGGCTCTAGCCGCCATCAGTAAGTACGCTATACTGCCTATCTAGATCTAGATCGAGATTACATAGTGGAATTATCTGTTTATAACAAAATTACAAGGTATCAATTGATAATTTAAGGTTATAACCGTACAAACTTC
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| CDS seq | GGGACTCCGCTGCATCAAGGCCAACTGCTCCGAACTGATCAATTTCTGGTGCAGACAGGTGCTTGCGGTCAGGTTAAAGAAGTTGGCAAAAATGCTTCTGAAGAAAGGTTAATTGTTGTTTCATCTCAGGAGATTCCAGATGATCCAGTGTCTCCAACAATTGAGGCGCTTATTTTGCTCCATAGTAAAGCAAGTACACTTGCTGAGAACCACCAGTTGACAACACGGCTTGTTGTACCATCAAACAAAGTTGGTTGTATTCTTGGGGAAGGTGGAAAGGTAATTACTGAAATGAGAAGACGGACTGGGGCTGAAATCCGAGTCTACTCAAAAGCAGATAAACCTAAGTACCTGTCTTTTGATGAGGAGCTTGTGCAGGTTGCTGGGCTTCCAGCTATTGAAAGAGGAGCCCTGACAGAGATTGCTTCGAGGCTTTGA
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| Protein seq | GTPLHQGQLLRTDQFLVQTGACGQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEALILLHSKASTLAENHQLTTRLVVPSNKVGCILGEGGKVITEMRRRTGAEIRVYSKADKPKYLSFDEELVQVAGLPAIERGALTEIASRL |
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| Function | KH domain-containing protein HEN4 [UniProtKB/Swiss-Prot:F4KDN0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0497500 | OsNip_10t0497500-01 | Chr10 | 18955115 | 18957024 | + | RAP2018-11-26 | ||
| CDS seq | GGGACTCCGCTGCATCAAGGCCAACTGCTCCGAACTGATCAATTTCTGGTGCAGACAGGTGCTTGCGGTCAGGTTAAAGAAGTTGGCAAAAATGCTTCTGAAGAAAGGTTAATTGTTGTTTCATCTCAGGAGATTCCAGATGATCCAGTGTCTCCAACAATTGAGGCGCTTATTTTGCTCCATAGTAAAGCAAGTACACTTGCTGAGAACCACCAGTTGACAACACGGCTTGTTGTACCATCAAACAAAGTTGGTTGTATTCTTGGGGAAGGTGGAAAGGTAATTACTGAAATGAGAAGACGGACTGGGGCTGAAATCCGAGTCTACTCAAAAGCAGATAAACCTAAGTACCTGTCTTTTGATGAGGAGCTTGTGCAGGTTGCTGGGCTTCCAGCTATTGAAAGAGGAGCCCTGACAGAGATTGCTTCGAGGCTTTGA
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| Protein seq | GTPLHQGQLLRTDQFLVQTGACGQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEALILLHSKASTLAENHQLTTRLVVPSNKVGCILGEGGKVITEMRRRTGAEIRVYSKADKPKYLSFDEELVQVAGLPAIERGALTEIASRL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.556288 | 0.728365 | 1.518915 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0495000 | RBH | 5.097850 | 3.030061 | 7.637742 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35220 | SBH | 3.408226 | 2.150167 | 2.052179 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0497500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015860 | SBH | 1.409576 | 18.736385 | 15.977048 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0016330 | SBH | 0.000000 | 0.0 | 1.718276 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015490 | SBH | 2.518473 | 14.325974 | 19.163500 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0016240 | SBH | 0.000000 | 0.173461 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015780 | SBH | 12.807811 | 20.404175 | 42.451694 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0311200 | SBH | 7.128402 | 24.151474 | 36.1937875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015940 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0334100 | SBH | 13.6633335 | 58.396965 | 39.6629235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015710 | SBH | 0.397179 | 0.371587 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015590 | SBH | 0.516287 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016100 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015540 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0016030 | SBH | 1.062568 | 9.425070 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015650 | SBH | 0.639087 | 3.830680 | 4.139690 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0016030 | SBH | 0.000000 | 18.752398 | 2.913975 |
