Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0473950 | OGI:10055730 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:17611819-17613119 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGAAAATTTGGGGGGAATGAAAGGGGACAGAATGAGGAAGAAGCAGACCAAGAATTACCCGAGCAGAATCCGATCGACCGGCGGCCAGACCACCCTCCAATCTTTCCTCTTCAAATCCAGGTAGGGAAAGAAGCTACCTCGAATTCAGATTGTCCCCAATTTTTTTCCCCATCCTTTTCGCTTCTTACATTTGCCCTTGAATCCTTCAGCGTTGTCGATGAGGAAGTGAAGCCGATCTCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGCCATCTCGCCGCCGCAACCGCCGAAGCGGGAGATCATCCGAGTCACCACCAAGGCGATCGTCAAGGTAACCAATCGACCAAACCAATCCGATGCTTCCCCTTCCTTCGCGGTGTAACTCTGGAAATGCTTCGGGATCTGGCAGGAGAAGGCGAGCGCATTCTCGTCGGTGGGCTCCTCCTCCTCCTCGGGGAAGAGCGGCGCCGGCGGCGGCGCCCTCAACGCGGCGGCGCTGTTCAGGCGGTTCAACAGCTCAGCCCCCGTGCCGAGAGCGGAGGCCGCGGGAGACGGCGATGGCGGCGTCCGGCTGGAGATCGAGGACATCGCGGCGGGGGATCGCCGCCGCGAGACCAGGAAGCGGAAGAGCCCCCTCGGTGCGCGCCTCGCCTCTCGAATCCCATCTCCCCCTTTCAGGCTTTCACCACTCATCCGTGACGCGATGTCGATCTCCCTCGCAGGTGGTGGCGGCGGCGGCGACGACCACCACAGCGGCGGAAGCGGCAAGCGCGTGGTGGTGCTCGGCGACGACCCGAAGCCGAGGCCCGCGGCGAGGACGATGACGACGACGGCGACGACGAGAAGGCAGCGGCGGGGGCGGCGGCATGCGGGGCCCACCGGCCGCGGCGAGGAGGGCGGCGACCAAGCTGCGTACAACCACTGTAATCTCTCTCCCCTCTCTCGTTCGCTCTCTCGATTTTGTGACGGAAATTTGAACGGCGTGGTGGCTTGGTTTCAGACGCGAGCGGCGGCGGGTGGTGGCACGGCGAGATGGAGGGCGTCGACGGCGAGGAGGTGGGGTGGACCGACGACATGTGGGAGGGGATGGGGTCCATCACGCTCGGAGGCTTGGAGTGGCACTAGCAGCAGCCGCCGCCGCCGCCAGTCGCGAGCTCCGCCGGTCGCCGCGGCGGCGCAGCTCGCCGGTTTTGGGTTTCGGGTTTGGAAGGTGACATGCGTTGTTAGCCACGGCGAGCTGTGGGTCAGATTATGCTATGTCTAATGAGATTATTATATCATATGTTACTCCATTTGGC
More
|
||||||||||
| CDS seq | ATGAAAGGGGACAGAATGAGGAAGAAGCAGACCAAGAATTACCCGAGCAGAATCCGATCGACCGGCGGCCAGACCACCCTCCAATCTTTCCTCTTCAAATCCAGCGTTGTCGATGAGGAAGTGAAGCCGATCTCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGCCATCTCGCCGCCGCAACCGCCGAAGCGGGAGATCATCCGAGTCACCACCAAGGCGATCGTCAAGGAGAAGGCGAGCGCATTCTCGTCGGTGGGCTCCTCCTCCTCCTCGGGGAAGAGCGGCGCCGGCGGCGGCGCCCTCAACGCGGCGGCGCTGTTCAGGCGGTTCAACAGCTCAGCCCCCGTGCCGAGAGCGGAGGCCGCGGGAGACGGCGATGGCGGCGTCCGGCTGGAGATCGAGGACATCGCGGCGGGGGATCGCCGCCGCGAGACCAGGAAGCGGAAGAGCCCCCTCGCGGCGGAAGCGGCAAGCGCGTGGTGGTGCTCGGCGACGACCCGAAGCCGAGGCCCGCGGCGAGGACGATGA
More
|
||||||||||
| Protein seq | MKGDRMRKKQTKNYPSRIRSTGGQTTLQSFLFKSSVVDEEVKPISPPPEKEEEEAISPPQPPKREIIRVTTKAIVKEKASAFSSVGSSSSSGKSGAGGGALNAAALFRRFNSSAPVPRAEAAGDGDGGVRLEIEDIAAGDRRRETRKRKSPLAAEAASAWWCSATTRSRGPRRGR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0473950 | OsNip_10t0473950-00 | Chr10 | 17611827 | 17612997 | + | RAP2018-11-26 | ||
