Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0562400 | OGI:09061330 | 12/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:22341586-22345440 | ||||||||
| Gene Symbol | Os_F0783 | ||||||||||
| DNA seq | ATGCCGCCGTTCTCCAGCGAGCCAATGACGAACAACGAGGGGGAACCAGTGGAAGATGCGTCTTGCCGGTCAGTGCGGCGCCGGCGGTACCGAGAACAAACAAGTTCGTGCCTCTTCTTGCAACTCCCTCTTCGATCGGATTGCAATTTCATTGCTTTTTACGGTCTATATATATCCTTGTCTCGATCTGTTTGTTTCTACCGCAAAGCTGCTCTTTTGGTTTTGCGGATGGGATTGGAGGCTATAGGGTGGAGCTAAAAGATCAAAATCTGTGCGCTCTCCTTAATATACTTTTAAATTTGATCCTTTTTTTTGTGCATACCAAGATAAATCATTATCGTTTACTCCATCCCAATTCCCAAAACAAAAAACAACTTTTGTACATGAATCTATGTCCAGATTCGTGCACAAAAGTTGTTTTTTTTTTCTGGGACAGAAACTTCTCGTACTGCAATACATGAGGGTTTGTGCGGTCACGTCCAAAATTAATTAGCTAATTATTTGTCATGGCAGAGAATTTTCAGTTTGTATTCTCGGTTCCTAATGTTTGGCGTAAAACTTTGTGCAATTTCAGCAACTTAATCACTGCTCTTGTGTATCTCTTCCCTTTTATGTTGTTATCTTGTCGATTACCATCAACCGATGTTTTTTTAGGTACAAATAGTGCTCCACTTCGCCAACAAGGTGATATTTCTGAGGGCGCCCAAAACACTATGACAGGATTCGACTTTGATAGACTTCCACAGGTATGAATTTGAATGCTGATTCTAAAGTAATGCAGTTTCATATAAAAGAAGCAGTTGCCATTAGCATTGCACACATGGATCATGATTTTGTTTGTTGATCAACAAGTCAATGAATAACAATTTTCTTTTATATTTTTTTAGTTGTGCACGTTACATGCTTGTTGGCTGCATTGTTGCTTTGTGCCTTAACTGCCTTTTTCCTCTGGCAGTTTTAAGATTAGATCCTACAGTATATATAGCTCTCCTTTAACTTTGTTGGATTATACAACATTTAATCAGTAAGAGCTACTCATATCATTGGTCAGGATAAAAGGGAATCCTTCAATCAAATTTTTCCATGAACTCTCATTCTTTTTCTGAACCACATTATCCTTGATTTGACTCTTTTATCCATTTTTATTGCAGGATATCTTGTGCCATATACATTCCCTTATTCCGCTACGAGATGCTGCCTGCTTGGCTTGTCTGTCTTGTAGATTTCTACGCTCTTGGAGATGCTTCCCTAACCTCACATTCAATCAGGAAACATTCAGCTTGAATGTTTACGAGGGCACATCATATGAAAAAGAAAAGGAACCAGTGGATATAATTGACAGCATTCTTCAGAACCACTCTGGTACTGGGGTGAAGACACTTAAGCTTGATGTTTCTAATTACTTCAAACCCATCACGGCTGACCATATCAACAATTGGCTTAACGCTGCTGTTAAACCTGGAATCATTGAAATTGCTGTGAAATTTCCTGTACATAACAGGCCAATGTTCAACCTCTCTTGCTCACTTTTATCTTGTGCCGGAAGCTCACTTCAGTCTATTTCCTTGTTCTTTTGTGCTTTTCACCCAACATTAAGAACTGGCTGTTTCAAAAGCTTGAGAAGCGTGTATTTCAAATTTGTCCACATTACTAGTGAAGAACTAGGATGCCTTCTCTCCAGTACAGTTTCATTGGAGAAGTTGGAAATTAGCAATTGTGATCAGCTCACTTCCTTGAATATACCTTCTCATCTGCAGCACCTTACGGTCCTGAATGTGTTATTTTGCACAAATCTAAAGATGATAGAAATTTATGCTCCAAAGCTGACCACTTTTGACTTCAGAGGACGCCCTATGAAAATATTAACCAGTGACTCCTCGCATCTGAAGTACATGACTTTGCATGGTACATTCTTCTCTGGCATGATCCAATATGCTAGGACTGAACTCCATTCTATCGCATCGAATCTTCAGACTCTTACCCTGGCATCATCTAAAGAGGTCTGTTGAGTTACATTATGTACAGTTAATTTATTGCATATATTTGATAATTATGCCTTGAAGCATAACTAACCTTAGCATATTCTTTCTTCAGGATTTTATTACGCCAATGTTGCCTGTGAAATTCCTCCACCTCAGGAACTTGAATGTCTATTTTGATGGCATTAGATTCCAAAGCTATGATTATTTTTCTCTGGCTTCTTTTTTCGAGGCTTGTCCTGCCTTGGAAACTTTCTACATATGGGTAAGTATGTTAACTCTTTAGAGCTGTACATGTGAAAGATTTTTTTAGATGAAATATCAGCACTGGCTTACCTGCTTTTTAGAGAAAGCCCAGAACCAGTACTGTGGTCTTACAAAAAGTTTGCAAACTGAACGAAAAGGGGCAACATACTGGGGTTTCATGTTAAAACAGTTAACTCCTGCATCTTTGTAGACATATTTGATCTCTGTAAAATATCTGGTTAAGTTAGGGCTTTTACGTTATTATTAAGTGAAGTGTCTTGACATAGGCTTATATTCCGCAAGTAATAAGAAATCAGTACTCAATATTCTACCCTAGAAATTACTAGGTAACATTGATGACGTTACTGCTTTGAACAATATTGACCGATCTCTGTATTCAGTTCTTTTAGGCTTGTGTTCGGGGCTATTGGTTGGGAACTTCTCCCCTGCGCATGCAAAATGGAGCAGCTCATTAGCACATGATTAATTAAGTATTAGCTAAAATAAACTTCAAAAATGGATTAACATGATTTTTTAAAGCAACTTTCCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATACACACCCATATGGGACTCCATGGTGCCCGGGCTCCAAGGTATAAAACACACAAATTCTCTCAAATTTTTAAAAATTTTCAAATTGTGAGTATATACCTAGGTATATGAATTTGATTCATACAAATACCTAACAACAAAACAACTCAAACTCAACTTTATTTCACAATTCATTATTACATACCTAATGAATTATATGTTTGGATGTTATATACCTAGAACCAAAATCTAACCAAAAAAAAAGTTTAAACTCAGTTCAAACTTGTTTGAACTTGTTAGTAAAGAAGTTAATGTTCATATCTAAACATTTAAAAAAATTTCATACTCATTCAAATTGGGTATATACTCAATTTGAATCTTGGAGCCCATATTGGGTATATATATATATAACACACCTTAGCAGTTCATAGAAAACATCCTTAGAGTTTGTGTAGTGGTTGCCCTTTACATGAGGGGCCCTCTCATCTCCTCTCCACCCTCACCATTTAGTCTTGTGGCATCTTGGGGCTTGTGCTTAGAGTTCCATACTAGTATGCTTTATTGTGCTAACATATTGCATTGAAAATCTATTATGATATGCCTAGTCAAAACTGTTTTTCTGTTGGAGGATTATGTGACATCAAAATTGATTTTGTGCAGGCAGGAGAGTATGATCTTGCATGGAAGGACCCAGCTCTTCAAGATTCCAATGCAGATTCGTTACAGATAAGGCGGATTCCAGAAATCCACCATGCCAACCTTAAGAAAGTATCCATCAACCGATTTTTCCCGTCAAAGAGCTTGATTGAGCTAACATATCTAATTATTGAGAATGCCTCGTCGCTACAATGCCTTAAGCTGGACGCTGGCTATGGTTTTGACACTAGTGGCATGTGTAAAAGGATGAATAAGTTAGATGTACTCCATGCCCTCAGTGCTGTGGAGGTTGCCAAGAAATATATTGAGGGCAAAGTTCCCTCCAGTGTGAAATTCAACATTCTGGAGCCCTGCGAGCGGTGTCATATTGCAAAACTTTCCCAACTTTAG
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| CDS seq | ATGCCGCCGTTCTCCAGCGAGCCAATGACGAACAACGAGGGGGAACCAGTGGAAGATGCGTCTTGCCGGTCAGTGCGGCGCCGGCGGTACCGAGAACAAACAAGTACAAATAGTGCTCCACTTCGCCAACAAGGTGATATTTCTGAGGGCGCCCAAAACACTATGACAGGATTCGACTTTGATAGACTTCCACAGGATATCTTGTGCCATATACATTCCCTTATTCCGCTACGAGATGCTGCCTGCTTGGCTTGTCTGTCTTGTAGATTTCTACGCTCTTGGAGATGCTTCCCTAACCTCACATTCAATCAGGAAACATTCAGCTTGAATGTTTACGAGGGCACATCATATGAAAAAGAAAAGGAACCAGTGGATATAATTGACAGCATTCTTCAGAACCACTCTGGTACTGGGGTGAAGACACTTAAGCTTGATGTTTCTAATTACTTCAAACCCATCACGGCTGACCATATCAACAATTGGCTTAACGCTGCTGTTAAACCTGGAATCATTGAAATTGCTGTGAAATTTCCTGCAGGAGAGTATGATCTTGCATGGAAGGACCCAGCTCTTCAAGATTCCAATGCAGATTCGTTACAGATAAGGCGGATTCCAGAAATCCACCATGCCAACCTTAAGAAAGTATCCATCAACCGATTTTTCCCGTCAAAGAGCTTGATTGAGCTAACATATCTAATTATTGAGAATGCCTCGTCGCTACAATGCCTTAAGCTGGACGCTGGCTATGGTTTTGACACTAGTGGCATGTGTAAAAGGATGAATAAGTTAGATGTACTCCATGCCCTCAGTGCTGTGGAGGTTGCCAAGAAATATATTGAGGGCAAAGTTCCCTCCAGTGTGAAATTCAACATTCTGGAGCCCTGCGAGCGGTGTCATATTGCAAAACTTTCCCAACTTTAG
