Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0468800 | OGI:10040130 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:17319498-17321082 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATACAAAGGAAACATGCCAATTACAGAACAACAGAAAGCTAAATATACTTCTTCATCATAAGGTAACATTACGGAAACACAGCTGCACAGATGCTAAGCCGTATTTCCTCTAGAAAGAAATTGATTAATATAGGACACCTTCTGCGTAACCTTACACTGTATGGCATCAACAAAGCAGATAATGACATACCTTAAGGTCTCGATGGAAAAGAACATTCCAAACCACAGACAAAGCCCGGAAACCACTCCAGACATCACAAAGTAGGATAGATATTGGTCCTCGCATGTTCTACAATATCTCTCTTCAGATGCAAGTGAAGAATTTGTGCACGAAATGTTCAACGGAAAACCACATAGCCTAGGATTTTTGTTGTATATCGATGGGTCAGTAAGGGTTTGAAGTTGATTCCCAAAGGGTATCTTGCCCGATAGATTATTATTCGAGAGATTCAAAATGCTAAGGGTAGATATACCGGCAAGGCTTGGAGGAATAGCTCCTGAAAGTTCATTTGACGAGAGGTCAAGGGACTCGAGATTTTTCAAACTACCAATGTTTCCAGGTATGCTGCATGACAGATGGTTTCTTGACAAGTTCAAAAATTGAAGGCCTTGGAGGTTCGTTAACTCATCAGGGATGCATTGTGATAATGAGTTACTTGACAAATCGATACCCGTAAGTAGTTGAAAAAAATTTAATCCAGAAATTTTTATTTCAAAAATTTGCTCCTGCCCCTTCCAGATTGTATCAATTCTTTCATCGGAACTAAGCCATTGTAATAATTCCTGAGGAGATATTAAGTTTTTTATTCTTCATGGAAGTGAGGTTACTAAAAGATCTGGGAATCGATCCTGTCAGACCATTGTTGCTCATGTCTAGTAGTTGAAGTTGAGAAAGCTGCGACAACTCCGAAGGAATTTCACCAGTGAAGTTGTTTGATTTAAGGATAAGAATCCTCATCGAAGGAAATCCTTTCCCAATCCAAGGAGGAATATTACCGAAGAACTTGTTATTCCCAAAATCTAAGGAGACCAGTGTCTTACATCCCTCTAAAGTTGATGGAAAAACTCCAGTGAAACCGTTGCCAGCAAGATATACCGAATGAAGAGAACAATTGTAGCTTGTCCCGAGTGCAGAGATTTCACCTGAGAAGTCGTTGTGGGAGAGGTCCATGAACTGCAGATTCTGCAGGTTCCACCAGCAGTCGGGCAGCTTACCAGTGAGCTTGTTGTTTGAAAGGTCTAGATTCTCGAGGGAGAGCAGCCTGCAGAATGCTGAGCCAGAGCTGCAATTGGAGGAATTCCCTGATGAACCAACTCCCTGCAGCTTGAAATTGTTTCCCAAATTTCCCATAATTGGCCCCGAAATGGAGTTATGGCTAAGATTGAGGAATTGCAAATTGCTGAGATGACCCAACTCATATGGAATGCCTCCTGTCAGATTATTCGCTGACAGATCAAGATACTTCAAGCTTGTCAAGCTCCCCAATGCCGGAGGAATGCTGCCGGATAATCTATTGTCGTACATGGACAGCATATTCAGTTTCCTTGCCTTACCAAGCTCTGGTGGGATATTTCCAGTGAACAT
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| CDS seq | ATGTTCACTGGAAATATCCCACCAGAGCTTGGTAAGGCAAGGAAACTGAATATGCTGTCCATGTACGACAATAGATTATCCGGCAGCATTCCTCCGGCATTGGGGAGCTTGACAAGCTTGAAGTATCTTGATCTGTCAGCGAATAATCTGACAGGAGGCATTCCATATGAGTTGGGTCATCTCAGCAATTTGCAATTCCTCAATCTTAGCCATAACTCCATTTCGGGGCCAATTATGGGAAATTTGGGAAACAATTTCAAGCTGCAGGGAGTTGGTTCATCAGGGAATTCCTCCAATTGCAGCTCTGGCTCAGCATTCTGCAGGCTGCTCTCCCTCGAGAATCTAGACCTTTCAAACAACAAGCTCACTGGTAAGCTGCCCGACTGCTGGTGGAACCTGCAGAATCTGCAGTTCATGGACCTCTCCCACAACGACTTCTCAGGTGAAATCTCTGCACTCGGGACAAGCTACAATTGTTCTCTTCATTCGGTATATCTTGCTGGCAACGGTTTCACTGGAGTTTTTCCATCAACTTTAGAGGGATGTAAGACACTGGTCTCCTTAGATTTTGGGAATAACAAGTTCTTCGGTAATATTCCTCCTTGGATTGGGAAAGGATTTCCTTCGATGAGGATTCTTATCCTTAAATCAAACAACTTCACTGGTGAAATTCCTTCGGAGTTGTCGCAGCTTTCTCAACTTCAACTACTAGACATGAGCAACAATGGTCTGACAGGATCGATTCCCAGATCTTTTAGTAACCTCACTTCCATGAAGAATAAAAAACTTAATATCTCCTCAGGAATTATTACAATGGCTTAG
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| Protein seq | MFTGNIPPELGKARKLNMLSMYDNRLSGSIPPALGSLTSLKYLDLSANNLTGGIPYELGHLSNLQFLNLSHNSISGPIMGNLGNNFKLQGVGSSGNSSNCSSGSAFCRLLSLENLDLSNNKLTGKLPDCWWNLQNLQFMDLSHNDFSGEISALGTSYNCSLHSVYLAGNGFTGVFPSTLEGCKTLVSLDFGNNKFFGNIPPWIGKGFPSMRILILKSNNFTGEIPSELSQLSQLQLLDMSNNGLTGSIPRSFSNLTSMKNKKLNISSGIITMA |
