Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0136150 | OGI:10008370 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:2239218-2242139 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAACAATCCAACCTTAGCTTGTCTTCTGCTCCAATGCCTTCAAATGCAGCATCTGCACAGAAGAATTAGATCTTGTGCATAAAAAGAGAGCAACTCACGGAACAGCGAAAGAAGACTAGTATCTGCACAAGATCTACCGATGTATATATTTTTCATCGAATTCTGGACTCCTTGTGGGATCATGTCCATGGGCACCAGCACTGTCTGGAAGCAATGATAACAATAACAAAAATCTTCGCCCACGGCTCTTCAACAATCCAATCCAGCTTGAGTGCTCAGTGCTCACTCGTTTGCTCCAATGACTTCCATTGATACATAAAACATGTGCAAAAAAATTGCAATGAGAAGCGATGACATAGTATACAAAACCCAAAGTCATTCTGAGTTACTATAATGCCAAACAAACAGCCCCGCTAATTTGCAGTAAAACGATTAGATTATTGTCCAGTTCTATGAACAAATCGACTATAACAATACTCAAGGTCCAACTTGTAGGAATCCCACTGGAAAATGTCTTTCAAAACAAGCCAGAGTAAGTTTGATAAAACATAATAGGTTGGGTTACTTAATCTGCCCGCAAAGCATACAATATGCATGTTTCCAACCCATTTTATCCTAACCGATTGATCTGCCAACTGAATCTGGTTACAGAATAACATTAACATGAATATCTGAATTTTCATCTGTGTTTTCTGCGACTCACAGATGTTTCATTCAAACATCTGCCATCCATACAAAAGTTAGTCTCGCTAACTAAAAGTGATGGAAACTAACAAACAGAAAGCAACGAACTTTCATGTATTTTATTTAAACATAGCCAGTTTTACATAATGATTTTATACCTACAGCCGTACATAAAACTATATTTAGTTATAACGTAAAACATTACAGGGCTATATATGCATTAATCTAACAACAAAGTGAACGGAGACCAAGTTAAATTAGTTAGACAACAGTTTAATATCATACTGTAATAAAGGCATTCCAGCAACTAAGTACATGAAAACAACTAGATCTTTTTATGCTAATGTAACATTAAAACGAGGACTACCTGCAGTGTAGAAACTTGTGAAGGGATGACAGCAGGTGATGACATTGCAATCAAAGAGTTTCTTGAACTGCATTGAGTCAACTTGGACCATGTAGAAAGCCATATCCACCACTAAAATAAACGCATTAAGATCCTCAGCATATCCCACAATATCTATTTTCTCTCTCTGCACAGCAGAACTCAGCCCAAGAATGCCATGCAGCTTGACAGTCTTCCGTAGCACCCATTTCGCGGCACCTCCAAGAGTGACCTTCCTCTCCCACATTTGGAATCCGCTGTACGACAGAATGGCAAGGCTGACATTATCATCCTCCCTACGCATGATACAATAGCGGCAATCGCTAGAAAAATTCGTCTCTGGCCAATTGCCATCGGTCACAGCTAGGGTCAACGTTTCGAGATTGAACTCAAGAATGTGATGCCCGGACACAGATAGCAACCAATAGAGGGCATTGCCAACAAGTATGGCAGGTGAACCAAAATGGTAGATGGTGGATACAGGCCCTGTGAAAATGGCATCACCCCATTCGCCGGTCACCAATGAGTAAACGGAGGCAAAGATTCGCCTATCCATCTTGCTGGCGCAGATCAGGACCAAGTTGAAGACCAACTTTAGATGCACTACTGAAATTAGTACAAGGAATGATGTGCAATGGAGCAGTTGGAGAGAAAGCAAAGCTTGCTATGTCTATGCGACGACCTTGTTCAAGTAGTAGCTTTGGATTCTGACCATACAAGGAGATTTTTTTTTTCAGTCAGTGTAATGCACATTTTTAATCTGCCAAGCCAGAAATTGACATCCAAATTCCCTCTCAATGCATCTGCAGTAGCATTTGCTGCGGCAAGTGTCCCTATGAACTGCATCTGCATGGCAATTTTCTTCAGATATTTGTACTAATCGTGGATGGTCCTTAGGGTTCGCACTTCCAAATGCGAGCATTTTGAAGAGGTAGCTCAATTCTTCATCTGAATGGTTGTTAAGAAACATTGGCTTTACAGTTCCAAGTTTCTCTGATTTTCTAAGTCTGCTTATGGTTACCACCTTGCTTCCCTCATTCATTTGTGCCACGGATTTATAGAATTCCTCCCAATTCATCTCATTCACATCTGAAACAAACTCCACAACCATCAAAATGTTCCCTGCCAAGAGAGTATGATTGTGTGCTATTCCCAAAAGATCACCTTCATTCAAATGCAAAATGGAAGAAAACTGTGATTGAACCCTCTCGTCGGCGCATACATGCGCAACCAGAGTTTTCTTCCCAACTCCAAGAGCACCAATGATTGGAAGAACAGCAGGCTGCACACCAGGAGGGTTGTATTCCAATAGGAAATTCAGGAGCCTCTGCTTTTCAGAATGACGGCCAAACATGAAGTTATCTATGTAAAGATAGGTATCATATGGTCTCCTTGACATCCGATCGCATCCACCCAAAAGAACAACAAATTCTGCCATGTGATCAACAGCAGTTTCTAATATTTCCAAAGTTCTGTGCAACTCAAGGTGCCTGGCCTTGTCCTTTCCAGAAGCATCAACAATTTTGCAAAAACGTTTGAGGGGAGGAAATGGGTTGCTAACCTCCTTGATGGGATCCTCCTGAATTAGGGTCCTGCACCTGAACATGTCCAGGACATGGTGGCCTCTGTACATGGCATCAGCAAGTGCCTTCAGCTGCATCAGCATCCCGGAGTTGGTGATGTATCGCCCATCTGCCTCCTCGACAACCATGGAAACTCGTAGGAGAAGCTGCTGCAGTCTTTTCAGCTGCTTCTCCTCTGAGATTTCATGTCTTCTTGAGTACTTGCTCATGAGGTAGGAGATGAACCGGGTGACCAGTTCACCGGTTACTGCTGATACGACATGCTCCAT
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| CDS seq | ATGGAGCATGTCGTATCAGCAGTAACCGGTGAACTGGTCACCCGGTTCATCTCCTACCTCATGAGCAAGTACTCAAGAAGACATGAAATCTCAGAGGAGAAGCAGCTGAAAAGACTGCAGCAGCTTCTCCTACGAGTTTCCATGGTTGTCGAGGAGGCAGATGGGCGATACATCACCAACTCCGGGATGCTGATGCAGCTGAAGGCACTTGCTGATGCCATGTACAGAGGCCACCATGTCCTGGACATGTTCAGGTGCAGGACCCTAATTCAGGAGGATCCCATCAAGGAGGTTAGCAACCCATTTCCTCCCCTCAAACGTTTTTGCAAAATTGTTGATGCTTCTGGAAAGGACAAGGCCAGGCACCTTGAGTTGCACAGAACTTTGGAAATATTAGAAACTGCTGTTGATCACATGGCAGAATTTGTTGTTCTTTTGGGTGGATGCGATCGGATGTCAAGGAGACCATATGATACCTATCTTTACATAGATAACTTCATGTTTGGCCGTCATTCTGAAAAGCAGAGGCTCCTGAATTTCCTATTGGAATACAACCCTCCTGGTGTGCAGCCTGCTGTTCTTCCAATCATTGGTGCTCTTGGAGTTGGGAAGAAAACTCTGGTTGCGCATGTATGCGCCGACGAGAGGGTTCAATCACAGTTTTCTTCCATTTTGCATTTGAATGAAGGTGATCTTTTGGGAATAGCACACAATCATACTCTCTTGGCAGGGAACATTTTGATGGTTGTGGAGTTTGTTTCAGATGTGAATGAGATGAATTGGGAGGAATTCTATAAATCCGTGGCACAAATGAATGAGGGAAGCAAGGTGGTAACCATAAGCAGACTTAGAAAATCAGAGAAACTTGGAACTGTAAAGCCAATGTTTCTTAACAACCATTCAGATGAAGAATTGAGCTACCTCTTCAAAATGCTCGCATTTGGAAGTGCGAACCCTAAGGACCATCCACGATTAGTACAAATATCTGAAGAAAATTGCCATGCAGATGCAGTTCATAGGGACACTTGCCGCAGCAAATGCTACTGCAGATGCATTGAGAGGGAATTTGGATTAGTGCATCTAAAGTTGGTCTTCAACTTGGTCCTGATCTGCGCCAGCAAGATGGATAGGCGAATCTTTGCCTCCGTTTACTCATTGGTGACCGGCGAATGGGGTGATGCCATTTTCACAGGGCCTGTATCCACCATCTACCATTTTGGTTCACCTGCCATACTTGTTGGCAATGCCCTCTATTGGTTGCTATCTGTGTCCGGGCATCACATTCTTGAGTTCAATCTCGAAACGTTGACCCTAGCTGTGACCGATGGCAATTGGCCAGAGACGAATTTTTCTAGCGATTGCCGCTATTGTATCATGCGTAGGGAGGATGATAATGTCAGCCTTGCCATTCTGTCGTACAGCGGATTCCAAATGTGGGAGAGGAAGGTCACTCTTGGAGGTGCCGCGAAATGGGTGCTACGGAAGACTGTCAAGCTGCATGGCATTCTTGGGCTGAGTTCTGCTGTGCAGAGAGAGAAAATAGATATTGTGGGATATGCTGAGGATCTTAATGCGTTTATTTTAGTGGTGGATATGGCTTTCTACATGGTCCAAGTTGACTCAATGCAGTTCAAGAAACTCTTTGATTGCAATGTCATCACCTGCTGTCATCCCTTCACAAGTTTCTACACTGCAGATGCTGCATTTGAAGGCATTGGAGCAGAAGACAAGCTAAGGTTGGATTGTTGA
