Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0142900 | OGI:10009590 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:2614802-2618660 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGCTCGCTCGCACGTGCCGCCTCACCTCCTCCCTCCCACGCACCGCCTCACCCTTCTCCTCTCCTCGCATGCGCCGCCGCCGCCGCCGCAGCTCCACGCTCTTCTAGCCATCTTCGCCGCGCCGGAAGATCCAGCCACCCGGACAAGAGTGGTGCTGGCCGTCGCTTCCCCCTTCTCCCCTTTCATCTCCACGCGCCCACCGCTTCCCGCTCCTTCACGCTCTCCACTCCGCTCGGTGCCCGATCTGGTTCGAGGACGGGCGGAGCTAATGGTCTAGGCCTCCCCACCGGTGGATTTGGTTGCCCTCGCTCCGGGCTCTGGCGCCGGGGATGGTGCTCGTGCTCCCTCGACTTCTCCGTGCACCCTTTACCTTATCCTCTGCACGATGCGGTGGCGGCGGGAGGGCGGAGAGAAGCAGCTGTGCCGCATTAGCTCTTCGCTGGTTTCAGAAACTCAACTTGTTCCAGGTATAGTTCCAGGTGTTCCGTGCTCGTCAGGACTGAAAGAGATTACATATCTTATTTGGTGATTCGCAGGTATGATAATCTTTCTCCCACTTTTGTTTTCCTGTCATGACATAGAATTAGTGAAGAGCAAAATAATGCATGGCGGATAAATGATTGCAACTTGCAAGGCAGCATGTTAAACATGCACAGCTCTCTCTTGCCTTGGAAATTCTTGGACTAGGAGATGTGTTTACGGTGCAGTTGACACATGCGTTCAGTTGTCAACACTCCTAAACCCTTCACCTTTCGTCTGGATCAAATGAAGGATTGAAAATATGTGACTTTTCCTATCTTAATTCCATCGGTTGGCTAGCTCCTTCTAGCCAACACATTTTTTTTAAAAAAAAAATTCTTGGACTGGCGTTCCCAGCCTTGAGTACACTGAATCGCATAGAAAGTACTCATCTCATATTTTCATGTCATGTAGCATCAAATCCTCTCTATGACTTTATGGATCTATGGTTTTTGTTTAGGCTTCCTGTTGGTACTTAATTAGAGTTGTTTCTTTCATATTTTACTTCAGATTCAGTCAGGATTGGAAGAGATCTTATGTGATAATTAACAGGTCTGATGACCTTGCTCCCAGTTTTGTTTTTGTGTAATCCGTTAACTGAAAAGTAATGCATGGTGGATGAATTGTTGCAAGAAAGCATGCTAAACACGCACTGTACTGTGCAGAAGTTCTGTAGTGCAGGACATTCCTGCCGCTGGTCGTGTCTTGGACAGCCAGAGCTCTTGAATTCTCAGCCTTAAGTACATTGGATCACATACAGGGTACTCACCTCATGTCATGTATCATCAATCCTCTTTATGGACCTGGAGTCACAGGTGCACCTCATCAGCTTAAGCTCTCAAGGTTGGCCTGCTCCTCATCAGCTTTCTATCTTCTATAGATGCTGTGCATGTTAATTTCGATGGTTTGTCTCGTGCAGGTCTGGCTTCTTGGAGTCTATATGGGCCTCGTGCCATTCTCTCTTTGCACTGAGGCCTGCTGAGTGCCTGGATGCTTATAACATACTCTCTCTCTCTCTCTACTTGTCAACACTGAAATATGTTTTCTCAGGACCTCACGAGCCCCAAGACTATGATCTTAGGAATTCCAATGAATTTTGGGATGAAATTCGCAGGGGACTGGTGGGCCTTTCTGCCCCGACTCAGTTTATGTTAGCCTTTTACTCTTTATACTCATCCTGTTGATTGTGCTGACATGCTTAGCCTCTTCACACCAGGTTGACAAGGATTCTTTAGTGAGGAAGCAGGCTTTGTACATCTTGAGAATATCACTAGACATCTTTCCCTCATCTAAGAATGATGCCGCTCAGCAATGCTCCAGGAAGAGGTCCGCCGCTCTGCCTGTTCAAGACAAACCAAATACTGCAATGACAAAAAGAGAGAGGTGGGCTCAGAAAGAGGCCAGATCCCTTGGCATCGGAGAAACGAGCCAATCAGATGAAAACTGCTCAAGTCGTAAAGACCGGTCGAAAGTTTTCCTGTTACTCTATGAGATGCTTCAGGAGTATGGAACACATTTAGTTGAGGCGGCCTAGACGCACCAGGTCAGTTGGTTCCTATGTGCTCTTTTTTTAAGACCTGTGTACCTGTGTATCTAAGTGTTGTTGGTTGATTTTGTCGACTTGTGTCGATAAGGGTTAGGAGAGGATCTAAACCACCGGTTTCCTTATCCTAACAAGAAACAAACTAAGAGATAAATTCGTTTTTTGTGTGATCGGTACAGAAAACGAATTCTAAACTAATTGAGATAACCCCCGAGCCCCACTAGTGTCGCCTATATAAAGAAAGAGAAGGAAGGAGGCTGTTGACCGAACTCTCTCTCTCTAATCTCAAACCCTAAATTAATCGCCCGATCGATCTAGGCACTGGAAGGGGTTTGTGAGGCATCTCTAGAAGAAGAAGAAAGAAGAACAGCAATGGCTTCAAACACAGGTCATTAGATCAATTATTTTTCCGCATAAATAAGAGGTGATTGTTTGTAAACTAAAGCCTAAGATCCTGTAATTAGAACTCCAACAAGTGTCAACGCAATATATACCAGGAACAGCATTCATAGCACGCAATGAAGTAACCACATGCACGTTCGATTAGATGGGTTGATAAATTTAACTATTATTCCCAGGTAATGCTGCTTTTTTGAGTCCAAACCGATAAATGACTGAAGAATCCTATTTGTTGATGTTAGCCATTCTCAGCTCATATGTTGTGTTATCCTACTTTATTAGTACATTATTTGTTCCCTTTTGGTTCATGCGTTTTGCCTTGGGTTTGATCTTTAGCTACCCCAGCTTGCTTTTGACTAAAGGCTGATGCAAATTTTTGTCCGTGATTATTACCTCCTATCAAATTTTATCCTTGGGCAGGCGTTTCACTATTTATGTTTGCCTCTTCTGAAACATTGAATTTGAAGTTGAAATTCTAAAGGATGCTAGACTGCCACATCAAAAATATTTAGCAATTTTTCGTGCTGATTCTGTGCCCAAACCAAAAGTTGATCATGAGTGCGCTACAAAGGGTGATTATACTTGATTTGTTACCTTGTTCAATACACCTGAGTTGCTCTTACTTCTTTGAAAAGGAAAAAGTGAGATACTAAGAAGAAACTTAGCATCATGAGATTCTTATTCTTGTTTGCACCATTCTCTTCTAAGTTCTAATTCTTTTATACTACTCCTAGGAGTTACATTGAACTTCTCATCCTTACCCTGCTATAGGGTTTGATGTGTGCTCGCATAGTATACTTATAGTGATATATGTGTATCATTGCTAAACAATACCCATACCATGGTGTAATTTCAAAGGTTTGATATAAATCTTGGTTGCCTACTAAATAACTAATATTATTTCTTTATAAAACATTAATAAATCACAACGTCCTTGGTCTTATGTTATTCTAGAGCACAAACACTTTTTTTAGGTTTAGTATGTCACAGGAGCATGGCAAAACCATGGTGATGCGTACCAATAATCATTCCTGTTCCATATATTCTTCTTTTATGTTCATTCTATTTGGTTTGATGTTATGACTGTTCAATCAAGACTGCTTTGTAAAGAAATTATTATGTGAGTTATATTTTCCAACATAGGTATAACCCTTTCATGTTTGCATGACCAGGCAGCCATTCATGCTATTGTGCTTCTTTTGTGGATTGGAATAGGATAAGAAGCTTGCACATGGACTTATAGTGGGTCTGTACTGTCTGAATGGGTTCTTATTACAATTATTTTTCCCCCTCTTTGTGCCTTATGTATATTGGTGCTCTATGAAATAATGTACCATGTAACCGATAAATCATCATTGACATATCAAAGTGCACCTATGTATGCGCTATATTTCTCT
