Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0154700 | OGI:10011940 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:3438474-3439397 | ||||||||
| Gene Symbol | CYP18-4, OsCYP18-4, OsCYP-26, OsCYP18-3 | ||||||||||
| DNA seq | AAGTCTCAAACCAAGAGACAACAAGTCACAATTTCTCATAGACAAGTAGCTATCTATCTCTATCTAGCAAGCTAGCTAGGTTGCTTGCATTCTCTCCTCTCTCTCTTCCTGTGTCACCAATGGCGCCGGCGGCGTCCTCCAAGTCCAACCCAAGGGTGTTCCTTGACATCGCCATCGGCGGCGAGTGGGTTGGCCGCGTGGTGATCGAGCTGCTCGCCGACAAGGTGCCCGACACGGCGGAGAACTTCCGGCGGCTGTGCACCGGCGAGCGCGCCGGGCGCTCCGGCAAGAGCAGGCTCCACTACAAGGGGTCGGCGTTCCACCGCGTGGTGCCCGGGTTCATGTGCCAGGGCGGCGACATCACGGCCGGGAACGGCACCGGCGGCGAGTCGGCGCTGGACGGCGCCGCGAGGCACTTCCCCGACGAGGGGTTCGCGGTGAAGCACGACGGGCCCGGGGTGGTGTCCATGGCGAACGCCGGGCCCAACACCAACGGCTCCCAGTTCTTCATCACCGTCGACAAGGCGCCGTGGCTGGACGGCCGCCACGTCGCGTTCGGCCGCGTCGTCGCCGGGATGGGCGCCGTCCGCGCCATCGACAGGACGGGAACCTGGAGCGGCAAGACGGTGAAGCCCGTCGTCATCACCGACTGCGGCGTGCTCTAGAAATACATATACATACGTATATATGCCAGTGTATACCGTATACGTACGTGTACCGGTGTACGTACGTATGCTGTACGGTTCGGTATACATTAAAATTGTGTCTACTCTAGCTACTGTGTGATGAGCGTATGAGAGTGTTAGCTGATGTAATTTTTTGAGGTTGCGACATGGTGGTTACAAACTATCGAGGACGTTAGCTGCCTCACTGATGGTGACTTAATCTAGCTACCAGATAATAAAATTGAGTGATTGAGCACAT
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| CDS seq | ATGGCGCCGGCGGCGTCCTCCAAGTCCAACCCAAGGGTGTTCCTTGACATCGCCATCGGCGGCGAGTGGGTTGGCCGCGTGGTGATCGAGCTGCTCGCCGACAAGGTGCCCGACACGGCGGAGAACTTCCGGCGGCTGTGCACCGGCGAGCGCGCCGGGCGCTCCGGCAAGAGCAGGCTCCACTACAAGGGGTCGGCGTTCCACCGCGTGGTGCCCGGGTTCATGTGCCAGGGCGGCGACATCACGGCCGGGAACGGCACCGGCGGCGAGTCGGCGCTGGACGGCGCCGCGAGGCACTTCCCCGACGAGGGGTTCGCGGTGAAGCACGACGGGCCCGGGGTGGTGTCCATGGCGAACGCCGGGCCCAACACCAACGGCTCCCAGTTCTTCATCACCGTCGACAAGGCGCCGTGGCTGGACGGCCGCCACGTCGCGTTCGGCCGCGTCGTCGCCGGGATGGGCGCCGTCCGCGCCATCGACAGGACGGGAACCTGGAGCGGCAAGACGGTGAAGCCCGTCGTCATCACCGACTGCGGCGTGCTCTAG
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| Protein seq | MAPAASSKSNPRVFLDIAIGGEWVGRVVIELLADKVPDTAENFRRLCTGERAGRSGKSRLHYKGSAFHRVVPGFMCQGGDITAGNGTGGESALDGAARHFPDEGFAVKHDGPGVVSMANAGPNTNGSQFFITVDKAPWLDGRHVAFGRVVAGMGAVRAIDRTGTWSGKTVKPVVITDCGVL |
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| Function | Peptidyl-prolyl cis-trans isomerase [UniProtKB/Swiss-Prot:Q39613] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0154700 | OsNip_10t0154700-01 | Chr10 | 3438474 | 3439397 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGCCGGCGGCGTCCTCCAAGTCCAACCCAAGGGTGTTCCTTGACATCGCCATCGGCGGCGAGTGGGTTGGCCGCGTGGTGATCGAGCTGCTCGCCGACAAGGTGCCCGACACGGCGGAGAACTTCCGGCGGCTGTGCACCGGCGAGCGCGCCGGGCGCTCCGGCAAGAGCAGGCTCCACTACAAGGGGTCGGCGTTCCACCGCGTGGTGCCCGGGTTCATGTGCCAGGGCGGCGACATCACGGCCGGGAACGGCACCGGCGGCGAGTCGGCGCTGGACGGCGCCGCGAGGCACTTCCCCGACGAGGGGTTCGCGGTGAAGCACGACGGGCCCGGGGTGGTGTCCATGGCGAACGCCGGGCCCAACACCAACGGCTCCCAGTTCTTCATCACCGTCGACAAGGCGCCGTGGCTGGACGGCCGCCACGTCGCGTTCGGCCGCGTCGTCGCCGGGATGGGCGCCGTCCGCGCCATCGACAGGACGGGAACCTGGAGCGGCAAGACGGTGAAGCCCGTCGTCATCACCGACTGCGGCGTGCTCTAG
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| Protein seq | MAPAASSKSNPRVFLDIAIGGEWVGRVVIELLADKVPDTAENFRRLCTGERAGRSGKSRLHYKGSAFHRVVPGFMCQGGDITAGNGTGGESALDGAARHFPDEGFAVKHDGPGVVSMANAGPNTNGSQFFITVDKAPWLDGRHVAFGRVVAGMGAVRAIDRTGTWSGKTVKPVVITDCGVL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.543353 | 0.541939 | 1.291595 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0154900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g06630 | RBH | 0.988903 | 0.331820 | 0.302673 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0154700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0002880 | RBH | 0.0 | 3.243673 | 0.783939 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0002830 | SBH | 0.0 | 0.0 | 0.347161 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0002770 | RBH | 0.964508 | 0.0 | 0.718889 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0003020 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0002730 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0056300 | RBH | 1.7774765 | 5.992185 | 0.060824 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0002950 | RBH | 0.0 | 0.0 | 0.265614 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0064900 | RBH | 1.9922845 | 1.700221 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0002770 | RBH | 0.624985 | 0.131078 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0002790 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0002860 | RBH | 0.0 | 18.632549 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0002760 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0002980 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G002900 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0002960 | RBH | 0.0 | 0.0 | 3.829443 |
