Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0329900 | OGI:10032490 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:9284772-9285986 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGCGTGTCACAAAATAGTTCATTGTAAGGCATAGAGTAAGTGGACGACCATTTGCAATTTCATTAGTCGTTAATTTGGAACAGAAAATGGAGCGGATAATTAAGAAGACACACTCACATTGTTTTGCTTGCAATTTTCTCCAGAGGTAAATGGAGAGCACAGACAGAAGTGCAATTATTACAGCAGCAAGGACAGATACAACAACAGTTGCGGCATTTGGGCGCCTTCTCCTGTTTCCTGCAGTAAAATGCAAATGTGCCGTTATTTCAGAATAATCAGAGGACAGGACGACAGGTATGCTAGAAATTTGGTTATCCGGCCTTGTAGTGTTGAACAACTCACCTATAATCAGAGTTGTTGAACCATTAATGTTGGGACCCTCGAGTGATGGCGACGCGACGAGCCTCACCGCTGGGTCACCGTCGTAGAAGACCGATGTCTCATACCTAAGGTTGCACCACACAGCATTGAACTGCCCCCCAATCCTTCCACCAAAAGCCTGGGGCATGTCGACGATGAGCGCCTGGAGACACGCGCGGCACGCCGGCGGCGCCAGGTCTGGTGCACACTGCACCAGCCCATAGATGTTGTGCACCATGTACCCCGTTGTTGACGGGAACCCGTCGCTCGAGGCCATCACCCCTGCGGCGTACCTCAACGTCGAGTTGTACGCCGCCCAGTCCGCCAGCGCACCAGCGAGGCGTGTCACGAGCGCGTCGAAGTGGCCTGCGTTGACGGTGGCTTGGTACTTGCTGGGGCTTACCATGAGCACCTCCGTATTGTCGGGCCTCGCCGTGAAGTCCCCGTACGAGAACCGCGCGATGCAGCGGTCGTAGAAGACGGTCACGTCCCTGACGCCGCGGCACTGGTGGAAGGCGATAGCCGGCACGGCGGCGACGCAGGACGCGCACACGGCATGGTCGGTGTCACCCCGGCAGAGCGCAAGGCCCCAGACCGTGTCCGCGCCGCGCCCTGCCGACGCGGTGGCGAAGCCTGTGGTGGCGTTGGGCGTGCTGGCGGACAGCGTGGCGAGCACGGCGCGGACGTTGGAGTCGTAGGTGGAGTTCTCGGCGTAGGAGCTACCGTTGTTGCAGGAGTAGTTCATGAGCACCTGAGCGCGGCAATGGCGGGGGATGGAGAAGAGAGGAGCAAGCAGCACCAATGGTACTAGGGTGGACCACAACATCGTCGGCACAGTCATGGCGCTGGTCAT
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| CDS seq | ATGACCAGCGCCATGACTGTGCCGACGATGTTGTGGTCCACCCTAGTACCATTGGTGCTGCTTGCTCCTCTCTTCTCCATCCCCCGCCATTGCCGCGCTCAGGTGCTCATGAACTACTCCTGCAACAACGGTAGCTCCTACGCCGAGAACTCCACCTACGACTCCAACGTCCGCGCCGTGCTCGCCACGCTGTCCGCCAGCACGCCCAACGCCACCACAGGCTTCGCCACCGCGTCGGCAGGGCGCGGCGCGGACACGGTCTGGGGCCTTGCGCTCTGCCGGGGTGACACCGACCATGCCGTGTGCGCGTCCTGCGTCGCCGCCGTGCCGGCTATCGCCTTCCACCAGTGCCGCGGCGTCAGGGACGTGACCGTCTTCTACGACCGCTGCATCGCGCGGTTCTCGTACGGGGACTTCACGGCGAGGCCCGACAATACGGAGGTGCTCATGGTAAGCCCCAGCAAGTACCAAGCCACCGTCAACGCAGGCCACTTCGACGCGCTCGTGACACGCCTCGCTGGTGCGCTGGCGGACTGGGCGGCGTACAACTCGACGTTGAGGTACGCCGCAGGGGTGATGGCCTCGAGCGACGGGTTCCCGTCAACAACGGGGTACATGGTGCACAACATCTATGGGCTGGTGCAGTGTGCACCAGACCTGGCGCCGCCGGCGTGCCGCGCGTGTCTCCAGGCGCTCATCGTCGACATGCCCCAGGCTTTTGGTGGAAGGATTGGGGGGCAGTTCAATGCTGTGTGGTGCAACCTTAGGTATGAGACATCGGTCTTCTACGACGGTGACCCAGCGGTGAGGCTCGTCGCGTCGCCATCACTCGAGGGTCCCAACATTAATGGTTCAACAACTCTGATTATAGGTGAGTTGTTCAACACTACAAGGCCGGATAACCAAATTTCTAGCATACCTGTCGTCCTGTCCTCTGATTATTCTGAAATAACGGCACATTTGCATTTTACTGCAGGAAACAGGAGAAGGCGCCCAAATGCCGCAACTGTTGTTGTATCTGTCCTTGCTGCTGTAATAATTGCACTTCTGTCTGTGCTCTCCATTTACCTCTGGAGAAAATTGCAAGCAAAACAATGTGAGTGTGTCTTCTTAATTATCCGCTCCATTTTCTGTTCCAAATTAACGACTAATGAAATTGCAAATGGTCGTCCACTTACTCTATGCCTTACAATGAACTATTTTGTGACACGCTAG
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| Protein seq | MTSAMTVPTMLWSTLVPLVLLAPLFSIPRHCRAQVLMNYSCNNGSSYAENSTYDSNVRAVLATLSASTPNATTGFATASAGRGADTVWGLALCRGDTDHAVCASCVAAVPAIAFHQCRGVRDVTVFYDRCIARFSYGDFTARPDNTEVLMVSPSKYQATVNAGHFDALVTRLAGALADWAAYNSTLRYAAGVMASSDGFPSTTGYMVHNIYGLVQCAPDLAPPACRACLQALIVDMPQAFGGRIGGQFNAVWCNLRYETSVFYDGDPAVRLVASPSLEGPNINGSTTLIIGELFNTTRPDNQISSIPVVLSSDYSEITAHLHFTAGNRRRRPNAATVVVSVLAAVIIALLSVLSIYLWRKLQAKQCECVFLIIRSIFCSKLTTNEIANGRPLTLCLTMNYFVTR |
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| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0329900 | OsNip_10t0329900-00 | Chr10 | 9284772 | 9285986 | - | RAP2018-11-26 | ||
