Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0468301 | OGI:07002380 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:17298120-17299994 | ||||||||
| Gene Symbol | MSL35, OsMSL35 | ||||||||||
| DNA seq | GCATTTGACCACCATGGCATTCAAGGTCAATTACTAGTCTTGTACTCCAAGTTTGTCACATTCTACTTAATGAAGTAACTACTTGCATGCACTCCCTCTAAGCAAAAGTATATCCTACTACTATCTGCTTCACAAAAGTACCCCCTTTGTTTCACAAAAGTACTATCCTTCTATTTGCATGCCATCTATTTCACAAAAGTACTATCCTACTACTTGCATGCCATATGTTTCACAAAAGTACTCACTCTAATGCTGCGATTTCCTTTCTAATCCAAGCCAGGCGTAATGCATCACTTGAAAAGGACAAGAAAACTTCCCTATTATCCTTACCTTTGAAGATATCAGCTGCCACCAATATATCTCCTATTTGTAGACCATGTAAACCTTCAAGCACTGTGATACACTTGTTGATGCTGTAAGGATCCTCCAATTTCTTCTCCTCAATTGCAGCAAATCGATCTATGTCTTCTTTTTTAAGTTTTAGGTATCTCTCATGAAATCCATCATCAGGACTAACAGATTTGATCTTTTGTTTCTTCCCAGGTCGAGATTCAGGAACCTCTGAAGGTGTTTGTGCCGAGCTAGGTGGGACTTTTGTGAGATGGACAGGGGTAGGTGAATGCTGTGAAAAGTCCAAATTGGCTGTCTCAACCTCTTCACCAAAAGGAAATTGCAAACCTGATTCACCTGGAGCATTTGAATTAGGGGATGGTGACTGATATGTATCAACCGCATTTGCTTCTTGTGTTGAATGAGCTGGTGCATTCTTTGTCTTCCTTGCATAATGGTCCATACCATGGCGAGTTCTCCCTTCAGCATAACGACCTGCACAATTATATTCTCCTCACGATCAGCATAACTTGCCTAAAACATTTCAACAAAACAAACAAACCACTGATAAAAAAAATATAAAGCTCACCATCATAAAGTGGAGCTAAATCATCAAAATATGGGAACGACTTATCTCGCCAATGAATTGCATCTTTGTTCTTGCGATCAGCAAAAGTGTCCCAAACACTTTGTGGTGCACTCACCATCATTCTGTCACTATCCCACCCAAAACCACTTTGATCCAACAAATCTTTAACACTGCGATAATCTTTCTTCAAATCCTGCTCCTTTTGCTTGACTTGGTTGGTCGTAAATGATGTACCGAATTTTGTATTCAGGCGGCAAACAATATTTGTCCATGCTTCCTTACTCCAAGCATTTTGTGTTCGAAAACCTGGCACGTCATGATCTGTTAGGAGCTCAATAAGGAACATCTTCATCTGGTGACTCCATCTGGCTCTCTTTGCCGTCCCTAAATTTGACAAACATTTAACAATTTCAGTTTCAGCAGCAATATGAAACAAAAAAGGTTTGATGCAAACAACAAGTGAAACTGAATTTGCAAATATTACCTATTTCTTGACGCTCTGCAGTCCCATGCTCACTGTCAACATCAACATAAACCTGTGATAGAGGTTGCTGGGCTCGTCGATCGGACAAATTGCGTTGATTTGTCATGGTCATCTGAGAAGAGCCTTTCGATGGCATTGCTTTCCTAACCCCCCAAAAAAAAGAAAGAAAAAAGAAATACACAATCCTTATCAGAGAGGGATTTACACCTACAGTGCCAATGAAACAAACTAGTTCCAAGTAGTCAGCTTAAAAATTCACTAATCCATAGATCCAAAGTACAGAAGCACTAATAAGTCAATAATAAGTCAAGTATGAAAGCTCAAAAGTGCAGACAAATACCAAATCGATGGCCCTGGCTGCTGCCCTCGATGGCGGACCTGCCGCACGCCTCCGCCTAGCGGAGCCCAACCTGCGCGCCAGATGGATGCTGTGCTTGGTTGCTGCGTGCTGCTAGTTGTTGGGCCGGCGTCC
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| CDS seq | GACGCCGGCCCAACAACTAGCAGCACGCAGCAACCAAGCACAGCATCCATCTGGCGCGCAGGTTGGGCTCCGCTAGGCGGAGGCGTGCGGCAGGTCCGCCATCGAGGGCAGCAGCCAGGGCCATCGATTTGGAAAGCAATGCCATCGAAAGGCTCTTCTCAGATGACCATGACAAATCAACGCAATTTGTCCGATCGACGAGCCCAGCAACCTCTATCACAGGTTTATGTTGATGTTGACAGTGAGCATGGGACTGCAGAGCGTCAAGAAATAGGGACGGCAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTCCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGACATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGCAGCATTAGAGTGA
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| Protein seq | DAGPTTSSTQQPSTASIWRAGWAPLGGGVRQVRHRGQQPGPSIWKAMPSKGSSQMTMTNQRNLSDRRAQQPLSQVYVDVDSEHGTAERQEIGTAKRARWSHQMKMFLIELLTDHDVPGFRTQNAWSKEAWTNIVCRLNTKFGTSFTTNQVKQKEQDLKKDYRSVKDLLDQSGFGWDSDRMMVSAPQSVWDTFADRKNKDAIHWRDKSFPYFDDLAPLYDGRYAEGRTRHGMDHYARKTKNAPAHSTQEANAVDTYQSPSPNSNAPGESGLQFPFGEEVETANLDFSQHSPTPVHLTKVPPSSAQTPSEVPESRPGKKQKIKSVSPDDGFHERYLKLKKEDIDRFAAIEEKKLEDPYSINKCITVLEGLHGLQIGDILVAADIFKGKDNREVFLSFSSDALRLAWIRKEIAALE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0468301 | OsNip_10t0468301-00 | Chr10 | 17298120 | 17299994 | - | RAP2018-11-26 | ||
