Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0130800 | OGI:10007220 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:1890053-1893891 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATAATGGAAGCTTTTATTAAACTCAGTCAATTACATCAAGGTGATACAATTATCCTGAGAACACTTCCGGCCTCTGCATAACTAAGATGCACACCGCCGAACAAACAAAACGACACTCGAAAGGAAAAAAGAATGACATGGAGTATTGAGGACCATCAATCTAACGACTAAATTGCCACTCATGAACAACTCCTTGGCCATCTCCTCCAAAAGCACAGAGTTTTAAGGACCACCAATTCTAAGACTAGATCACCACCCATATCCCTGGGTAAAAAACTCCTTGACCACCTTCTCCAAATGTTGACATGCCGCAACTACCATATCCCGCGAATCAGGCTTCTGTAGGATAGCCCATATACGAAGCCAATGGATAAGAGAATATATAACCTGCAAATGTGAAGATATGACTTTTTTATCAAAAACCACATTATTCCTGTATAGCCAAAGCGACCAACAAGTAGCAGCTGCTCCTAACAGAACATGTGATTTCAAATTATTATGAATTCCATCAAGCCAGCTCCCAAACATATGCGCTACACAATGTGGTGGAGGAAGTCCAGATGCTGCTTGGATGATGGACCAAACAGAAAGGGCAAAACGGCATTCGAAGAAAAGATGTCTAATTGTCTCGTCATTGCAACAAAAACAACAATTCTTATTGCCTTGCCATTTCCTTTTTATCAAATTGTCCTTCGTTAACACCACTCCACGGCTTGGATAATGAGGACATGTAACTGGCTTGGATAATGAGGACATGTAACTGGATTGAAGTAAAAACAAGGACAGTTCGGCCTTGTTTTCATTTAGACTGAAAATCTTGAGCTTTGGTGCTTCGGGTAGACTCCTCAGTTTTGGACAGTTCCTGATGTCAGCCTTTTCAAGCAGAGGAAATGTTGATTCGTTTTCCACTAGTCTCTCTAAGCCCTCTAAATCATATAACTTGATTTTCTTTAATGCTGGAAATGGTGTGAAAGCCATTTCACAGCATAGTGTTTGCAGTTTTGGACATTTCTCTATTTCAACCTTCTCAAGCAGAGGAAACACTGGTTCATTTTCTTGTCTTCCTCCTGTTGCTACCCATCTCTCTAAAGCTTCCAAATCGTGCAACTTAATCTTCTTTAATGAAGGAAATGTTACGGATGCCATGTCAGGGATTAGTGTTAGAAACTTTGGACAGCTCTTGATAACAACGTTCTGAAGAAGATGAAATGTTTGTTCTTTTCCTTGTCTAACTTCCTTGCAACATAGGGTTTGCAATTTATCAAGTCTGATCAAACAGAGAACTTGAAGAGACTTAAATTGAATGAATTGAGGAAATTCTTCGCACATTGTACAACCCTCTAATTTGAGCTCCACCAAGTTTTGCAGTATACTTAGATCTGTCATCCATGCTGGAAAAATGAGTGCTTTTATAGGAAATTACGTTGAGCATCAGCAGCCCATGATGTGGTTTAAGAGCATCAAGAACCTTCCCATTGCAATTTGGTTCTTCAACACAGCATTCACTATTCCACACAAGAGATAGGCGTGCAAGTTTCTCTTTGTTTCTAAGATTGGCTGCTTTTGCATCTTCTTGAGATACATTTTCTAAGCCACGTAACTCTAGTTCACCACAGAGGTTTAAGCTGTGCAGTTCTCTAAGGGTGCTGCAACCAGAGCTAGCACCAACCACAAAATATGTTAGTGTCCGGATGGAAGTTAATTGCCCAAGCTCTGGAGGCATGCACTTCAATCTTAAGCATCCATTTGTATAGAGGTGACGTAGACTTGTCATATACTTCATATCCTTTGGGAGACCAACAAGAATTTTGCAATCAGAAAGGATCAAAGTCTGCAGATTGTACAGTGTGCATATATCTTCAGGAAGTACTTTGACATGATAGTTTCTGGAGATATCGAGATATCTTAGGTGCAGAAGGTGCCTTGGCCTGATTGGTAATGATTCTGTATTGAGATATCTCAGCCTTAGTGCTCGTAGAGAACTGCTCTTGGATAAAAGTGATGTTGAGATGTGAATATAGTCTCTGTCAAACAATAAAGTCCGGAGTGTTGAAGATTGTTTTCTCATAAAGTCATCTAAGAGAATAGTATTGTCATCGTCTAATGAGTAGAAGTGATACCTAGGATGCTCTAATGACTTACTTCTATAATCAGATCTGCCAACTATGCTGACACATTCTTCTCCCATAGCAGATTGAGCAATGTCATGCATAAGATCATGTATCTTGCATGTAGTTTGTAGAGGAAATTTCTGCACATCTTGAAAAAATGACCTCCAAACTAGCTCGTTGAAGATATGTTTGGCCACCATTTCTATATTGTCATCCTCTTGTAATGGTATCAAGTCATGTGCTAACCATAAGTTAATCAAAGTCTCCATATCAATCTCAAAATCTTTTGGGAATATAGCACAGAAGGCAAAACACCGCTTTATATGTAACGGTAGGTCATCATAGCTCAGACGAAGTATAGGAAAAATTATGTCCTCCCCCTCATTGCAAATGTTGCTCTTGGCTAATATATCCTTCCATTCTTGCAGAGTAGTCCTGTTAAATAACACCGAGCCAAAGGATTGGGCAGCTAAAGGAGAGCCATCGCATCTCTGCACAATCTTACGAAGAACTTCAAAATGCTCGTCACTTTTTTTTGACAAACTAAATGCTTTACTCTGGATTATTTCCATCAAATAAGCTTCTCCGAGCTTTTCAAGATTATGCACTGGAACTTCTCCAATAACCATAATTCTAGCAACTTCTGCATTTCGAGTTGTTGTTAGTACTACACTACCCATGCCACCCTTCTTAAAGCAGGTCTTTAGCTTTCCCCACTTATCAGAATCTCGATTCCATACATGATCCAACACAATGAGATACTTCTTTCCACCTACTTCTTTCTGCAAGTCCTGCAAAGCCTTCTCACGATCTCTCTCTGTGCTCATACATATGCTGTTTGCAATGGTGACAACATCAAACACATCTGACACACAACACCACCTACGAAGCGGGAAATACTTCTCAATTTCAGGGTCATTGTAAATGAGTTGTGCAAATGTAGTCTTTCCTAGCCCACCCATTCCGACAATAGGAAGAACTATGAGGTCCTTGCCTCTTGCTTCATCAAGCAACATCTTGATAATCTTCTTCTGCTCCTCATCTCTAGATCGGCTAATAATACCCTTCTCAGTATCAACCATGATGGAATCAGTTTGCCTCCACTGCTTTGGTGTTTCCTGCTGCTGTTTTATGAGTCCAGAGTAGTCCATCTCTGATATACAATCTTTTGCAATTTCTTACCCATCCTATAACGAAACACAATTGGGTTACGATGAGGGAAGAGGCTTACAATGCCTTTGCCAAGGGTAGCGTCGTGCCCCTTCTTCTTGGCTTCACGTCGGAGCGCCTCATACTTGAACTCGTCAAAGACATCGATTGCCTCGTAGGACACCTTCTTGAGTTCATCGAGCCAAGCGCTTAGTTCGGGTTTCTTACTTCTCTTCTCCTCCGTATCTTGGATGACGCTAAGGATAAGTGGAAGCATGCGCTCCAGAGCCTTACGCTGCTGCTCCATGCCTTCCATCACCTTGTACTGGTATACAAGGTAGCTGGAAGCTTTGTTCGTCACCGCGGAGAGCAGTGGCCTAACCAAAAACTCAGCCATCGTTGGTTCCCTCTAACACTGTAGACCTGAAGATTGTGGAATGAAGAAGATGAAGGCAAATACAACTAAAATGATATGCAGGAAGATGAAGCCAGATCTCCTAACCTCGTCGACCAAGATGTTTGTGGATCGGAGCAGCGCAGTCGCCGGTGCGGCACAGGGGAGGCGCTGGATGAGTCAC
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| CDS seq | ATGGCTGAGTTTTTGGTTAGGCCACTGCTCTCCGCGGTGACGAACAAAGCTTCCAGCTACCTTGTATACCAGTACAAGGTGATGGAAGGCATGGAGCAGCAGCGTAAGGCTCTGGAGCGCATGCTTCCACTTATCCTTAGCGTCATCCAAGATACGGAGGAGAAGAGAAGTAAGAAACCCGAACTAAGCGCTTGGCTCGATGAACTCAAGAAGGTGTCCTACGAGGCAATCGATGTCTTTGACGAGTTCAAGTATGAGGCGCTCCGACGTGAAGCCAAGAAGAAGGGGCACGACGCTACCCTTGGCAAAGGCATTGTAAGCCTCTTCCCTCATCGTAACCCAATTGTGTTTCGTTATAGGATGGGTAAGAAATTGCAAAAGATTGTATATCAGAGATGGACTACTCTGGACTCATAA
