Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0493600 | OGI:10058440 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:18733290-18741383 | ||||||||
| Gene Symbol | alphaGa1, alpha-Gal I | ||||||||||
| DNA seq | ACTTCTCCCTCCGAATTTAACGCGGAGCGAAGCTCAGAGCAGAGCACGCCGGCCATGGCGCGCGCCTCGAGCTCCTCGTCTCCGCCGTCGCCGCGCCTCCTCCTCCTCCTCCTGGTGGCGGTGGCGGCGACGCTGCTCCCCGAGGCGGCGGCGCTGGGCAACTTCACGGCGGAGTCCCGCGGCGCGCGGTGGCGGTCTCGCCGCGCGCGGCGCCGCGCCTTCGAGAACGGCCTCGGCCGCACGCCGCAGATGGGGTACCGTCTCTCTCTCCCTCTCTCTTTATTTTTCTCATTCGCAACTCGTGACCGCTTATACTGTATAAATTTTGGTACATTTTTCTTTTGTGTTACCAAATTTTGGCAGACTTTTAGATATGTTCAGTTTGAAACGTTCCAAAATTTTGGTGATGGTGTTTATGCGAGATGAAACTCTGGGAGCTTCAAAATTTTGGTAGAGTAATAACACGTTTAGTGAACAGCAAGCAACCGATTATCACAATGGAAAATAAAAAAGAAACAGTAATCGCGTCATCTTCTAGTCGGATTTTTTTTGGGGGAGGAAACGGACATGTCTCTAGCTTGCAGTGGAAGCGAAAGCTTCTTCTGCTCTTCTCTGCAGTTTCTGAACTCTGAAACTCTGAACTTTAAGCTGCTTTTGTTTGTTCCTTTCTTCGATGCTTTCCTGCACGGCAAAAAAACTGACATCACACGCATGTGGAGTACTACGCTTCCGTTTTCCATTTTTTTTTATCCTTTGTTTTTGTGCTCAATTTTGCGTTTGTTTATCGTGTTCGGCGATAGATTTTCTCTCTGTTTTTTTTATTCTGTCGATTTGAGACGTCAGAAGAGTAGCTCGCGCGCACGCGGACGCGGTGGGTGCATTTCTTTTTTCTCCGTTTGTCCAAAAGATTTCTGTTCTTTTCTGCATGGGAAAGAAGAAAGAAAAACTGGTGCTACTGTACAATGGACTATTGCCATGTTGGAGACCAATGTTGCTTTCTGTACGAGCAAATGTTTCGTCAGGTACAGGGCACTGTGTGAATTTTTTTTCACCCGGAAAAGTGGAAAACTTTCCTGAATTCAATGGAAAGCTTAAGAGTTCTGTCATTTGGGTTTTTTTTTTGTACATTTAGGTTCTGTCAGACTGTATAAAAGAAAAAAAAATCAGACAATCCTGTTCTCTGTCAGGCTGCAAGAACATCCACAAGGTTAACCATCATCAGATTATCACTTTGAGAAAAATTGTAGTAAGGTTTAGACTCCACTGCATAAAAAATCTTCAGACAAGGGACAACCGAGAGAAAGCGAGCATGTCCACCAAAAACAGGCATAAAAATTTCCTGCTTTTCATTTGGCTTCTGCTTCTTTTGACGGGCATATCTATGCTCTTTTCTTTTCTTTTCTTTTGCTTGTCCCTTTTAGCCTCTTTTCTTGTGCTGACATATTCAACTATGCTGCCTCTATTAAATTCTGTCACAATTGAACTGGTTTTACCGTACATGTACTTCCATTTCATTGTTCTTTACGCATCAGGCAGAATTTCCGCACTTTCTTTTACCACCTACTCATTCCCTCCAAAAAAGACAAATCTGGGTTTTCGTGTCCAACGTTTGACTGTCTATCTTATATATTTTTTTATAATTAATATTTTTATTGCTGTTAGATGATAAAACATGATTAATACTTTATGCATGACTTATCTTTTTAATTTTTTTATAATTTTTTCAAATAAGACGGACGGTCAAACGTTGGGCACGGAAATCCAGGGTTTGTCTTTTTTTTGGGATGGACGGAGTACTCCCTCCGTCCCTCCGTCCCACTTCGTCCTCGTCCAAATTCGTATTATTAGGATGTGTCATATCCTCTAACATATTAGAGAGTACTTCATATGTTCCAAAATATCAAAGTATTTTTATATTATTTAGCAAATATTGAAATTAACAAAAACAACTTTGATGTCCTTCATTAAGCGAGGGATGATTAGGGATGTGAGGACATTTTAGTAGAAAGAATTTCGAATGGGAGATAATCCATACAGCAAGTAGTACTCTAAATTATGCTAGAAATGCTTATATTTTTAACCAGAGGGAGTTCTTTAGAGTTCAGACTTCATAATATGTCGGTGTTGTAAACAATACTGCTAGTCTTTCAGATTCACGTGTGTAGGCATTAGCAGACAGTGGTACAAATGCATCAATGGTCGTGGTTTTGTCAAGTAATAAATTAATTAACAACTGCTGTGCGACTGACGCTGTCTCTCGGTGTGTGTGGCTGTGTTAGGTGGAATAGCTGGAACCACTTCTACTGCGGGATCAACGAGCAGATCATCAGGGAAACAGGTACACTTGCTTCTGCCACTAGTGCTCTCTTCTCAACTCAACTTATTTCTGCAACCCATGGCGTCACACTTTGATCTCTCCAGTACGCCACGTACCGTGTTTTGGTATTTTTCTCTATACACATTGCATTGGTTCCCAATGGACACGGATCCTCTACAGTATTGCTGTTGTTGACATGTATACCTAGTCATATATATCAATGACATCTGCAGCAGGTGTAGTACTGCAAACAATCCCCGTCGGTTTCCAATGTGCATCAGCACATCAGGAACCGAAAACTTGCAACCTCGTCAGAAATCTTTCCAATGAAGCTTAGATTATTTTTCTAGGAGATGACTTAATACGTTGATTTAGTAGTTTTTAGTTGGGAGGACACTGTTTTTGAAGTTCTTTTTTTTTTCAAGAAGTTTAGTAGTTCTAAACTATGCACTAATTTGGAACATCTTGGAAGCACAACACATAGTGGTGGGGTTCGGCGTAGTGTGGTGGGTGTGGTGTGTTTGGATGCATCAACGTCAGCAACAGCAGGCTACAAAAAACATTCAGAGAAAAAAAAAAGGTTGCCGTCGGTGATGCGACTTATCTGAAATTCCCCACGTACTTTTGTCATACCCTGCATCAAAACTTCCAAGAAATAATAAAAAAAAGGATCATTCATCACAGGCTATGATTAAAGCAAGTTAACAAATGACACGTCATTTGCTACTAATCTAGTAGCCGACCTATACAATAGTTAGATACATACAGATACATACTAACACCTCATAAGGCTTATTAAAGCTTGTGTTGCAACAGGTTACCGATCTGTAGCCCGTCTTTTTTCAAGTCTTGTCTCTTTTCTCTAAGAACACAGCTTAAATCTTGGTAACTCCGATGGCTATCACTTCATTATACTTGCTCTTACAAGTTGGTAGTGTAATAAGAGTTGGGTAAAAGTAAACAGCCATGAATTGGGGCGGTGAGATCTCGAGTCACCCGAGAGACAACAATGCATCTGTTTTGGTATAGCTGCGAGCTGTACGGCCGCAGGGCGAGACCCTTGTCGGCCGGCACGGATTACTACAGCTAGGATTAACTGCAGGGATGAGCTTGAGCTTGCAGATTTACAGCTTGCAAGCAGCAGGTTTTGCATGGACCCAAGCTAGTACTAGCAATGCAAAGGACAGCGACCAGATTGGCTGCACCTGCACACTGCACACACACACTGCCATGCTCTCTATCTCTCCTGACCAAATCTTTATTCTTTGGGCACCAGACGAATCAGATCTGGTTCAGAGATGCCCTGCCCCTTTTAACTCTTCCACCATGCAACTTGCCTGGACGACTGAATTTTTAGTCGGCAATGTTCAGTAATCAGTCACGGCTTGCTTGCTTGCTTGGCCGATTTGTTTGTTGCTCCAGCATGCTAGGATTGCTTAAGAGTTTCAGGCAGAGCAGCTTCATGTGCTAGTGCAGTGTGATTAGGAGCTTTTTGCAGATTGCAGTAGATAGCATCCTCCCTTGGTTATCCAATCAATGGCTTTTTAGTGGATGGAAAGAGCAAAAGATTCCATGCATGGAGTAGATAGCTTTTGTTTTGTTTTGTTTAGAGGAGCAAGGCCACATGTGTTGCAAAACATTGTGGCAGAAATATGGAAATGAAAGGGAGAGTGAGAGGGTCCATGTTGAATAAGACCCTTTGGCCAGAATGTTCATAGGAGCTTTAATTACCATGTTGATAACGGATGATGAGGCCCCATAACCAAGCAATGCTGATCTCCAGAATGGGTGAAGACATTTTCACTGATTCTGATCTGCACAACTGGATTATGTTGAATTAAATCATTCATGTCGACAGCTTGTGGAGGGCAGATCTCTGAACAAATCTAGAGTAAATGTCTTAGATCAGATTTTTATGACTGAGTACACATTAATCATCTCATCAGTCATCCAGTCAATCTTGGTGGTCCAAACAAAATCAATTGACAATATTGTCACCACAGTCTAGTACTACTACAAAGTATGTGGTTGGTAATAGATGAAAGGAAGTCCATGGAAATGGGGCCCTACAAGCTTGGGGTCAGCCATGGATTGGTACTGCCTAACTACCAAACTCTAAATAAGAGGATGGCAGCTGCAGCCTGCAGGCAGGCATGAAACCTGCTCCACTTGGACTCACTCCATTTACATGTAACCATAGTTAGTACTAGAACCACTCTCTAGCTACTTGTATAGTTGTATGTTCCAGCTTCCTAGTAGGTGGTTATGGACAAACACCCGTGATGATCTTAGTGTCTTATCAGAATAATCATGGTACTGATTTGGTCTGGTATCAAATTTCTGTTACAAACATTGTTCCTTAATATTGTCAATATTATGCACATAGTGTTTTTTTTTTGCTGGGCCGGCCAAAGGAAGAGGCTGATCAAATATCATTAAGATTTGAAGGAGAATTTGCAAAGTTACAAGCATCGACAGGGAAGCCTGTCGAACCAGACGCCTTTTGAGATTTTTTGTACTACAGATTTAATAGAAGCTGTTTTTAATAATGTTGTGAGCAACTGAGAGTTAAGGCTGATGTAATTGTGTTCCTTTCTTCAGCTGATGCATTGGTCAACACTGGTCTGGCGAAATTGGGGTACCAGTATGTGAATATAGGTATGGGCTTTTATCTGATAGAAACTATGAACAGTATTTCATATGATACACTAGAGTATGGACACAAACATTGTTGATATATTAGCAAAAGTTAATTCAATTATTTTGTGATAGAACAGCTAGTAACTCATGTCTGTAATGTTTTCCATCTCTTCTTTCAGATGATTGCTGGGCAGAATATAGTAGGGATTCCCAGGTAAAGAGACAAAAATATTCTCCATAAAGCAATGCTATCCACCGCCATAATTTTCAGCACAATTTTAGGATACAAATTTGAGAACCTTGTCTAGTTTGTTGATGAGCCTGAGAAATTTTAGACTGGAAACAATCATTAACAATTACAATACACATTAATAAGAAAACGTATGTACTTTCTATCAGTTTAATGTGTCATAACTAGAAATTTTATATGTGAAAAATTCTGCATGGGGGGAGAATGAGCAATTTTAAAAGATCAATGCTTTAAAATTGTGTAGACCAAGCTATTGCTGTCAGTTTTGACAAGTTGTACTGCTCTTTTTTTCGCTTCTCAGGGTAACTTTGTGCCAAATAGGCAGACGTTCCCCTCTGGTATCAAGGCACTGGCAGATTATGTGCATGCAAAAGGGCTGAAGCTTGGCATCTACAGCGATGCCGGGTATGCTAGCTTTCAGATTTATCATAATGACAAACTACTTTGTACTCATCCAGAAGTAACTTATGTCATCATTAGCCTAGATGAACTAAGAATTTTATCGAATATAAACTATCAACAAATCTGAAACTAATAGCAAGACTGTATTTCAGGTCACAAACATGCAGTAACAAAATGCCAGGATCACTTGATCATGAAGAGCAAGATGTCAAGACCTTCGCGTCTTGGGTAAACCTCGACTCTTTTACCTGTCTGGTTATACCCAATCAACATTAAACACTGAAACTATTATTCTGGTGTTCTTAATTCTTGACCTCTATGTTCCAGGGAGTTGATTATCTGAAGTATGACAACTGCAATGATGCTGGCAGGAGTGTCATGGAAAGGTAAGGAGACAAAACATCTCAAACTGTCAGCTTTATGCATCAGATTGCTGATGAGCAACTGTTTTCATGTTTAATGCAGATACACTAGAATGAGCAATGCCATGAAGACCTATGGAAAGAATATCTTCTTCTCACTCTGTGAATGGTGAGTTTACTCTCTGTAACATTTAGGGCTAGGTCGAAGGAACATGAAGCATTGCTGATTCACTCCACTGTGTTTTTTTTTCTGTATAGGGGGAAAGAAAATCCTGCTACATGGGCAGGCCGCATGGGTAACAGCTGGAGAACAACTGGCGACATCGCCGACAACTGGGGCAGGTTCTACTCATCCTCTCTTTAACCCTGTTTACATAGTTCTTGAGTTTTTCAGTACTGATCGTAATTGCCCTGTTATTTCAGTATGACATCTCGTGCAGACGAAAATGACCAATGGGCTGCCTATGCTGGACCTGGTGGATGGAATGGTAAGAACTTGAGATGTATCTGTTCCTAGGTTGCTTAACCATTTGAGAGCTTCAAAATGATCAACATATGTTTCTGCTGTGCAATATCAGATCCTGACATGCTTGAAGTGGGAAATGGTGGGATGTCTGAAGCTGAGTACCGGTCACACTTCAGTATCTGGGCACTAGCAAAGGTACCATAGCATGTTCTATGTACTAATAATTTTGCTGCAATGTTGAACTTCTTTGCATTTCCTCACTGCAAGTTTTGCTTGAATTGTTCAGGCTCCTCTTTTGATCGGATGCGATGTGCGCTCAATGAGCCAGCAGACGAAGAACATACTCAGCAACTCGGAGGTGATCGCTGTCAACCAAGGCAAGCCTTCTCAGTTTCACATGCTTAGATTTAGCCATACCTCTTGGATATTTCACCATACTCATAATGTAACTCTCTGAACAGATAGTCTAGGTGTCCAAGGAAAGAAAGTACAATCTGACAACGGATTGGAGGTATGCCTTCAATGGCTTCCAAATTTGCAGTTTCTCATTGTCCCATAAGCCTTGGCATGATCATGACTAACTCTGAAGCTGACAATACTTTGTGTAAATTTGTCGGTAGGTTTGGGCCGGGCCACTCAGCAACAACAGGAAGGCTGTGGTGCTCTGGAACAGGCAGTCATACCAGGCAACCATCACTGCACATTGGTCGAACATCGGGCTCGCTGGATCGGTCGCGGTCACTGCTCGTGATCTATGGGCGGTAAAGCCTTTGCTTTCTTCAGAGCTCAAAGTAGAACATCTTCTCTTCAGAATTCAGAGTTCATAACAAATTTCTGTCAATTGTGCAGCACTCTTCGTTCGCGGCTCAGGGACAGATATCAGCATCGGTGGCGCCTCATGACTGCAAGATGTATGTCTTGACACCAAACTAGTCAGCAAAGAAAAGCAGCACAGGTTAGTACGTGTCCGGCGAATACAGCTAAATTGATCAGGATTCAGGAAGAAGGTTTGCAATTTGCAAGGATTGGTAGAGCTGGAAATGGGATGCCATTTGGTTATGTATGTAGAAATAAGCTGTAAGCCTGTAAGCGTATATGTAATCAGCCGTCAAATGCTGGCGAGTGTATTTCTGAAGTTTGCAACGAAAGTTGCAGCAATAAAAATACAAAAAGAAGGCTTTCCTGCCACTATATAAGATATGAACATATGAATTTTTTGCATCGCCTGAAGACCTGATTATACGGCTAAACACTTGAGACACGGCAACTGCAGGATATCAAAATGAGACGACATCACCAACGGCCAACATCCTCAAGCAACACCGCCTCACCAACGGCCCCGTCGAGCTCCAGATGGACCCCATCACCACCTCCGATGACCACGACGACGACGACGAGCTCATCATCGATAGGAGGGGCTGGATGAACTGGAGGACGCCGGAGAAGAGGGCGAAGAGGATGCTCGAGGAGGAACAGGAGGAGCTGGAGGACGAAGCCAGATGGAGGAATAAGCTTAAGGAGGAAGCTTAATTAATTATGTGGCTTAGTAATTTGCAAGTTTCTTTGTGATCCAGCTATCCTATACTCCCTCCATCTCAAAAAAAAAAAAACAACCTAATAAGATGGGACATAATCTATATCCTATCCTATTCTGACT
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| CDS seq | ATGGCGCGCGCCTCGAGCTCCTCGTCTCCGCCGTCGCCGCGCCTCCTCCTCCTCCTCCTGGTGGCGGTGGCGGCGACGCTGCTCCCCGAGGCGGCGGCGCTGGGCAACTTCACGGCGGAGTCCCGCGGCGCGCGGTGGCGGTCTCGCCGCGCGCGGCGCCGCGCCTTCGAGAACGGCCTCGGCCGCACGCCGCAGATGGGGTGGAATAGCTGGAACCACTTCTACTGCGGGATCAACGAGCAGATCATCAGGGAAACAGCTGATGCATTGGTCAACACTGGTCTGGCGAAATTGGGGTACCAGTATGTGAATATAGATGATTGCTGGGCAGAATATAGTAGGGATTCCCAGGGTAACTTTGTGCCAAATAGGCAGACGTTCCCCTCTGGTATCAAGGCACTGGCAGATTATGTGCATGCAAAAGGGCTGAAGCTTGGCATCTACAGCGATGCCGGGTCACAAACATGCAGTAACAAAATGCCAGGATCACTTGATCATGAAGAGCAAGATGTCAAGACCTTCGCGTCTTGGGGAGTTGATTATCTGAAGTATGACAACTGCAATGATGCTGGCAGGAGTGTCATGGAAAGATACACTAGAATGAGCAATGCCATGAAGACCTATGGAAAGAATATCTTCTTCTCACTCTGTGAATGGGGGAAAGAAAATCCTGCTACATGGGCAGGCCGCATGGGTAACAGCTGGAGAACAACTGGCGACATCGCCGACAACTGGGGCAGTATGACATCTCGTGCAGACGAAAATGACCAATGGGCTGCCTATGCTGGACCTGGTGGATGGAATGATCCTGACATGCTTGAAGTGGGAAATGGTGGGATGTCTGAAGCTGAGTACCGGTCACACTTCAGTATCTGGGCACTAGCAAAGGCTCCTCTTTTGATCGGATGCGATGTGCGCTCAATGAGCCAGCAGACGAAGAACATACTCAGCAACTCGGAGGTGATCGCTGTCAACCAAGATAGTCTAGGTGTCCAAGGAAAGAAAGTACAATCTGACAACGGATTGGAGGTTTGGGCCGGGCCACTCAGCAACAACAGGAAGGCTGTGGTGCTCTGGAACAGGCAGTCATACCAGGCAACCATCACTGCACATTGGTCGAACATCGGGCTCGCTGGATCGGTCGCGGTCACTGCTCGTGATCTATGGGCGCACTCTTCGTTCGCGGCTCAGGGACAGATATCAGCATCGGTGGCGCCTCATGACTGCAAGATGTATGTCTTGACACCAAACTAG
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| Protein seq | MARASSSSSPPSPRLLLLLLVAVAATLLPEAAALGNFTAESRGARWRSRRARRRAFENGLGRTPQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFASWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSWRTTGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALAKAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKVQSDNGLEVWAGPLSNNRKAVVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHSSFAAQGQISASVAPHDCKMYVLTPN |
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| Function | Alpha-galactosidase [UniProtKB/Swiss-Prot:Q9FXT4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0493600 | OsNip_10t0493600-01 | Chr10 | 18733290 | 18740913 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGCGCGCCTCGAGCTCCTCGTCTCCGCCGTCGCCGCGCCTCCTCCTCCTCCTCCTGGTGGCGGTGGCGGCGACGCTGCTCCCCGAGGCGGCGGCGCTGGGCAACTTCACGGCGGAGTCCCGCGGCGCGCGGTGGCGGTCTCGCCGCGCGCGGCGCCGCGCCTTCGAGAACGGCCTCGGCCGCACGCCGCAGATGGGGTGGAATAGCTGGAACCACTTCTACTGCGGGATCAACGAGCAGATCATCAGGGAAACAGCTGATGCATTGGTCAACACTGGTCTGGCGAAATTGGGGTACCAGTATGTGAATATAGATGATTGCTGGGCAGAATATAGTAGGGATTCCCAGGGTAACTTTGTGCCAAATAGGCAGACGTTCCCCTCTGGTATCAAGGCACTGGCAGATTATGTGCATGCAAAAGGGCTGAAGCTTGGCATCTACAGCGATGCCGGGTCACAAACATGCAGTAACAAAATGCCAGGATCACTTGATCATGAAGAGCAAGATGTCAAGACCTTCGCGTCTTGGGGAGTTGATTATCTGAAGTATGACAACTGCAATGATGCTGGCAGGAGTGTCATGGAAAGATACACTAGAATGAGCAATGCCATGAAGACCTATGGAAAGAATATCTTCTTCTCACTCTGTGAATGGGGGAAAGAAAATCCTGCTACATGGGCAGGCCGCATGGGTAACAGCTGGAGAACAACTGGCGACATCGCCGACAACTGGGGCAGTATGACATCTCGTGCAGACGAAAATGACCAATGGGCTGCCTATGCTGGACCTGGTGGATGGAATGATCCTGACATGCTTGAAGTGGGAAATGGTGGGATGTCTGAAGCTGAGTACCGGTCACACTTCAGTATCTGGGCACTAGCAAAGGCTCCTCTTTTGATCGGATGCGATGTGCGCTCAATGAGCCAGCAGACGAAGAACATACTCAGCAACTCGGAGGTGATCGCTGTCAACCAAGATAGTCTAGGTGTCCAAGGAAAGAAAGTACAATCTGACAACGGATTGGAGGTTTGGGCCGGGCCACTCAGCAACAACAGGAAGGCTGTGGTGCTCTGGAACAGGCAGTCATACCAGGCAACCATCACTGCACATTGGTCGAACATCGGGCTCGCTGGATCGGTCGCGGTCACTGCTCGTGATCTATGGGCGCACTCTTCGTTCGCGGCTCAGGGACAGATATCAGCATCGGTGGCGCCTCATGACTGCAAGATGTATGTCTTGACACCAAACTAG