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| Protein seq | MEHVVSAVTGELVTRFISYLMSKYSRRHEISEEKQLKRLQQLLLRVSMVVEEADGRYITNSGMLMQLKALADAMYRGHHVLDMFRCRTLIQEDPIKEVSNPFPPLKRFCKIVDASGKDKARHLELHRTLEILETAVDHMAEFVVLLGGCDRMSRRPYDTYLYIDNFMFGRHSEKQRLLNFLLEYNPPGVQPAVLPIIGALGVGKKTLVAHVCADERVQSQFSSILHLNEGDLLGIAHNHTLLAGNILMVVEFVSDVNEMNWEEFYKSVAQMNEGSKVVTISRLRKSEKLGTVKPMFLNNHSDEELSYLFKMLAFGSANPKDHPRLVQISEENCHADAVHRDTCRSKCYCRCIEREFGLVHLKLVFNLVLICASKMDRRIFASVYSLVTGEWGDAIFTGPVSTIYHFGSPAILVGNALYWLLSVSGHHILEFNLETLTLAVTDGNWPETNFSSDCRYCIMRREDDNVSLAILSYSGFQMWERKVTLGGAAKWVLRKTVKLHGILGLSSAVQREKIDIVGYAEDLNAFILVVDMAFYMVQVDSMQFKKLFDCNVITCCHPFTSFYTADAAFEGIGAEDKLRLDC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0136150 | OsNip_10t0136150-00 | Chr10 | 2239218 | 2242139 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGCATGTCGTATCAGCAGTAACCGGTGAACTGGTCACCCGGTTCATCTCCTACCTCATGAGCAAGTACTCAAGAAGACATGAAATCTCAGAGGAGAAGCAGCTGAAAAGACTGCAGCAGCTTCTCCTACGAGTTTCCATGGTTGTCGAGGAGGCAGATGGGCGATACATCACCAACTCCGGGATGCTGATGCAGCTGAAGGCACTTGCTGATGCCATGTACAGAGGCCACCATGTCCTGGACATGTTCAGGTGCAGGACCCTAATTCAGGAGGATCCCATCAAGGAGGTTAGCAACCCATTTCCTCCCCTCAAACGTTTTTGCAAAATTGTTGATGCTTCTGGAAAGGACAAGGCCAGGCACCTTGAGTTGCACAGAACTTTGGAAATATTAGAAACTGCTGTTGATCACATGGCAGAATTTGTTGTTCTTTTGGGTGGATGCGATCGGATGTCAAGGAGACCATATGATACCTATCTTTACATAGATAACTTCATGTTTGGCCGTCATTCTGAAAAGCAGAGGCTCCTGAATTTCCTATTGGAATACAACCCTCCTGGTGTGCAGCCTGCTGTTCTTCCAATCATTGGTGCTCTTGGAGTTGGGAAGAAAACTCTGGTTGCGCATGTATGCGCCGACGAGAGGGTTCAATCACAGTTTTCTTCCATTTTGCATTTGAATGAAGGTGATCTTTTGGGAATAGCACACAATCATACTCTCTTGGCAGGGAACATTTTGATGGTTGTGGAGTTTGTTTCAGATGTGAATGAGATGAATTGGGAGGAATTCTATAAATCCGTGGCACAAATGAATGAGGGAAGCAAGGTGGTAACCATAAGCAGACTTAGAAAATCAGAGAAACTTGGAACTGTAAAGCCAATGTTTCTTAACAACCATTCAGATGAAGAATTGAGCTACCTCTTCAAAATGCTCGCATTTGGAAGTGCGAACCCTAAGGACCATCCACGATTAGTACAAATATCTGAAGAAAATTGCCATGCAGATGCAGTTCATAGGGACACTTGCCGCAGCAAATGCTACTGCAGATGCATTGAGAGGGAATTTGGATTAGTGCATCTAAAGTTGGTCTTCAACTTGGTCCTGATCTGCGCCAGCAAGATGGATAGGCGAATCTTTGCCTCCGTTTACTCATTGGTGACCGGCGAATGGGGTGATGCCATTTTCACAGGGCCTGTATCCACCATCTACCATTTTGGTTCACCTGCCATACTTGTTGGCAATGCCCTCTATTGGTTGCTATCTGTGTCCGGGCATCACATTCTTGAGTTCAATCTCGAAACGTTGACCCTAGCTGTGACCGATGGCAATTGGCCAGAGACGAATTTTTCTAGCGATTGCCGCTATTGTATCATGCGTAGGGAGGATGATAATGTCAGCCTTGCCATTCTGTCGTACAGCGGATTCCAAATGTGGGAGAGGAAGGTCACTCTTGGAGGTGCCGCGAAATGGGTGCTACGGAAGACTGTCAAGCTGCATGGCATTCTTGGGCTGAGTTCTGCTGTGCAGAGAGAGAAAATAGATATTGTGGGATATGCTGAGGATCTTAATGCGTTTATTTTAGTGGTGGATATGGCTTTCTACATGGTCCAAGTTGACTCAATGCAGTTCAAGAAACTCTTTGATTGCAATGTCATCACCTGCTGTCATCCCTTCACAAGTTTCTACACTGCAGATGCTGCATTTGAAGGCATTGGAGCAGAAGACAAGCTAAGGTTGGATTGTTGA