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| CDS seq | ATGTCATGTATCATCAATCCTCTTTATGGACCTGGAGTCACAGGTGCACCTCATCAGCTTAAGCTCTCAAGGTCTGGCTTCTTGGAGTCTATATGGGCCTCGTGCCATTCTCTCTTTGCACTGAGGCCTGCTGAGTGCCTGGATGCTTATAACATACTCTCTCTCTCTCTCTACTTGTCAACACTGAAATATGTTTTCTCAGGACCTCACGAGCCCCAAGACTATGATCTTAGGAATTCCAATGAATTTTGGGATGAAATTCGCAGGGGACTGGTTGACAAGGATTCTTTAGTGAGGAAGCAGGCTTTGTACATCTTGAGAATATCACTAGACATCTTTCCCTCATCTAAGAATGATGCCGCTCAGCAATGCTCCAGGAAGAGGTCCGCCGCTCTGCCTGTTCAAGACAAACCAAATACTGCAATGACAAAAAGAGAGAGGTGGGCTCAGAAAGAGGCCAGATCCCTTGGCATCGGAGAAACGAGCCAATCAGATGAAAACTGCTCAAGTCGTAAAGACCGGTCGAAAGTTTTCCTGTTACTCTATGAGATGCTTCAGGAGTATGGAACACATTTAGTTGAGGCGGCCTAG
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| Protein seq | MSCIINPLYGPGVTGAPHQLKLSRSGFLESIWASCHSLFALRPAECLDAYNILSLSLYLSTLKYVFSGPHEPQDYDLRNSNEFWDEIRRGLVDKDSLVRKQALYILRISLDIFPSSKNDAAQQCSRKRSAALPVQDKPNTAMTKRERWAQKEARSLGIGETSQSDENCSSRKDRSKVFLLLYEMLQEYGTHLVEAA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0142900 | OsNip_10t0142900-01 | Chr10 | 2614802 | 2618660 | + | RAP2018-11-26 | ||
| CDS seq | ATGTCATGTATCATCAATCCTCTTTATGGACCTGGAGTCACAGGTGCACCTCATCAGCTTAAGCTCTCAAGGTCTGGCTTCTTGGAGTCTATATGGGCCTCGTGCCATTCTCTCTTTGCACTGAGGCCTGCTGAGTGCCTGGATGCTTATAACATACTCTCTCTCTCTCTCTACTTGTCAACACTGAAATATGTTTTCTCAGGACCTCACGAGCCCCAAGACTATGATCTTAGGAATTCCAATGAATTTTGGGATGAAATTCGCAGGGGACTGGTTGACAAGGATTCTTTAGTGAGGAAGCAGGCTTTGTACATCTTGAGAATATCACTAGACATCTTTCCCTCATCTAAGAATGATGCCGCTCAGCAATGCTCCAGGAAGAGGTCCGCCGCTCTGCCTGTTCAAGACAAACCAAATACTGCAATGACAAAAAGAGAGAGGTGGGCTCAGAAAGAGGCCAGATCCCTTGGCATCGGAGAAACGAGCCAATCAGATGAAAACTGCTCAAGTCGTAAAGACCGGTCGAAAGTTTTCCTGTTACTCTATGAGATGCTTCAGGAGTATGGAACACATTTAGTTGAGGCGGCCTAG
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| Protein seq | MSCIINPLYGPGVTGAPHQLKLSRSGFLESIWASCHSLFALRPAECLDAYNILSLSLYLSTLKYVFSGPHEPQDYDLRNSNEFWDEIRRGLVDKDSLVRKQALYILRISLDIFPSSKNDAAQQCSRKRSAALPVQDKPNTAMTKRERWAQKEARSLGIGETSQSDENCSSRKDRSKVFLLLYEMLQEYGTHLVEAA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.753008 | 0.918428 | 0.396423 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g05290 | RBH | 0.499747 | 0.606224 | 0.100148 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0142900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0009300 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0009510 | SBH | 0.000000 | 0.000000 | 4.465369 |