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| Protein seq | MARASSSSSPPSPRLLLLLLVAVAATLLPEAAALGNFTAESRGARWRSRRARRRAFENGLGRTPQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFASWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSWRTTGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALAKAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKVQSDNGLEVWAGPLSNNRKAVVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHSSFAAQGQISASVAPHDCKMYVLTPN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0493600 | OsNip_10t0493600-02 | Chr10 | 18733364 | 18741383 | + | RAP2018-11-26 | ||
| CDS seq | TCGTCTCCGCCGTCGCCGCGCCTCCTCCTCCTCCTCCTGGTGGCGGTGGCGGCGACGCTGCTCCCCGAGGCGGCGGCGCTGGGCAACTTCACGGCGGAGTCCCGCGGCGCGCGGTGGCGGTCTCGCCGCGCGCGGCGCCGCGCCTTCGAGAACGGCCTCGGCCGCACGCCGCAGATGGGGTGGAATAGCTGGAACCACTTCTACTGCGGGATCAACGAGCAGATCATCAGGGAAACAGCTGATGCATTGGTCAACACTGGTCTGGCGAAATTGGGGTACCAGTATGTGAATATAGATGATTGCTGGGCAGAATATAGTAGGGATTCCCAGGGTAACTTTGTGCCAAATAGGCAGACGTTCCCCTCTGGTATCAAGGCACTGGCAGATTATGTGCATGCAAAAGGGCTGAAGCTTGGCATCTACAGCGATGCCGGGTCACAAACATGCAGTAACAAAATGCCAGGATCACTTGATCATGAAGAGCAAGATGTCAAGACCTTCGCGTCTTGGGGAGTTGATTATCTGAAGTATGACAACTGCAATGATGCTGGCAGGAGTGTCATGGAAAGATACACTAGAATGAGCAATGCCATGAAGACCTATGGAAAGAATATCTTCTTCTCACTCTGTGAATGGGGGAAAGAAAATCCTGCTACATGGGCAGGCCGCATGGGTAACAGCTGGAGAACAACTGGCGACATCGCCGACAACTGGGGCAGTATGACATCTCGTGCAGACGAAAATGACCAATGGGCTGCCTATGCTGGACCTGGTGGATGGAATGATCCTGACATGCTTGAAGTGGGAAATGGTGGGATGTCTGAAGCTGAGTACCGGTCACACTTCAGTATCTGGGCACTAGCAAAGGCTCCTCTTTTGATCGGATGCGATGTGCGCTCAATGAGCCAGCAGACGAAGAACATACTCAGCAACTCGGAGGTGATCGCTGTCAACCAAGATAGTCTAGGTGTCCAAGGAAAGAAAGTACAATCTGACAACGGATTGGAGGTTTGGGCCGGGCCACTCAGCAACAACAGGAAGGCTGTGGTGCTCTGGAACAGGCAGTCATACCAGGCAACCATCACTGCACATTGGTCGAACATCGGGCTCGCTGGATCGGTCGCGGTCACTGCTCGTGATCTATGGGCGCACTCTTCGTTCGCGGCTCAGGGACAGATATCAGCATCGGTGGCGCCTCATGACTGCAAGATGTATGTCTTGACACCAAACTAG
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| Protein seq | SSPPSPRLLLLLLVAVAATLLPEAAALGNFTAESRGARWRSRRARRRAFENGLGRTPQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFASWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSWRTTGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALAKAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKVQSDNGLEVWAGPLSNNRKAVVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHSSFAAQGQISASVAPHDCKMYVLTPN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0493600 | OsNip_10t0493600-03 | Chr10 | 18733486 | 18740916 | + | RAP2018-11-26 | ||