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| Protein seq | MEHVVSAVTGELVTRFISYLMSKYSRRHEISEEKQLKRLQQLLLRVSMVVEEADGRYITNSGMLMQLKALADAMYRGHHVLDMFRCRTLIQEDPIKEVSNPFPPLKRFCKIVDASGKDKARHLELHRTLEILETAVDHMAEFVVLLGGCDRMSRRPYDTYLYIDNFMFGRHSEKQRLLNFLLEYNPPGVQPAVLPIIGALGVGKKTLVAHVCADERVQSQFSSILHLNEGDLLGIAHNHTLLAGNILMVVEFVSDVNEMNWEEFYKSVAQMNEGSKVVTISRLRKSEKLGTVKPMFLNNHSDEELSYLFKMLAFGSANPKDHPRLVQISEENCHADAVHRDTCRSKCYCRCIEREFGLVHLKLVFNLVLICASKMDRRIFASVYSLVTGEWGDAIFTGPVSTIYHFGSPAILVGNALYWLLSVSGHHILEFNLETLTLAVTDGNWPETNFSSDCRYCIMRREDDNVSLAILSYSGFQMWERKVTLGGAAKWVLRKTVKLHGILGLSSAVQREKIDIVGYAEDLNAFILVVDMAFYMVQVDSMQFKKLFDCNVITCCHPFTSFYTADAAFEGIGAEDKLRLDC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.521817 | 0.283721 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0134700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04690 | RBH | 0.0 | 0.0 | 0.182464 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0136150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001870 | SBH | 0.119905 | 5.583566 | 4.447401 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001840 | RBH | 0.044863 | 0.376805 | 2.626086 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001820 | RBH | 0.118092 | 4.930942 | 4.651556 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001660 | SBH | 0.112309 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001670 | SBH | 0.349293 | 0.0 | 0.377295 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0039200 | SBH | 1.275105 | 3.129006 | 2.918844 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001920 | SBH | 0.097706 | 0.119665 | 0.279432 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0043600 | SBH | 1.3154565 | 2.7056175 | 6.260182 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001690 | SBH | 0.070345 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001740 | SBH | 0.046791 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001890 | SBH | 0.907097 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001670 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001880 | SBH | 0.0 | 2.117071 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001850 | SBH | 0.090756 | 0.394650 | 0.272367 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001630 | SBH | 0.000000 | 1.398935 | 0.165349 |