| CDS seq | ATGAAAGGGGACAGAATGAGGAAGAAGCAGACCAAGAATTACCCGAGCAGAATCCGATCGACCGGCGGCCAGACCACCCTCCAATCTTTCCTCTTCAAATCCAGCGTTGTCGATGAGGAAGTGAAGCCGATCTCGCCGCCGCCGGAGAAGGAGGAGGAGGAGGCCATCTCGCCGCCGCAACCGCCGAAGCGGGAGATCATCCGAGTCACCACCAAGGCGATCGTCAAGGAGAAGGCGAGCGCATTCTCGTCGGTGGGCTCCTCCTCCTCCTCGGGGAAGAGCGGCGCCGGCGGCGGCGCCCTCAACGCGGCGGCGCTGTTCAGGCGGTTCAACAGCTCAGCCCCCGTGCCGAGAGCGGAGGCCGCGGGAGACGGCGATGGCGGCGTCCGGCTGGAGATCGAGGACATCGCGGCGGGGGATCGCCGCCGCGAGACCAGGAAGCGGAAGAGCCCCCTCGCGGCGGAAGCGGCAAGCGCGTGGTGGTGCTCGGCGACGACCCGAAGCCGAGGCCCGCGGCGAGGACGATGA
More
|
|||||||
| Protein seq | MKGDRMRKKQTKNYPSRIRSTGGQTTLQSFLFKSSVVDEEVKPISPPPEKEEEEAISPPQPPKREIIRVTTKAIVKEKASAFSSVGSSSSSGKSGAGGGALNAAALFRRFNSSAPVPRAEAAGDGDGGVRLEIEDIAAGDRRRETRKRKSPLAAEAASAWWCSATTRSRGPRRGR |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0473950 | OsNip_10t0473950-01 | Chr10 | 17611819 | 17613119 | + | IsoSeq | ||
| CDS seq | ATGCGGGGCCCACCGGCCGCGGCGAGGAGGGCGGCGACCAAGCTGCGTACAACCACTACGCGAGCGGCGGCGGGTGGTGGCACGGCGAGATGGAGGGCGTCGACGGCGAGGAGGTGGGGTGGACCGACGACATGTGGGAGGGGATGGGGTCCATCACGCTCGGAGGCTTGGAGTGGCACTAGCAGCAGCCGCCGCCGCCGCCAGTCGCGAGCTCCGCCGGTCGCCGCGGCGGCGCAGCTCGCCGGTTTTGGGTTTCGGGTTTGGAAGGTGACATGCGTTGTTAGCCACGGCGAGCTGTGGGTCAGATTATGCTAT
More
|
|||||||
| Protein seq | MRGPPAAARRAATKLRTTTTRAAAGGGTARWRASTARRWGGPTTCGRGWGPSRSEAWSGTSSSRRRRQSRAPPVAAAAQLAGFGFRVWKVTCVVSHGELWVRLCY |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr10 | 17612459 | 17612575 | + | OsNip_10t0473950-01 | OsNip_10t0473950-00,OsNip_10t0473950-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g33440 | RBH | 0.027698 | 0.095354 | 0.051625 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0473950 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0014320 | RBH | 0.016392 | 7.780792 | 0.498069 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0014520 | RBH | 0.0 | 6.621981 | 0.176852 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0014010 | RBH | 0.000000 | 3.447922 | 0.231462 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0014360 | RBH | 0.0 | 0.092615 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0014240 | RBH | 0.0 | 6.965169 | 0.691776 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0292600 | RBH | 0.487741 | 16.956152 | 0.4608595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0014220 | RBH | 0.0 | 0.186694 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0013940 | RBH | 0.0 | 0.122453 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0013820 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0014240 | RBH | 0.0 | 7.587008 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0013950 | RBH | 0.0 | 0.0 | 0.026202 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0014490 | RBH | 0.0 | 3.632129 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G014180 | RBH | 0.106191 | 1.516545 | 0.123844 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0014130 | RBH | 0.124411 | 15.207478 | 0.410950 |
