Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0208900 | OGI:06027190 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:7738227-7740738 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAACATAAATAATGGTTTATTTGAAAAACATCGCCCATCACAACTCAAAGTAAAGTACAGTGCACAAACTACCAGGTGCCACCAGATGACTGTCCAGTACCACCAGTGCGTATAAATTCCAAGCGCCTAGCGGCGTCCTTGAGTCGAACAAAGCATTTGCAGGTGAATGGGTCACGGAATAGCGCACAAGCAGCATACCACACACTTCCTCCAATTTCATGGCCATCATTTTCCACCAACTCCATGCACGCATCAAGGCCCATAGACTTCTCTGCTTCCATCTGAGCAACACGACTCTGGTAGCTCTGCTCTCGGATGTCCGCAATCCTCTCCAAAGCCAGTCCAGCGGAGTCGCTTCGTGACTTCTTGGAAGAACTCCCTGAGGCAGTAGTGTTTGCTGCTGGCCTCTTTCCCTTGCCCCGGTCTGCTGCCGTTGGGGGTGGAGTTGGAGGTGGTGGTCTATAAGCAGCAGCGAGCTGCGCCATGTCGATGGTCTGCCACTGAACTGCTCCTTGCGGTGCCTGTGGGGCTGCCCCTGCGACGGCGGAGTGGTTTCCGACAACTGTGTGCCCACTGAATACCGCGTGGTGAAGGTCAATGTGCTTCAGAGGATCATTCCTGAAGCTTAAGACACCTTTATTTTGCTGCAACATAAGTAGACAGTAAAAATAAGTTAGTACAAGGCAAGTGCATTAGGCTTGTGCAAACATTGAACATAATGAATATGTGCAGTCCAATGTGCATTACTACTAAAATGCTGGCAGTAAATGTGCACATTGGTACCAAGTTATCAAATATAATCAGGAGTACATGTTACAATGGGCCACACATCTGACAGAATGAAAGAAAGATAGTTTGAACATTGTAAACATAAGATAAACTGCATATATTATATTCTTTGTAGATGAGCACATTTTTGTTCATTCTCTCTATATACATCACAAAGAAGGTGTGTACAGCTAGTTGAATATGTATTAACATGTTCCTAAATGACTTGTACAAGATCTTTCCTAATTTACTGATACACTACATATACACTACATATAGATCTTTCCTAAACATCATTTTGTTAACTTAAATACAAGGGAATGGCACACATTACTAAAAACGACATGACAGTAACAACTATGAAACATATGTGATCACAATCCTTCCATTTTACTGCAGCTAGTCATTTGTTGGCACACACAATTTGAACAAAAAAATTATTACACCTCACAAAACTGTATTTATAATTGCATGCATGTACTAAATTTCAGATAATACCAATTGTAGGCAAAATTGTTGGTTCAAAATATTTATGGTCAAGTGTACGTACCGCATTCTTGCTTTCCCACCACTCATCATCGGCAACAATGGCTGATGTATGGGGATCACGACCCAGCCCGCTTGCATGCGATTCTAGCCACACCCACCTGTTGTACCGCTTCTTACACTGCCCCCAAATGTACTCCAATTGAGCCTTGTTCACCTTCTTCTTGCACTTGGTGTACATCTTGTGTATTAGGTTCTGCCATGCCTGCGGCTTGGGGGAGTTGGAGGTGATGGTGAACGCTGCCATCTCCTCCAAGCAGCTCTCAAGAAACACACGAACCTCCATATCGGTCCACCGGCTACGGCCATCGCCCATCTACTCCGTGCAAGTCAAATAAAATTGAATCGGAAATGAACAAATTAATACAAACAAATACCTTAGATGACTCTTCCTCGCGGACGACGTCCCAATCAATCGAACGGCCGACGGTGGCAGGGCTCACTCTTCGAACAAAGTCGATGACGGCTCTAGGAGACTTGGCGCAAACTTTGCAGAGGGCATGCGCGATATGAAGCACGTCGTCGGGAGCAGCCTTGGCGCTGCCAGCGTCGGAGGTGACAGAGTCGGAGGAGTCCTCGCCGGACTCCAGATCGGCGCCGCGGACAGAGATCTCCCCTGTTTGAGGGGATTGAACAATCGTCCCCTCCTCTTGGATCGACAATAGATCCCGCTCTCGCTTCCGCTTCTTCGCTGTCGTCTCCATCGGACCACGCACACGCTCGGCCTGAAATAGAGACTCCTCAACTCCGCCAGCTTGGATGCCTTGATGAGACTCTTCAGGCCAGCACTGTCTGACCCGAGAGGCAGAGAGGACGAGCACACAGGCAGCCAGACTGCTTGCTGCTTCACAGCGAGCACGCCGGCCAGCTTTTACTCCCCTCGAGGACGACGCAGACAGCTCGACAGGCGTGGAGCTCTTCCACTTCCCCCCGATTTTGAGCACCTTGAACCGACCGCTGCCGCAAGACGACGCGCGGACGAGAATCGATTGGGGGGGGGGGCACGGGCCTGCAAGCCACAGTCGAAAGGGGAGGACGGGAGCCTGCAGCGGAGGGGAAGAAAGAGGGATTCTCCGCCAGGCCTGCGTCGCATCGACGACCGCGGAAGCAACAGCGAGAGGAGGAAGAAAGAGGGATCGAGAGCATTGGATGCCCTGACTCTGACGGAAAAGCCGAGGCGCAACGGCAACTTCTCACA
