Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0421800 | OGI:10048420 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:14897200-14900931 | ||||||||
| Gene Symbol | TCD10 | ||||||||||
| DNA seq | GAACAAGAACCAGCAGAACCCTCAGATATATTGAAGTGGACTATCTACAGTTGATCCTTTTCCTTTTATAGACAAAACTATACAGAAGAAGTACATTCAGTCACTAACTAGTTAGTCACAGCTGATTTGGGAGCTGCATGTACGTGCTTGAATTGGGTAGGCACCCGCCAACAATCATCCGACCATAGGCAGCATAGGCACTATCAGTACTGCCGGAAACACTGTACCCCCTAATAAGAGCGTTATATGTGAAAACGTTAGGCTTCCAGCCTTTCGTCAGTAGCTCTTCATACATTTTCCCAGCTTCAGCAGCCTTCCCTGCTTTTCCTAAGTGGAGAATTAGTGAATTATAAGTGTACAAGTTCGGGACAATTCCCTTCTTCTGCATCTCATTGAATAGAGACACTGCTTCCTCTAATCTTTTTGATTTTCCAAGACCATCAATGAGCAAATTGTAAGTAATTAGATCAGGTTCAAGACCCATTTCTAATAATTGCCTAAAATATGTTAGACCATCATTTAACTGTCCTGCCTTGCAGAGTGTGTCAATAATAATCGTGTAGGATTTTATATCTGGGTTTATTCCCTGGTCAACCATATCCTGAAACAAATGACAGACCTTCTCTGTATTACCAGCTATTCGATGTCCATTCAGTAGTATATTGTAGATAGTGCAATTGGCCTTGCATCCATACTCCAGCATCTCATTGAAAAGATTTTCTGCATCTTCTATCCTTCCAGCTTTTAACAGACCATCAAGAAGAGGGCCATATGTGCATGGTGTGGGTGAGAAACCTTGGCTCATCAGGTTGTAGTACAAATCAATAGCCTGCTCCAACCTTCTTGACTTTACAAGACCTGAAATGATTGTGTTATAAGTAACATAAGTTGATTCATATCCCTTGCGATGCATCTCTTCTTGAACTTTTAGCATTTCCTCTATCCGCATTGACTTTCCCATGGCATCAAGAAGTAAGTTGTAAGTAAACTCATCTGGACCACAACCGAGTTCCTTCATTTCAGCAAACAAGCCTTCAGCAATATCTATTAGGTTTTCATCAACAAGCCCACAAATCAAAGAATTATATAATCCAGTTTTTAGTGAAACTCCAAAGCTCTTGAACTTTTTGACAAGTTCATGTGCTTCAAGAGCTTTCTTCTGCTTACAGAGATGCTTAATTAATGGGCACAAAAAGAAATCATCCAAGGTAATACCACTTGATGCTATGATTTCAGCAAACTCAATTGACTTTTCGATGCCAGCCTTCTTCAGTATCCCTTCCATTAGTGAATGGCATGAAGACCTATCTGTTTTGGAGCCAGGTTGGAGGAAGTAGTCCTTGATAATATGCAGAGCTTCCTTCATCAGTCCAATTTTCACAAAACTTGGGAGGATAGTACACAGTGTTGCATAATCTGGAATAAGAACCTTCTTCATCTGACAAAAAATACTGAATGCCTCATTATATCTTTCTTCTTTAACAAGGCCATATATAACAGTGTTGTAAGACGAAAGATCAGGTATGCATCCTTTCGTAGTCATACTGTATAGCATATCAAGTGCATCATTAACTGCCCCGTTCTTGCAGAGACAGTCAAGAATCGTATTGTATGTTATCAAATTAGGAGGATAATTACTGTGGTACATTTCTTCAAGCAGATGCATTACCTCCTTGACTTTACCTTCCCTTCCCAATCCTGCCAAAAGTGTATTGTAAGTCCCATCTGTTGGCTCTAGATTCATTTCTTTTAGTTGATAAAAGATCCGCCAGGCTTCATCACCCCTGCCTGCCTTGTAGAGTGTATCAATCAAAGAATTCACGGCAAGAACATCAGGAACACAATTATTTTCAATCATATCATAGAAAATCTTCACAGCTTCATCAAATTTTGATGCCTTGCTGCAACACTTGATCATCATAGTGTAGGTGATAGTATCCGGAGAAACCCCCATAGCTTTTAATTCATGAAATACCCTTTTTGCCATGCCAAGTCTACCAGATTTGGCAAGACCAAACAAAACAGCATTACCAGCAACAACATCTGGCACAATCCCTTTGCTCTTCATTAGTTCATATCTCTGTATTGCCTTTATAGATTCACCAGATTTTCCATAGTAATTTATGAAAAGAACATGTGTGTAACCATTTGGTTTAGGTCCATGAATATCCATATGTTTAAACAGCTCTAAGGCATCACCAAATCTATCAGCTTTAAGAAACCCCGATATCAGCGAGTTGTATGAATACTGCTCAGGCACTATACCCTTTTGTTTCATCTCATCAAACATTTCCAAAGCTTCAAAGACCCTCCCAACTTGGCACAATGCATCAATAACTGCTGTATAAGCAACAACATTGTCATTGTACCCATCAGCTTTCATTGCATTCCAGATTTCCATCACTGATTGCGAGTCACCATTGTCACCAAACTTATCTAACAGAGTAATGTAGGTCACTCGATCAGGTTTTTGATCACTCTTCTTCATCTTCCAAAAAACATCCTTGGCATCACTGATACGGCCAGCATCGCAAAGAACCTGTATAAGCACGGTATGGGTAATGACATCCGGCTTACACCCTTCATTCTCCATTTTCGCAAGTATCCGATAAGCTTCATCGAATCTTTTGGCTTGTCCAAGAACTCGAATACAGATGGTGTAGCTATACACATTCGGCTTCACGCCATGAGCCTCCATTTCACGCAACAACCAAAGAACCGTCTCGACATCCCTCCTCTTCCCGAACGCCACCATCAGCACAGAGTAGGTTCTCACACTAGGCACAACACCATCCACCATCATCACCCTATAAACCTCCAACGCCTCCCTATCAAACCCGGACTTCACAAGGAAATAAACCAGGCCATTATACGTGTACGCGTTCAAGACAATCCCGGCCTCCTTCATGACCGGCAGCGCCACCGGCGCGCTCCGGAGTCCCCCCTCCACACCAAGCCCTCCGAAGATCGCCGCGAACGTGCCCACGTTCGCCTTGACGATCTGCCTCTGCATTACGTCGAACACCTCGGCCATGTCCCCGACCCGGCCATGGCCGCGCATGAGCTCGAGCATGTAGTTGCACGACGCGGTCGTGTGGGCCACCCTGGGCTTCCGCGCCGCCGACCTGAACCGCTCAAGCGCCTCGGCGGGGCCATCCGCCGACCTGAGCGCGTGGATGACGTCCTCCGCCGCCCTCCGCTCGTCGCACGGCGGCGGCGCGCGCGGCTGCACCCGGGCGCGGCCGATTCGCCGCTTACTGGGCCGAGACGGCGATAGTCCAGGTGAGGAAACCCCCGCAGTCCTCGACGACGGCGGCGACCCGCCGAGGACGCCGGAGCAGCAGCAGACCTCCAACATCCGGCGAGCAACAACGACAACAACAACACCTGAAAAATTCCCAAGAAGCACCAAGAAACTGAGAGAATTTCAAGAAACATCAGCGAGAATCCAACTTGAGACGAACAAACAAACTGTTACTACTTGTATTAAGGTTAAGTATCGGAAATTAAGAGAGGAGCTTAACGAAAGCAAAGCAAATTCCAGGCAAAAGTAGTCCCGGTGGGAGAGAGAGAGATGAATCAGGAAGAGGATGTGGATGCTCACCACACCAGGATCCCCTCCCTTGCTCTTGCTCTGCTCGCCAGATGGAGATAGGCGGCCCTCCCCTCCACTCCCCTGTTCAGCCGCGAGATGGCGCAAGGAGTGGAGTGGAGACGGGAGATATTTTTTTT
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| CDS seq | ACAGGGGAGTGGAGGGGAGGGCCGCCTATCTCCATCTGGCGAGCAGAGCAAGAGCAAGGGAGGGGATCCTGGTGTGGTGTTGTTGTTGTCGTTGTTGCTCGCCGGATGTTGGAGGTCTGCTGCTGCTCCGGCGTCCTCGGCGGGTCGCCGCCGTCGTCGAGGACTGCGGGGGTTTCCTCACCTGGACTATCGCCGTCTCGGCCCAGTAAGCGGCGAATCGGCCGCGCCCGGGTGCAGCCGCGCGCGCCGCCGCCGTGCGACGAGCGGAGGGCGGCGGAGGACGTCATCCACGCGCTCAGGTCGGCGGATGGCCCCGCCGAGGCGCTTGAGCGGTTCAGGTCGGCGGCGCGGAAGCCCAGGGTGGCCCACACGACCGCGTCGTGCAACTACATGCTCGAGCTCATGCGCGGCCATGGCCGGGTCGGGGACATGGCCGAGGTGTTCGACGTAATGCAGAGGCAGATCGTCAAGGCGAACGTGGGCACGTTCGCGGCGATCTTCGGAGGGCTTGGTGTGGAGGGGGGACTCCGGAGCGCGCCGGTGGCGCTGCCGGTCATGAAGGAGGCCGGGATTGTCTTGAACGCGTACACGTATAATGGCCTGGTTTATTTCCTTGTGAAGTCCGGGTTTGATAGGGAGGCGTTGGAGGTTTATAGGGTGATGATGGTGGATGGTGTTGTGCCTAGTGTGAGAACCTACTCTGTGCTGATGGTGGCGTTCGGGAAGAGGAGGGATGTCGAGACGGTTCTTTGGTTGTTGCGTGAAATGGAGGCTCATGGCGTGAAGCCGAATGTGTATAGCTACACCATCTGTATTCGAGTTCTTGGACAAGCCAAAAGATTCGATGAAGCTTATCGGATACTTGCGAAAATGGAGAATGAAGGGTGTAAGCCGGATGTCATTACCCATACCGTGCTTATACAGGTTCTTTGCGATGCTGGCCGTATCAGTGATGCCAAGGATGTTTTTTGGAAGATGAAGAAGAGTGATCAAAAACCTGATCGAGTGACCTACATTACTCTGTTAGATAAGTTTGGTGACAATGGTGACTCGCAATCAGTGATGGAAATCTGGAATGCAATGAAAGCTGATGGGTACAATGACAATGTTGTTGCTTATACAGCAGTTATTGATGCATTGTGCCAAGTTGGGAGGGTCTTTGAAGCTTTGGAAATGTTTGATGAGATGAAACAAAAGGGTATAGTGCCTGAGCAGTATTCATACAACTCGCTGATATCGGGGTTTCTTAAAGCTGATAGATTTGGTGATGCCTTAGAGCTGTTTAAACATATGGATATTCATGGACCTAAACCAAATGGTTACACACATGTTCTTTTCATAAATTACTATGGAAAATCTGGTGAATCTATAAAGGCAATACAGAGATATGAACTAATGAAGAGCAAAGGGATTGTGCCAGATGTTGTTGCTGGTAATGCTGTTTTGTTTGGTCTTGCCAAATCTGGTAGACTTGGCATGGCAAAAAGGGTATTTCATGAATTAAAAGCTATGGGGGTTTCTCCGGATACTATCACCTACACTATGATGATCAAGTGTTGCAGCAAGGCATCAAAATTTGATGAAGCTGTGAAGATTTTCTATGATATGATTGAAAATAATTGTGTTCCTGATGTTCTTGCCGTGAATTCTTTGATTGATACACTCTACAAGGCAGGCAGGGGTGATGAAGCCTGGCGGATCTTTTATCAACTAAAAGAAATGAATCTAGAGCCAACAGATGGGACTTACAATACACTTTTGGCAGGATTGGGAAGGGAAGGTAAAGTCAAGGAGGTAATGCATCTGCTTGAAGAAATGTACCACAGTAATTATCCTCCTAATTTGATAACATACAATACGATTCTTGACTGTCTCTGCAAGAACGGGGCAGTTAATGATGCACTTGATATGCTATACAGTATGACTACGAAAGGATGCATACCTGATCTTTCGTCTTACAACACTGTTATATATGGCCTTGTTAAAGAAGAAAGATATAATGAGGCATTCAGTATTTTTTGTCAGATGAAGAAGGTTCTTATTCCAGATTATGCAACACTGTGTACTATCCTCCCAAGTTTTGTGAAAATTGGACTGATGAAGGAAGCTCTGCATATTATCAAGGACTACTTCCTCCAACCTGGCTCCAAAACAGATAGGTCTTCATGCCATTCACTAATGGAAGGGATACTGAAGAAGGCTGGCATCGAAAAGTCAATTGAGTTTGCTGAAATCATAGCATCAAGTGGTATTACCTTGGATGATTTCTTTTTGTGCCCATTAATTAAGCATCTCTGTAAGCAGAAGAAAGCTCTTGAAGCACATGAACTTGTCAAAAAGTTCAAGAGCTTTGGAGTTTCACTAAAAACTGGATTATATAATTCTTTGATTTGTGGGCTTGTTGATGAAAACCTAATAGATATTGCTGAAGGCTTGTTTGCTGAAATGAAGGAACTCGGTTGTGGTCCAGATGAGTTTACTTACAACTTACTTCTTGATGCCATGGGAAAGTCAATGCGGATAGAGGAAATGCTAAAAGTTCAAGAAGAGATGCATCGCAAGGGATATGAATCAACTTATGTTACTTATAACACAATCATTTCAGGTCTTGTAAAGTCAAGAAGGTTGGAGCAGGCTATTGATTTGTACTACAACCTGATGAGCCAAGGTTTCTCACCCACACCATGCACATATGGCCCTCTTCTTGATGGTCTGTTAAAAGCTGGAAGGATAGAAGATGCAGAAAATCTTTTCAATGAGATGCTGGAGTATGGATGCAAGGCCAATTGCACTATCTACAATATACTACTGAATGGACATCGAATAGCTGGTAATACAGAGAAGGTCTGTCATTTGTTTCAGGATATGGTTGACCAGGGAATAAACCCAGATATAAAATCCTACACGATTATTATTGAC
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| Protein seq | TGEWRGGPPISIWRAEQEQGRGSWCGVVVVVVARRMLEVCCCSGVLGGSPPSSRTAGVSSPGLSPSRPSKRRIGRARVQPRAPPPCDERRAAEDVIHALRSADGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIID |
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| Function | Pentatricopeptide repeat-containing protein At4g31850, chloroplastic [UniProtKB/Swiss-Prot:Q9SZ52] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0421800 | OsNip_10t0421800-01 | Chr10 | 14897744 | 14900931 | - | RAP2018-11-26 | ||
| CDS seq | ACAGGGGAGTGGAGGGGAGGGCCGCCTATCTCCATCTGGCGAGCAGAGCAAGAGCAAGGGAGGGGATCCTGGTGTGGTGTTGTTGTTGTCGTTGTTGCTCGCCGGATGTTGGAGGTCTGCTGCTGCTCCGGCGTCCTCGGCGGGTCGCCGCCGTCGTCGAGGACTGCGGGGGTTTCCTCACCTGGACTATCGCCGTCTCGGCCCAGTAAGCGGCGAATCGGCCGCGCCCGGGTGCAGCCGCGCGCGCCGCCGCCGTGCGACGAGCGGAGGGCGGCGGAGGACGTCATCCACGCGCTCAGGTCGGCGGATGGCCCCGCCGAGGCGCTTGAGCGGTTCAGGTCGGCGGCGCGGAAGCCCAGGGTGGCCCACACGACCGCGTCGTGCAACTACATGCTCGAGCTCATGCGCGGCCATGGCCGGGTCGGGGACATGGCCGAGGTGTTCGACGTAATGCAGAGGCAGATCGTCAAGGCGAACGTGGGCACGTTCGCGGCGATCTTCGGAGGGCTTGGTGTGGAGGGGGGACTCCGGAGCGCGCCGGTGGCGCTGCCGGTCATGAAGGAGGCCGGGATTGTCTTGAACGCGTACACGTATAATGGCCTGGTTTATTTCCTTGTGAAGTCCGGGTTTGATAGGGAGGCGTTGGAGGTTTATAGGGTGATGATGGTGGATGGTGTTGTGCCTAGTGTGAGAACCTACTCTGTGCTGATGGTGGCGTTCGGGAAGAGGAGGGATGTCGAGACGGTTCTTTGGTTGTTGCGTGAAATGGAGGCTCATGGCGTGAAGCCGAATGTGTATAGCTACACCATCTGTATTCGAGTTCTTGGACAAGCCAAAAGATTCGATGAAGCTTATCGGATACTTGCGAAAATGGAGAATGAAGGGTGTAAGCCGGATGTCATTACCCATACCGTGCTTATACAGGTTCTTTGCGATGCTGGCCGTATCAGTGATGCCAAGGATGTTTTTTGGAAGATGAAGAAGAGTGATCAAAAACCTGATCGAGTGACCTACATTACTCTGTTAGATAAGTTTGGTGACAATGGTGACTCGCAATCAGTGATGGAAATCTGGAATGCAATGAAAGCTGATGGGTACAATGACAATGTTGTTGCTTATACAGCAGTTATTGATGCATTGTGCCAAGTTGGGAGGGTCTTTGAAGCTTTGGAAATGTTTGATGAGATGAAACAAAAGGGTATAGTGCCTGAGCAGTATTCATACAACTCGCTGATATCGGGGTTTCTTAAAGCTGATAGATTTGGTGATGCCTTAGAGCTGTTTAAACATATGGATATTCATGGACCTAAACCAAATGGTTACACACATGTTCTTTTCATAAATTACTATGGAAAATCTGGTGAATCTATAAAGGCAATACAGAGATATGAACTAATGAAGAGCAAAGGGATTGTGCCAGATGTTGTTGCTGGTAATGCTGTTTTGTTTGGTCTTGCCAAATCTGGTAGACTTGGCATGGCAAAAAGGGTATTTCATGAATTAAAAGCTATGGGGGTTTCTCCGGATACTATCACCTACACTATGATGATCAAGTGTTGCAGCAAGGCATCAAAATTTGATGAAGCTGTGAAGATTTTCTATGATATGATTGAAAATAATTGTGTTCCTGATGTTCTTGCCGTGAATTCTTTGATTGATACACTCTACAAGGCAGGCAGGGGTGATGAAGCCTGGCGGATCTTTTATCAACTAAAAGAAATGAATCTAGAGCCAACAGATGGGACTTACAATACACTTTTGGCAGGATTGGGAAGGGAAGGTAAAGTCAAGGAGGTAATGCATCTGCTTGAAGAAATGTACCACAGTAATTATCCTCCTAATTTGATAACATACAATACGATTCTTGACTGTCTCTGCAAGAACGGGGCAGTTAATGATGCACTTGATATGCTATACAGTATGACTACGAAAGGATGCATACCTGATCTTTCGTCTTACAACACTGTTATATATGGCCTTGTTAAAGAAGAAAGATATAATGAGGCATTCAGTATTTTTTGTCAGATGAAGAAGGTTCTTATTCCAGATTATGCAACACTGTGTACTATCCTCCCAAGTTTTGTGAAAATTGGACTGATGAAGGAAGCTCTGCATATTATCAAGGACTACTTCCTCCAACCTGGCTCCAAAACAGATAGGTCTTCATGCCATTCACTAATGGAAGGGATACTGAAGAAGGCTGGCATCGAAAAGTCAATTGAGTTTGCTGAAATCATAGCATCAAGTGGTATTACCTTGGATGATTTCTTTTTGTGCCCATTAATTAAGCATCTCTGTAAGCAGAAGAAAGCTCTTGAAGCACATGAACTTGTCAAAAAGTTCAAGAGCTTTGGAGTTTCACTAAAAACTGGATTATATAATTCTTTGATTTGTGGGCTTGTTGATGAAAACCTAATAGATATTGCTGAAGGCTTGTTTGCTGAAATGAAGGAACTCGGTTGTGGTCCAGATGAGTTTACTTACAACTTACTTCTTGATGCCATGGGAAAGTCAATGCGGATAGAGGAAATGCTAAAAGTTCAAGAAGAGATGCATCGCAAGGGATATGAATCAACTTATGTTACTTATAACACAATCATTTCAGGTCTTGTAAAGTCAAGAAGGTTGGAGCAGGCTATTGATTTGTACTACAACCTGATGAGCCAAGGTTTCTCACCCACACCATGCACATATGGCCCTCTTCTTGATGGTCTGTTAAAAGCTGGAAGGATAGAAGATGCAGAAAATCTTTTCAATGAGATGCTGGAGTATGGATGCAAGGCCAATTGCACTATCTACAATATACTACTGAATGGACATCGAATAGCTGGTAATACAGAGAAGGTCTGTCATTTGTTTCAGGATATGGTTGACCAGGGAATAAACCCAGATATAAAATCCTACACGATTATTATTGAC
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| Protein seq | TGEWRGGPPISIWRAEQEQGRGSWCGVVVVVVARRMLEVCCCSGVLGGSPPSSRTAGVSSPGLSPSRPSKRRIGRARVQPRAPPPCDERRAAEDVIHALRSADGPAEALERFRSAARKPRVAHTTASCNYMLELMRGHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPVMKEAGIVLNAYTYNGLVYFLVKSGFDREALEVYRVMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKHMDIHGPKPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYNEAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKDYFLQPGSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLKTGLYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIID
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0421800 | OsNip_10t0421800-02 | Chr10 | 14897200 | 14899506 | - | IsoSeq | ||
| CDS seq | ATGTTGTTGCTGGTAATGCTGTTTTGTTTGGTCTTGCCAAATCTGGTAGACTTGGCATGGCAAAAAGGGTATTTCATG |
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| Protein seq | MLLLVMLFCLVLPNLVDLAWQKGYFM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 24.532410 | 24.913374 | 4.559495 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0165100 | RBH | 0.270722 | 0.553463 | 0.269234 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g28600 | RBH | 13.299459 | 13.307119 | 0.915194 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0421800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011070 | SBH | 3.756850 | 3.686613 | 4.692159 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0011370 | RBH | 2.743995 | 0.906005 | 3.000304 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0011050 | RBH | 8.147366 | 4.353622 | 9.109491 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0011390 | RBH | 1.393761 | 0.110116 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0011230 | RBH | 35.686329 | 3.850682 | 7.840232 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0251100 | RBH | 14.615803 | 7.0982225 | 13.946173 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0011250 | RBH | 2.080021 | 0.224160 | 0.566857 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0270000 | RBH | 9.524412 | 6.6837195 | 8.083938 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0011040 | RBH | 1.361800 | 0.069394 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0010990 | SBH | 5.778031 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0011420 | RBH | 23.663128 | 4.639738 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0010990 | RBH | 3.967269 | 0.0 | 1.049632 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0011480 | RBH | 1.269213 | 3.016779 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011330 | RBH | 2.906524 | 0.744292 | 1.686338 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0011260 | RBH | 6.046356 | 10.414731 | 4.936269 |