| CDS seq | ATGACCAGCGCCATGACTGTGCCGACGATGTTGTGGTCCACCCTAGTACCATTGGTGCTGCTTGCTCCTCTCTTCTCCATCCCCCGCCATTGCCGCGCTCAGGTGCTCATGAACTACTCCTGCAACAACGGTAGCTCCTACGCCGAGAACTCCACCTACGACTCCAACGTCCGCGCCGTGCTCGCCACGCTGTCCGCCAGCACGCCCAACGCCACCACAGGCTTCGCCACCGCGTCGGCAGGGCGCGGCGCGGACACGGTCTGGGGCCTTGCGCTCTGCCGGGGTGACACCGACCATGCCGTGTGCGCGTCCTGCGTCGCCGCCGTGCCGGCTATCGCCTTCCACCAGTGCCGCGGCGTCAGGGACGTGACCGTCTTCTACGACCGCTGCATCGCGCGGTTCTCGTACGGGGACTTCACGGCGAGGCCCGACAATACGGAGGTGCTCATGGTAAGCCCCAGCAAGTACCAAGCCACCGTCAACGCAGGCCACTTCGACGCGCTCGTGACACGCCTCGCTGGTGCGCTGGCGGACTGGGCGGCGTACAACTCGACGTTGAGGTACGCCGCAGGGGTGATGGCCTCGAGCGACGGGTTCCCGTCAACAACGGGGTACATGGTGCACAACATCTATGGGCTGGTGCAGTGTGCACCAGACCTGGCGCCGCCGGCGTGCCGCGCGTGTCTCCAGGCGCTCATCGTCGACATGCCCCAGGCTTTTGGTGGAAGGATTGGGGGGCAGTTCAATGCTGTGTGGTGCAACCTTAGGTATGAGACATCGGTCTTCTACGACGGTGACCCAGCGGTGAGGCTCGTCGCGTCGCCATCACTCGAGGGTCCCAACATTAATGGTTCAACAACTCTGATTATAGGTGAGTTGTTCAACACTACAAGGCCGGATAACCAAATTTCTAGCATACCTGTCGTCCTGTCCTCTGATTATTCTGAAATAACGGCACATTTGCATTTTACTGCAGGAAACAGGAGAAGGCGCCCAAATGCCGCAACTGTTGTTGTATCTGTCCTTGCTGCTGTAATAATTGCACTTCTGTCTGTGCTCTCCATTTACCTCTGGAGAAAATTGCAAGCAAAACAATGTGAGTGTGTCTTCTTAATTATCCGCTCCATTTTCTGTTCCAAATTAACGACTAATGAAATTGCAAATGGTCGTCCACTTACTCTATGCCTTACAATGAACTATTTTGTGACACGCTAG
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| Protein seq | MTSAMTVPTMLWSTLVPLVLLAPLFSIPRHCRAQVLMNYSCNNGSSYAENSTYDSNVRAVLATLSASTPNATTGFATASAGRGADTVWGLALCRGDTDHAVCASCVAAVPAIAFHQCRGVRDVTVFYDRCIARFSYGDFTARPDNTEVLMVSPSKYQATVNAGHFDALVTRLAGALADWAAYNSTLRYAAGVMASSDGFPSTTGYMVHNIYGLVQCAPDLAPPACRACLQALIVDMPQAFGGRIGGQFNAVWCNLRYETSVFYDGDPAVRLVASPSLEGPNINGSTTLIIGELFNTTRPDNQISSIPVVLSSDYSEITAHLHFTAGNRRRRPNAATVVVSVLAAVIIALLSVLSIYLWRKLQAKQCECVFLIIRSIFCSKLTTNEIANGRPLTLCLTMNYFVTR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.206071 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0327000 | SBH | 0.0 | 0.130200 | 0.310305 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g17960 | SBH | 0.0 | 0.082427 | 0.075187 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0329900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0006760 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0006610 | RBH | 0.0 | 0.0 | 0.293425 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0006460 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0006900 | RBH | 0.114216 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0006600 | RBH | 0.0 | 0.0 | 0.520845 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0165400 | RBH | 0.655131 | 4.377444 | 0.021037 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0006790 | RBH | 0.0 | 0.0 | 0.044151 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0177000 | RBH | 0.4500465 | 2.3859795 | 0.049864 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0006550 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0006590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0006830 | RBH | 0.0 | 2.908442 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0006480 | RBH | 0.000000 | 0.0 | 0.105697 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0006910 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G006720 | RBH | 0.172078 | 0.0 | 0.162921 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0006840 | RBH | 0.000000 | 1.045922 | 0.748213 |