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| CDS seq | GAAGTTGCCGTTGCGCCTCGGCTTTTCCGTCAGAGTCAGGGCATCCAATGCTCTCGATCCCTCTTTCTTCCTCCTCTCGCTGTTGCTTCCGCGGTCGTCGATGCGACGCAGGCCTGGCGGAGAATCCCTCTTTCTTCCCCTCCGCTGCAGGCTCCCGTCCTCCCCTTTCGACTGTGGCTTGCAGGCCCGTGCCCCCCCCCCCAATCGATTCTCGTCCGCGCGTCGTCTTGCGGCAGCGGTCGGTTCAAGGTGCTCAAAATCGGGGGGAAGTGGAAGAGCTCCACGCCTGTCGAGCTGTCTGCGTCGTCCTCGAGGGGAGTAAAAGCTGGCCGGCGTGCTCGCTGTGAAGCAGCAAGCAGTCTGGCTGCCTGTGTGCTCGTCCTCTCTGCCTCTCGGGTCAGACAGTGCTGGCCTGAAGAGTCTCATCAAGGCATCCAAGCTGGCGGAGTTGAGGAGTCTCTATTTCAGGCCGAGCGTGTGCGTGGTCCGATGGAGACGACAGCGAAGAAGCGGAAGCGAGAGCGGGATCTATTGTCGATCCAAGAGGAGGGGACGATTGTTCAATCCCCTCAAACAGGGGAGATCTCTGTCCGCGGCGCCGATCTGGAGTCCGGCGAGGACTCCTCCGACTCTGTCACCTCCGACGCTGGCAGCGCCAAGGCTGCTCCCGACGACGTGCTTCATATCGCGCATGCCCTCTGCAAAGTTTGCGCCAAGTCTCCTAGAGCCGTCATCGACTTTGTTCGAAGAGTGAGCCCTGCCACCGTCGGCCGTTCGATTGATTGGGACGTCGTCCGCGAGGAAGAGTCATCTAAGGTATTTGTTTGTATTAATTTGTTCATTTCCGATTCAATTTTATTTGACTTGCACGGAGTAGATGGGCGATGGCCGTAG
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| Protein seq | EVAVAPRLFRQSQGIQCSRSLFLPPLAVASAVVDATQAWRRIPLSSPPLQAPVLPFRLWLAGPCPPPQSILVRASSCGSGRFKVLKIGGKWKSSTPVELSASSSRGVKAGRRARCEAASSLAACVLVLSASRVRQCWPEESHQGIQAGGVEESLFQAERVRGPMETTAKKRKRERDLLSIQEEGTIVQSPQTGEISVRGADLESGEDSSDSVTSDAGSAKAAPDDVLHIAHALCKVCAKSPRAVIDFVRRVSPATVGRSIDWDVVREEESSKVFVCINLFISDSILFDLHGVDGRWP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0208900 | OsNip_10t0208900-00 | Chr10 | 7738227 | 7740738 | - | RAP2018-11-26 | ||
| CDS seq | GAAGTTGCCGTTGCGCCTCGGCTTTTCCGTCAGAGTCAGGGCATCCAATGCTCTCGATCCCTCTTTCTTCCTCCTCTCGCTGTTGCTTCCGCGGTCGTCGATGCGACGCAGGCCTGGCGGAGAATCCCTCTTTCTTCCCCTCCGCTGCAGGCTCCCGTCCTCCCCTTTCGACTGTGGCTTGCAGGCCCGTGCCCCCCCCCCCAATCGATTCTCGTCCGCGCGTCGTCTTGCGGCAGCGGTCGGTTCAAGGTGCTCAAAATCGGGGGGAAGTGGAAGAGCTCCACGCCTGTCGAGCTGTCTGCGTCGTCCTCGAGGGGAGTAAAAGCTGGCCGGCGTGCTCGCTGTGAAGCAGCAAGCAGTCTGGCTGCCTGTGTGCTCGTCCTCTCTGCCTCTCGGGTCAGACAGTGCTGGCCTGAAGAGTCTCATCAAGGCATCCAAGCTGGCGGAGTTGAGGAGTCTCTATTTCAGGCCGAGCGTGTGCGTGGTCCGATGGAGACGACAGCGAAGAAGCGGAAGCGAGAGCGGGATCTATTGTCGATCCAAGAGGAGGGGACGATTGTTCAATCCCCTCAAACAGGGGAGATCTCTGTCCGCGGCGCCGATCTGGAGTCCGGCGAGGACTCCTCCGACTCTGTCACCTCCGACGCTGGCAGCGCCAAGGCTGCTCCCGACGACGTGCTTCATATCGCGCATGCCCTCTGCAAAGTTTGCGCCAAGTCTCCTAGAGCCGTCATCGACTTTGTTCGAAGAGTGAGCCCTGCCACCGTCGGCCGTTCGATTGATTGGGACGTCGTCCGCGAGGAAGAGTCATCTAAGGTATTTGTTTGTATTAATTTGTTCATTTCCGATTCAATTTTATTTGACTTGCACGGAGTAGATGGGCGATGGCCGTAG
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| Protein seq | EVAVAPRLFRQSQGIQCSRSLFLPPLAVASAVVDATQAWRRIPLSSPPLQAPVLPFRLWLAGPCPPPQSILVRASSCGSGRFKVLKIGGKWKSSTPVELSASSSRGVKAGRRARCEAASSLAACVLVLSASRVRQCWPEESHQGIQAGGVEESLFQAERVRGPMETTAKKRKRERDLLSIQEEGTIVQSPQTGEISVRGADLESGEDSSDSVTSDAGSAKAAPDDVLHIAHALCKVCAKSPRAVIDFVRRVSPATVGRSIDWDVVREEESSKVFVCINLFISDSILFDLHGVDGRWP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0215100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g14290 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0208900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0011510 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005740 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017740 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0030100 | SBH | 0 | 0.2161295 | 0.009132 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0004950 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001090 | SBH | 0.069817 | 2.611383 | 0.604130 |
