Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0199500 | OGI:10023580 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:6946834-6953446 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGTTGGCCGTGCGGGCGCACCAGATGGACATCGACGGCGCGGGCACTAAGGCGGCAGCAGCGGGATGGAAGGCGCCGGCGTCGATGGTGCTGGTGCAGCTGTTCATCACGGGGATGATCATGCTTTCCAAGGTGTCCATCGGCGGCGGCATGTTCATCTTCGCTCTGCTCGCGTATCGCAGCCTCTTCGGCGCCGTCTTCATCCTCCCCTTTGCCCTCATCTTTGAGAGGTTTCTTGTTTCCTACTCTTATTCGCATGCAGGCCAGAAGAACATTATTGCACTAAACTAGTGATGGGGGGTTAATTTAGGGCTCATCTACGGCATTTAGATGGCCATATATATAGTAGTTTTTAACTTAAATTGGAAGTATTTTAGTTTTCGTGCAACCAAAAACAGCGTTTTTCTAGTCTAGTTGAAATTGTGAATCATTGGATGCTATGGATAACGCCATGCGTAAACTTGTGGCTCAATGATGGATAGGTATCGCCAGCAGGTATCATTAGCAGTCTGTAGGATATGCATGCACTGTAAAAAAACAGGTGCCGTGATGAAAATATAGATTCTATTTTTGCTAAACTTTGTTTTGTGTAGAGGGAAGTGGAGGGACATGGATTGGCGCGCATTCGGATGGATCTTCTTCAATGCCTTTATCGGGTACGCATATATGTTTCTGAATCTGAAGCTTCAAATTACTGTCAAGTTTCCATTATTTATACATCCTCCGAATAAAAATGTACTCGGTTTTAACAAAATATACTAGATCATATACTAGTATTTTGGAGAACCTCAATGACCAAGGAACGAGCGGCCTGAGTTTAACAAAAATACCCATGATGTATTACTCATGCATGCATTTATCAATATACCTAATGTTACTGTAGGCATACGTCGCATATACGTAATCCAGGGCTACTATTTGGGATTTTAGAGGTAAACATCACATAAATATAAGTGCTTCCTATACTATATGTGTGTCCTTTTAAAAGACCCTTAGAACTATACTCCCTGTTCGACAATACCTATTATTTTGGACAATGACATGATTCTCGAAACATAGTTTGTTTGGGATTTTCTATTGTAGTGCACACAATAAATAAATATTTGATTTTGTTAAAATATTTTTAAGACTAATCTATATATTGTTCTATTGCCTTCAAAATGAATATTCAAATGTTATTGATACTCAAAATTCTATACCTCAAAAACACCAAAATAACACACAAAAAGAAATATCTATCGGTTCTTTTGAACTCAGAATATGGAAACTACACTACTAGACAAAAAATTTTGGTGACTGCCCCACACTCTTGTTATGGTCATGCTGAATAGTCATGAAAAACACTCTCTCGCCACACAAGTGTGTCACAGCATCACAAAATTTAGTTGTTCGGTGACTGAATGGATTATGTAGTCACAAAAGTTTACATGAAAATTATTTAGTTAGGTTTAAAAGTATTATTTATAATATTGGTGACGGTTATATTTCAAAGCTGTCACCGTTGATCCCGTAACTGATTTAATTGTGACAGGCTGAAAAGAAAAAAAAGAAAATACCAGAGAGAAATAGATTATTAGCTTATTTAGAAGAGTTCAGCTCTGTTTCTCTCTCCACCTCCTCATTCCTCTCGTTCCCCTCCTCTGCTCTCTATTCTTATCCTAGAGAGGATTCGATCTCCCCTTACAGCGATGCTTGTCACTGGCCGCGTCAACCGTTGAGCCGCCGCGTGTTCTCCTCATCCGCGTGCTATTAGATAAAAAATGAATTGATTGGCCAAATATGTATGGCAAACCAAAGTAGCTGTATCAACCGCTGAATTGAAAAATCAAGATTATAACAAAATACCAACTGAAACTATGGGTTGTCTTGTTCCATACTAAAACCAAAACCAGAGTTTGTTATAGCATTAAAGAAGGTGACGATAGCGAATGTTTTGCTAGTAGTACAACTTGTATTTTGATATGCTTGCGCATACAAAAAGAATTCGTAACGAAAGGCTGTCAGTCTGTCTATCTCTCTTTCTTAATTATATTATAGTTTAATATATAATTTGTTTTTCATTTATTTTAATATTTGGTAGTATGCATGTCTCCTCTCGTTATGAGTATATAAGAATATTTCGAATGAATGAAAACGAACAAAAGCACTGCATGATAAATAACAGAAACTTAGCACATCGCGGCCCAAACGAAAATGAGAAACTTTATGAGCTTGGCATTCCGATATAGTGCCAGTGACCTCTTGGTTTCATTTCAGTTGTGTCCTTTCTAAAGTCTGTGATGGACACGATACTGCCCTCAGTTTCCATCAATTCCCATTGTATGCATTCGGCCTCTTGCACATCTTGTCACATTCTTCCAGAACAATTGTTTAAAATGATAAGCATACATTTTAATTTAAAGAAGGTTAAAGATATTCTTGATTCGATATACATGCTCCGATATTCGTTTCAAAAAAAAAATCGTTTCAAAAAAAGATATACATGCTCCGATATTTCTTTCAAAATAGGTTTGGCAAAGCATAGAACTAAATATACATTTTTTAAAAAATTAAAATGTTCAAACTTACACCTCTTCACTTTGGTGTCTGTGTAGTCTGTAACTCTGTATGAATAATAAGTCAACTTAAGATTTTACGGAAGCACTTAATTTGTTAGGAGGATTGCTTCAACGGCAAAAATGAAGCTACTAGATCCATCCAATAGCTTTGCTGGAAGATATCTTTTGCACAAACCTCGTTGAGATCTTCACCAGAAATTATGAAATCATGATATGTTCAGTTGATTACCATATAATAGTAATTAACTTAATTCTATAGGGATACAAATGGGACCCGGATCCATTGTCTTTAGGCGCTAAAGGCAGAGATGCTGTCTAGCACTACAAAAGAAAACAGTGATTTGTATTTATTCACTGTAGCAACAGCGTAGAGCAGGAAACTGAACTGTACCATGCTACTGTTTATTTTGTACATCGATCTTGCTGGTTCACTCCAAAGTCATGGTACTAATACACATCTGATTTCACCTTGCGATATATATATTTGTCTGTTCACTGTTCAGAGACGCTGCGACAAAGAATCTTTGCTCTAATAAGATACTCACTCTGTCCCATATAAAATCAAACCCTAGCATCTCAATGTAAAATTAGGAGAGAGGGAAAATGACCAAAATACCTCTTATTATTAAAAAAATAGTAATGATGATAGGATGATAAAGGGTATTGGAGAAATTAAATTTCTCATTTTACGTGCTGATAGTAGATAGGATGGTAGAAGTTGGTTTTTCGTGGGATAAAATTCAAACTCCAGAGGTTGATTTTTTTTTTTTTTGGGACGGAGTGAATAGAAATTTACTGATGGCAAAGCCAATTTGGTGAAAGACTGTTACATATATAGGAGAACCAATTTGACAGTACGTGATCAATAATCACTTTAGTGTTGACCAGTTCTAATTAATTATCTGAGACATGGTTTTCATCTTTCTTCTCACATATCAAACTATGCAGGTATGCAGTTCCAATGAGCCTTTACTTCTATGGGCTCAAGGACACCACTGCATCCTACGCAGTCATCTTTATAAACATCATTCCCCTATTCGCCTTCATCCTCTCACTCATGTTCAGGTAAAGGTTCCATTTGCAAGGTTCCATTCGCCTTCTTTGTTGTGTACAATGTATTTCAATACTTATAGGTTCCAACAATAATTGTTAATAGATTTTATTACTTGAGAAAGTATCTTTAGTTATCAAAAATTTAAACTAAAAGTTTTGGTACCTTAGGGTACAGGGTTCCTAGTATCTCGGGCTTAGATATTAAGTTTTACAGTAGAAAACATAATATCAACCAGTATCTTCTTAACAATGGTAAAATTAGCTATAATTATTTCATGGAATGAAAGTAATGCACTTGATAGTACCATGGCAAGCAGTGTGTGATTTCAATCCTCATGTCCCGTGTTCAATCTCCAGCATGCTTACAATTTCTCTTAAGAAATATTTGGAGGGACGTATCTCCCTCCAAATCTCGTTTTTAATTTCATGGAATGAAAAAAGATGACCATTTTTGGGTAAACTCGAATGGTGTTGCAAATATATGATCTCACTGAATCATATGGATATGCTGTATCAACATATGGCAGACTGGAGACATTCGAAATTGGAAGCATAGTTGGGGTACTGAAGATAGTGGGTGTTCTGCTCTCTGTGGGTGGCACAATGCTTGTCAGCTTATACAAAGGCAAGTCACTGCATCTCTGGAATTCCATTTTGCAGCACCAAAATGAACCGGCCACAAAAACTGCAACCAATCAGCTAAGAGGGACAATTTTATTGGTTGCCAGCAGCTTTGCCTATGCTTGCTGGTACCTTGTTCAGGTAATCACGAGCAATTTTACAGTTCTTAGGAGATACCACTTTTTCTATTGCAAATTTGGTACCTCTTAGTACCTAAATACTATGAGATACAAAAATTTACACTAAATTTTTGGTACCTCCTCAAGAACTATAAAATTGCTCTAATCACAAACTTACCTTTTAATAGAAACATATATACTAGAATAATCTTATGCTGATATTTCCATGTTGTAACTGTATTTGCAGTCAAAAGTTCTGAAAGTGTACCCATACAAATATTGGTCTTCCATGATAACATGCTTGGTTGGAGGATTTCAGGTAGCATTTGTCGGAATCATATTAAGGAGACATAAGAGTGCTTGGAAGCTAGGATGGGATCTCAACCTTGTTACTGTTGTGTACTCAGTATGTCTTCAAACCTTCCTAGTTCTTGAAATTAACTTAACTAGAAGCTACAATGAGAAAAGTATAATATTTTGTTTCCTATTCTTGGGGTGTCCAGTGTAGCTTGAGTTGTAGTATTAACTAATAGTCCTGGAGTTATAATATGATTTTGAAGGAATAATGAATTTTCATGAAACACAATAGGCCTAATTGTTCTACGGATATTGACATCAAAACCACTTTGGTGTAGGGTGCACTTGCAACGGGCGGGAAATATAGCCTTAATTCATGGGTAGTGGCTAAGCGAGGTCCAGCCTATCCCCCGATGTTCAACCCACTATCAGTGGTCTTCACTGTTGTGCTGGACTCCGTCCTTATGGGGGATGATGTGACAGTAGGAAGGTCAGTTGCAATCATTTGTACTATCTATGATGCATGTTCGGTATTTCCAACAGAAAATGCATGTCAACCCATTATCAGTGGTCTTGCTAAGCCGAATTTGCATGACACCCAATTTTACATACGCCGTGTTTAGTTTCAAAATAATTCTTCAAACTTCCAACTTTTTCATCACATCAAAACTTTCCTACACACAAACTTCCAACTTTTTCATCACATCGTTCCAATTTCAACCAAACTTCCAATTTTGGTGTGAACTAAACACAGCCGTAGCCTAAAAACACATTCCAAAGTGGCATGCATATTTCTGACAGTAATGGATAATTATCTACGGTGAACAACCACCATTACACAAATGGGCAACAGTGAACGGTATTGACCAGGCACTAACCAAGCGGCATATCATTGCCAAAAGAAAAGGCTCGAAAAATGATCATATTTTACCTGATATATATTGGGTTTGGAAGTCTTGATGTTTTATCTGATATGTTCGGCATTTGAATCTGAATATCTCTCTCCACGCATGGCTTACGTAGCATCTTACTTCTATCTAAGCATAGCTTTTTTGGCATCTAAGGAAACACATGTTTTCTTTTAACTCTAATAGTTCAAAAATTCAAATGCATATTTGAGCCTCTATATAACTTCAAACAAAAAATTAATCAGATGTATAGTAGATATAAACAAATTATACAGTTTTGACATAAAAATTATCTCCAACCGAAATTAAAATTTTAAAAATGGTTTTGTTTTTCATAGAAGATCTCAACACTTCTAACATATATCTTGGCATGTAAAAGATCTACAATAAAAAGATCATAAATTACAAGGTTATATATCTCAGCAAATTCTACGATTTCGATCTAAAGCTTGTCTTCATCCAACTTCTCCATTTTTAAAAAGAAAATTCATTATGATGCTTCCGTACTTAGTGGAGAGGATGGTTCAGTCATTGGGCAGGACGACTGTATGCTCTATTATGTAACAGAACTAGCGATGATATATTAGTGCTGGTTCATAACAAGAACCTAGTAGTATTACGGCCAGATATAAAGGAACAGGCCGTGATGGGATTGTTACAAAGGTCATTTCTGTAGTACTGAACAACAAAAAGAAACAAGTGACGAAGCTGGTCATGTGAGCAGTACTTTAATATTCGACCATAACATTTGATTTAGTTGCTCTCTTATTTTGAATGTGCAGTATCATAGGCACAGCAATGGTGATTGTTGGGCTCTATCTTTTTCTCTGGGCCAAAGCATGAGAAGTACCTAGGCAGTAAACATATAGTGTAGATTCCACATAAGTTCTTGAAGATACAGAATACACTGGAGTTGTATATGTAGACAATGAGATGTATATTTATATAGCAGTAATTTAAATGCAAAAACAATATACTGGAGGACGAGTGCTTAATTACTTATACTGTTTGTTTGTTTGTTGCTGAAGAATTAATGCTACTGCAATATTATATTATAC