| CDS seq | CGCCGCGCGCGGCGCCGCGCCTTCGAGAACGGCCTCGGCCGCACGCCGCAGATGGGGTGGAATAGCTGGAACCACTTCTACTGCGGGATCAACGAGCAGATCATCAGGGAAACAGCTGATGCATTGGTCAACACTGGTCTGGCGAAATTGGGGTACCAGTATGTGAATATAGATGATTGCTGGGCAGAATATAGTAGGGATTCCCAGGGTAACTTTGTGCCAAATAGGCAGACGTTCCCCTCTGGTATCAAGGCACTGGCAGATTATGTGCATGCAAAAGGGCTGAAGCTTGGCATCTACAGCGATGCCGGGTCACAAACATGCAGTAACAAAATGCCAGGATCACTTGATCATGAAGAGCAAGATGTCAAGACCTTCGCGTCTTGGGGAGTTGATTATCTGAAGTATGACAACTGCAATGATGCTGGCAGGAGTGTCATGGAAAGATACACTAGAATGAGCAATGCCATGAAGACCTATGGAAAGAATATCTTCTTCTCACTCTGTGAATGGGGGAAAGAAAATCCTGCTACATGGGCAGGCCGCATGGGTAACAGCTGGAGAACAACTGGCGACATCGCCGACAACTGGGGCAGTATGACATCTCGTGCAGACGAAAATGACCAATGGGCTGCCTATGCTGGACCTGGTGGATGGAATGATCCTGACATGCTTGAAGTGGGAAATGGTGGGATGTCTGAAGCTGAGTACCGGTCACACTTCAGTATCTGGGCACTAGCAAAGGCTCCTCTTTTGATCGGATGCGATGTGCGCTCAATGAGCCAGCAGACGAAGAACATACTCAGCAACTCGGAGGTGATCGCTGTCAACCAAGATAGTCTAGGTGTCCAAGGAAAGAAAGTACAATCTGACAACGGATTGGAGGTTTGGGCCGGGCCACTCAGCAACAACAGGAAGGCTGTGGTGCTCTGGAACAGGCAGTCATACCAGGCAACCATCACTGCACATTGGTCGAACATCGGGCTCGCTGGATCGGTCGCGGTCACTGCTCGTGATCTATGGGCGCACTCTTCGTTCGCGGCTCAGGGACAGATATCAGCATCGGTGGCGCCTCATGACTGCAAGATGTATGTCTTGACACCAAACTAG
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| Protein seq | RRARRRAFENGLGRTPQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFASWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSWRTTGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALAKAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKVQSDNGLEVWAGPLSNNRKAVVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHSSFAAQGQISASVAPHDCKMYVLTPN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0493600 | OsNip_10t0493600-04 | Chr10 | 18739899 | 18740952 | + | RAP2018-11-26 | ||
| CDS seq | AGTATCTGGGCACTAGCAAAGGCTCCTCTTTTGATCGGATGCGATGTGCGCTCAATGAGCCAGCAGACGAAGAACATACTCAGCAACTCGGAGGTGATCGCTGTCAACCAAGATAGTCTAGGTGTCCAAGGAAAGAAAGTACAATCTGACAACGGATTGGAGGTTTGGGCCGGGCCACTCAGCAACAACAGGAAGGCTGTGGTGCTCTGGAACAGGCAGTCATACCAGGCAACCATCACTGCACATTGGTCGAACATCGGGCTCGCTGGATCGGTCGCGGTCACTGCTCGTGATCTATGGGCGCACTCTTCGTTCGCGGCTCAGGGACAGATATCAGCATCGGTGGCGCCTCATGACTGCAAGATGTATGTCTTGACACCAAACTAG