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| Protein seq | MAEFLVRPLLSAVTNKASSYLVYQYKVMEGMEQQRKALERMLPLILSVIQDTEEKRSKKPELSAWLDELKKVSYEAIDVFDEFKYEALRREAKKKGHDATLGKGIVSLFPHRNPIVFRYRMGKKLQKIVYQRWTTLDS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0130800 | OsNip_10t0130800-01 | Chr10 | 1890053 | 1893891 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTGAGTTTTTGGTTAGGCCACTGCTCTCCGCGGTGACGAACAAAGCTTCCAGCTACCTTGTATACCAGTACAAGGTGATGGAAGGCATGGAGCAGCAGCGTAAGGCTCTGGAGCGCATGCTTCCACTTATCCTTAGCGTCATCCAAGATACGGAGGAGAAGAGAAGTAAGAAACCCGAACTAAGCGCTTGGCTCGATGAACTCAAGAAGGTGTCCTACGAGGCAATCGATGTCTTTGACGAGTTCAAGTATGAGGCGCTCCGACGTGAAGCCAAGAAGAAGGGGCACGACGCTACCCTTGGCAAAGGCATTGTAAGCCTCTTCCCTCATCGTAACCCAATTGTGTTTCGTTATAGGATGGGTAAGAAATTGCAAAAGATTGTATATCAGAGATGGACTACTCTGGACTCATAA
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| Protein seq | MAEFLVRPLLSAVTNKASSYLVYQYKVMEGMEQQRKALERMLPLILSVIQDTEEKRSKKPELSAWLDELKKVSYEAIDVFDEFKYEALRREAKKKGHDATLGKGIVSLFPHRNPIVFRYRMGKKLQKIVYQRWTTLDS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.129863 | 0.132572 | 1.109858 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0130600 | RBH | 0.456001 | 0.159759 | 0.228452 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g04060 | SBH | 0.315870 | 0.131931 | 0.073934 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0130800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0001540 | RBH | 0.196032 | 1.356138 | 2.852128 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0001520 | RBH | 0.0 | 0.000000 | 0.152016 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0001540 | RBH | 0.285511 | 0.421885 | 2.699594 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0001450 | RBH | 0.047640 | 0.069303 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0001450 | RBH | 1.005645 | 0.798603 | 2.897794 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0033700 | RBH | 1.942883 | 0.407179 | 7.5599055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0001610 | RBH | 0.0 | 0.080400 | 0.197072 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0038600 | RBH | 0.068228 | 10.0783325 | 0.4204405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0001480 | RBH | 0.000000 | 0.052457 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0001570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0001590 | RBH | 0.0 | 3.179286 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0001470 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001560 | RBH | 0.037210 | 1.358669 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G001530 | RBH | 0.0 | 0.228235 | 1.228645 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001400 | RBH | 0.539703 | 0.0 | 1.143358 |