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| Function | LRR receptor-like serine/threonine-protein kinase GSO1 [UniProtKB/Swiss-Prot:C0LGQ5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0468800 | OsNip_10t0468800-00 | Chr10 | 17319498 | 17321082 | - | RAP2018-11-26 | ||
| CDS seq | ATGTTCACTGGAAATATCCCACCAGAGCTTGGTAAGGCAAGGAAACTGAATATGCTGTCCATGTACGACAATAGATTATCCGGCAGCATTCCTCCGGCATTGGGGAGCTTGACAAGCTTGAAGTATCTTGATCTGTCAGCGAATAATCTGACAGGAGGCATTCCATATGAGTTGGGTCATCTCAGCAATTTGCAATTCCTCAATCTTAGCCATAACTCCATTTCGGGGCCAATTATGGGAAATTTGGGAAACAATTTCAAGCTGCAGGGAGTTGGTTCATCAGGGAATTCCTCCAATTGCAGCTCTGGCTCAGCATTCTGCAGGCTGCTCTCCCTCGAGAATCTAGACCTTTCAAACAACAAGCTCACTGGTAAGCTGCCCGACTGCTGGTGGAACCTGCAGAATCTGCAGTTCATGGACCTCTCCCACAACGACTTCTCAGGTGAAATCTCTGCACTCGGGACAAGCTACAATTGTTCTCTTCATTCGGTATATCTTGCTGGCAACGGTTTCACTGGAGTTTTTCCATCAACTTTAGAGGGATGTAAGACACTGGTCTCCTTAGATTTTGGGAATAACAAGTTCTTCGGTAATATTCCTCCTTGGATTGGGAAAGGATTTCCTTCGATGAGGATTCTTATCCTTAAATCAAACAACTTCACTGGTGAAATTCCTTCGGAGTTGTCGCAGCTTTCTCAACTTCAACTACTAGACATGAGCAACAATGGTCTGACAGGATCGATTCCCAGATCTTTTAGTAACCTCACTTCCATGAAGAATAAAAAACTTAATATCTCCTCAGGAATTATTACAATGGCTTAG
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| Protein seq | MFTGNIPPELGKARKLNMLSMYDNRLSGSIPPALGSLTSLKYLDLSANNLTGGIPYELGHLSNLQFLNLSHNSISGPIMGNLGNNFKLQGVGSSGNSSNCSSGSAFCRLLSLENLDLSNNKLTGKLPDCWWNLQNLQFMDLSHNDFSGEISALGTSYNCSLHSVYLAGNGFTGVFPSTLEGCKTLVSLDFGNNKFFGNIPPWIGKGFPSMRILILKSNNFTGEIPSELSQLSQLQLLDMSNNGLTGSIPRSFSNLTSMKNKKLNISSGIITMA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0469000 | SBH | 0.066815 | 0.068521 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g33080 | RBH | 0.039527 | 0.040316 | 0.336083 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0469000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0013990 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0014200 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0013710 | RBH | 0.0 | 6.074656 | 0.503720 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0014060 | SBH | 0.000000 | 0.089605 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0013910 | SBH | 0.181931 | 21.960766 | 0.247718 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0288100 | RBH | 0.0166625 | 1.2979955 | 0.0108265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0013930 | RBH | 0.0 | 0.637118 | 0.109359 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0309400 | RBH | 0.0272545 | 0.2828915 | 0.011616 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0013710 | SBH | 0.014096 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0013590 | SBH | 0.042996 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0013930 | SBH | 0.0 | 2.543053 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0013640 | RBH | 0.0 | 0.0 | 0.057709 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0014180 | RBH | 0.040970 | 2.252450 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G013900 | SBH | 0.0 | 0.476957 | 0.127443 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0013840 | SBH | 0.0 | 0.0 | 0.0 |