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| CDS seq | ATGGACATCGACGGCGCGGGCACTAAGGCGGCAGCAGCGGGATGGAAGGCGCCGGCGTCGATGGTGCTGGTGCAGCTGTTCATCACGGGGATGATCATGCTTTCCAAGGTGTCCATCGGCGGCGGCATGTTCATCTTCGCTCTGCTCGCGTATCGCAGCCTCTTCGGCGCCGTCTTCATCCTCCCCTTTGCCCTCATCTTTGAGAGAGGGAAGTGGAGGGACATGGATTGGCGCGCATTCGGATGGATCTTCTTCAATGCCTTTATCGGGTATGCAGTTCCAATGAGCCTTTACTTCTATGGGCTCAAGGACACCACTGCATCCTACGCAGTCATCTTTATAAACATCATTCCCCTATTCGCCTTCATCCTCTCACTCATGTTCAGACTGGAGACATTCGAAATTGGAAGCATAGTTGGGGTACTGAAGATAGTGGGTGTTCTGCTCTCTGTGGGTGGCACAATGCTTGTCAGCTTATACAAAGGCAAGTCACTGCATCTCTGGAATTCCATTTTGCAGCACCAAAATGAACCGGCCACAAAAACTGCAACCAATCAGCTAAGAGGGACAATTTTATTGGTTGCCAGCAGCTTTGCCTATGCTTGCTGGTACCTTGTTCAGGTAATCACGAGCAATTTTACAGTTCTTAGGAGATACCACTTTTTCTATTGCAAATTTGGTACCTCTTAG
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| Protein seq | MDIDGAGTKAAAAGWKAPASMVLVQLFITGMIMLSKVSIGGGMFIFALLAYRSLFGAVFILPFALIFERGKWRDMDWRAFGWIFFNAFIGYAVPMSLYFYGLKDTTASYAVIFINIIPLFAFILSLMFRLETFEIGSIVGVLKIVGVLLSVGGTMLVSLYKGKSLHLWNSILQHQNEPATKTATNQLRGTILLVASSFAYACWYLVQVITSNFTVLRRYHFFYCKFGTS |
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| Function | WAT1-related protein At1g25270 [UniProtKB/Swiss-Prot:Q4PT23] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0199500 | OsNip_10t0199500-01 | Chr10 | 6946843 | 6953361 | + | RAP2018-11-26 | ||
| CDS seq | ATGGACATCGACGGCGCGGGCACTAAGGCGGCAGCAGCGGGATGGAAGGCGCCGGCGTCGATGGTGCTGGTGCAGCTGTTCATCACGGGGATGATCATGCTTTCCAAGGTGTCCATCGGCGGCGGCATGTTCATCTTCGCTCTGCTCGCGTATCGCAGCCTCTTCGGCGCCGTCTTCATCCTCCCCTTTGCCCTCATCTTTGAGAGAGGGAAGTGGAGGGACATGGATTGGCGCGCATTCGGATGGATCTTCTTCAATGCCTTTATCGGGTATGCAGTTCCAATGAGCCTTTACTTCTATGGGCTCAAGGACACCACTGCATCCTACGCAGTCATCTTTATAAACATCATTCCCCTATTCGCCTTCATCCTCTCACTCATGTTCAGACTGGAGACATTCGAAATTGGAAGCATAGTTGGGGTACTGAAGATAGTGGGTGTTCTGCTCTCTGTGGGTGGCACAATGCTTGTCAGCTTATACAAAGGCAAGTCACTGCATCTCTGGAATTCCATTTTGCAGCACCAAAATGAACCGGCCACAAAAACTGCAACCAATCAGCTAAGAGGGACAATTTTATTGGTTGCCAGCAGCTTTGCCTATGCTTGCTGGTACCTTGTTCAGGTAATCACGAGCAATTTTACAGTTCTTAGGAGATACCACTTTTTCTATTGCAAATTTGGTACCTCTTAG