| CDS seq | GACGCCGGCCCAACAACTAGCAGCACGCAGCAACCAAGCACAGCATCCATCTGGCGCGCAGGTTGGGCTCCGCTAGGCGGAGGCGTGCGGCAGGTCCGCCATCGAGGGCAGCAGCCAGGGCCATCGATTTGGAAAGCAATGCCATCGAAAGGCTCTTCTCAGATGACCATGACAAATCAACGCAATTTGTCCGATCGACGAGCCCAGCAACCTCTATCACAGGTTTATGTTGATGTTGACAGTGAGCATGGGACTGCAGAGCGTCAAGAAATAGGGACGGCAAAGAGAGCCAGATGGAGTCACCAGATGAAGATGTTCCTTATTGAGCTCCTAACAGATCATGACGTGCCAGGTTTTCGAACACAAAATGCTTGGAGTAAGGAAGCATGGACAAATATTGTTTGCCGCCTGAATACAAAATTCGGTACATCATTTACGACCAACCAAGTCAAGCAAAAGGAGCAGGATTTGAAGAAAGATTATCGCAGTGTTAAAGATTTGTTGGATCAAAGTGGTTTTGGGTGGGATAGTGACAGAATGATGGTGAGTGCACCACAAAGTGTTTGGGACACTTTTGCTGATCGCAAGAACAAAGATGCAATTCATTGGCGAGATAAGTCGTTCCCATATTTTGATGATTTAGCTCCACTTTATGATGGTCGTTATGCTGAAGGGAGAACTCGCCATGGTATGGACCATTATGCAAGGAAGACAAAGAATGCACCAGCTCATTCAACACAAGAAGCAAATGCGGTTGATACATATCAGTCACCATCCCCTAATTCAAATGCTCCAGGTGAATCAGGTTTGCAATTTCCTTTTGGTGAAGAGGTTGAGACAGCCAATTTGGACTTTTCACAGCATTCACCTACCCCTGTCCATCTCACAAAAGTCCCACCTAGCTCGGCACAAACACCTTCAGAGGTTCCTGAATCTCGACCTGGGAAGAAACAAAAGATCAAATCTGTTAGTCCTGATGATGGATTTCATGAGAGATACCTAAAACTTAAAAAAGAAGACATAGATCGATTTGCTGCAATTGAGGAGAAGAAATTGGAGGATCCTTACAGCATCAACAAGTGTATCACAGTGCTTGAAGGTTTACATGGTCTACAAATAGGAGATATATTGGTGGCAGCTGATATCTTCAAAGGTAAGGATAATAGGGAAGTTTTCTTGTCCTTTTCAAGTGATGCATTACGCCTGGCTTGGATTAGAAAGGAAATCGCAGCATTAGAGTGA
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| Protein seq | DAGPTTSSTQQPSTASIWRAGWAPLGGGVRQVRHRGQQPGPSIWKAMPSKGSSQMTMTNQRNLSDRRAQQPLSQVYVDVDSEHGTAERQEIGTAKRARWSHQMKMFLIELLTDHDVPGFRTQNAWSKEAWTNIVCRLNTKFGTSFTTNQVKQKEQDLKKDYRSVKDLLDQSGFGWDSDRMMVSAPQSVWDTFADRKNKDAIHWRDKSFPYFDDLAPLYDGRYAEGRTRHGMDHYARKTKNAPAHSTQEANAVDTYQSPSPNSNAPGESGLQFPFGEEVETANLDFSQHSPTPVHLTKVPPSSAQTPSEVPESRPGKKQKIKSVSPDDGFHERYLKLKKEDIDRFAAIEEKKLEDPYSINKCITVLEGLHGLQIGDILVAADIFKGKDNREVFLSFSSDALRLAWIRKEIAALE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0210800 | SBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g33030 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0468301 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0017880 | SBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015700 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027600 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0007040 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0001050 | SBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0015100 | SBH | 0 | 0.0207445 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017690 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0388100 | SBH | 0 | 0.0492625 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0017060 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0017330 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0017160 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0027280 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0017130 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G006860 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027260 | SBH | 0.0 | 1.491151 | 32.491432 |