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| Protein seq | SIWALAKAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKVQSDNGLEVWAGPLSNNRKAVVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHSSFAAQGQISASVAPHDCKMYVLTPN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0493600 | OsNip_10t0493600-05 | Chr10 | 18737756 | 18740943 | + | IsoSeq | ||
| CDS seq | ATGGGATGCCATTTGGTTATGTATGTAGAAATAAGCTGTAAGCCTGTAAGCGTATATGTAATCAGCCGTCAAATGCTGGCGAGTGTATTTCTGAAGTTTGCAACGAAAGTTGCAGCAATAAAAATACAAAAAGAAGGCTTTCCTGCCACT |
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| Protein seq | MGCHLVMYVEISCKPVSVYVISRQMLASVFLKFATKVAAIKIQKEGFPAT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 11.097032 | 5.853734 | 22.955397 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35110 | RBH | 6.982018 | 3.589670 | 5.291086 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0493600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015710 | RBH | 5.747730 | 178.552719 | 20.450726 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015960 | RBH | 0.754305 | 62.921967 | 6.776486 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015350 | RBH | 14.910033 | 156.094742 | 38.561089 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015700 | RBH | 1.947563 | 2.636829 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0015630 | RBH | 25.050137 | 213.734451 | 30.872732 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0310000 | RBH | 92.739601 | 219.9359585 | 2.854783 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015600 | RBH | 4.662012 | 12.875584 | 3.728185 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0332800 | RBH | 89.8024555 | 178.8373335 | 16.9043325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015350 | RBH | 1.625279 | 2.239694 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015240 | RBH | 1.907791 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0015650 | RBH | 25.788677 | 291.746185 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015360 | RBH | 4.475768 | 0.0 | 2.106051 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015880 | RBH | 8.002461 | 144.203613 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015520 | RBH | 6.106542 | 31.515642 | 11.206709 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015590 | RBH | 34.080719 | 208.416809 | 23.096806 |