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| Protein seq | MDIDGAGTKAAAAGWKAPASMVLVQLFITGMIMLSKVSIGGGMFIFALLAYRSLFGAVFILPFALIFERGKWRDMDWRAFGWIFFNAFIGYAVPMSLYFYGLKDTTASYAVIFINIIPLFAFILSLMFRLETFEIGSIVGVLKIVGVLLSVGGTMLVSLYKGKSLHLWNSILQHQNEPATKTATNQLRGTILLVASSFAYACWYLVQVITSNFTVLRRYHFFYCKFGTS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0199500 | OsNip_10t0199500-02 | Chr10 | 6946834 | 6953446 | + | IsoSeq | ||
| CDS seq | ATGGATCTTCTTCAATGCCTTTATCGGGTATGCAGTTCCAATGAGCCTTTACTTCTATGGGCTCAAGGACACCACTGCATCCTACGCAGTCATCTTTATAAACATCATTCCCCTATTCGCCTTCATCCTCTCACTCATGTTCAGACTGGAGACATTCGAAATTGGAAGCATAGTTGGGGTACTGAAGATAGTGGGTGTTCTGCTCTCTGTGGGTGGCACAATGCTTGTCAGCTTATACAAAGGCAAGTCACTGCATCTCTGGAATTCCATTTTGCAGCACCA
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| Protein seq | MDLLQCLYRVCSSNEPLLLWAQGHHCILRSHLYKHHSPIRLHPLTHVQTGDIRNWKHSWGTEDSGCSALCGWHNACQLIQRQVTASLEFHFAAP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr10 | 6950971 | 6951589 | + | OsNip_10t0199500-01 | OsNip_10t0199500-02,OsNip_10t0199500-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g12500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0199500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0005520 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005360 | RBH | 0.0 | 0.991453 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0005320 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0005660 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0005350 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0120500 | RBH | 0.0415365 | 14.2514235 | 0.048654 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0005550 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0126300 | RBH | 0.0631075 | 11.0698445 | 0.026784 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0005420 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0005480 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0005590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0005330 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0005690 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G005560 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0005580 | RBH | 0.0 | 13.715843 | 0.0 |