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| Protein seq | MPPFSSEPMTNNEGEPVEDASCRSVRRRRYREQTSTNSAPLRQQGDISEGAQNTMTGFDFDRLPQDILCHIHSLIPLRDAACLACLSCRFLRSWRCFPNLTFNQETFSLNVYEGTSYEKEKEPVDIIDSILQNHSGTGVKTLKLDVSNYFKPITADHINNWLNAAVKPGIIEIAVKFPAGEYDLAWKDPALQDSNADSLQIRRIPEIHHANLKKVSINRFFPSKSLIELTYLIIENASSLQCLKLDAGYGFDTSGMCKRMNKLDVLHALSAVEVAKKYIEGKVPSSVKFNILEPCERCHIAKLSQL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0562400 | OsNip_09t0562400-00 | Chr09 | 22341586 | 22345440 | + | RAP2018-11-26 | ||
| CDS seq | ATGCCGCCGTTCTCCAGCGAGCCAATGACGAACAACGAGGGGGAACCAGTGGAAGATGCGTCTTGCCGGTCAGTGCGGCGCCGGCGGTACCGAGAACAAACAAGTACAAATAGTGCTCCACTTCGCCAACAAGGTGATATTTCTGAGGGCGCCCAAAACACTATGACAGGATTCGACTTTGATAGACTTCCACAGGATATCTTGTGCCATATACATTCCCTTATTCCGCTACGAGATGCTGCCTGCTTGGCTTGTCTGTCTTGTAGATTTCTACGCTCTTGGAGATGCTTCCCTAACCTCACATTCAATCAGGAAACATTCAGCTTGAATGTTTACGAGGGCACATCATATGAAAAAGAAAAGGAACCAGTGGATATAATTGACAGCATTCTTCAGAACCACTCTGGTACTGGGGTGAAGACACTTAAGCTTGATGTTTCTAATTACTTCAAACCCATCACGGCTGACCATATCAACAATTGGCTTAACGCTGCTGTTAAACCTGGAATCATTGAAATTGCTGTGAAATTTCCTGCAGGAGAGTATGATCTTGCATGGAAGGACCCAGCTCTTCAAGATTCCAATGCAGATTCGTTACAGATAAGGCGGATTCCAGAAATCCACCATGCCAACCTTAAGAAAGTATCCATCAACCGATTTTTCCCGTCAAAGAGCTTGATTGAGCTAACATATCTAATTATTGAGAATGCCTCGTCGCTACAATGCCTTAAGCTGGACGCTGGCTATGGTTTTGACACTAGTGGCATGTGTAAAAGGATGAATAAGTTAGATGTACTCCATGCCCTCAGTGCTGTGGAGGTTGCCAAGAAATATATTGAGGGCAAAGTTCCCTCCAGTGTGAAATTCAACATTCTGGAGCCCTGCGAGCGGTGTCATATTGCAAAACTTTCCCAACTTTAG
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| Protein seq | MPPFSSEPMTNNEGEPVEDASCRSVRRRRYREQTSTNSAPLRQQGDISEGAQNTMTGFDFDRLPQDILCHIHSLIPLRDAACLACLSCRFLRSWRCFPNLTFNQETFSLNVYEGTSYEKEKEPVDIIDSILQNHSGTGVKTLKLDVSNYFKPITADHINNWLNAAVKPGIIEIAVKFPAGEYDLAWKDPALQDSNADSLQIRRIPEIHHANLKKVSINRFFPSKSLIELTYLIIENASSLQCLKLDAGYGFDTSGMCKRMNKLDVLHALSAVEVAKKYIEGKVPSSVKFNILEPCERCHIAKLSQL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.756673 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g38900 | RBH | 0.0 | 0.0 | 0.029745 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0562400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0019760 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0019850 | RBH | 0.0 | 0.0 | 0.445362 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0020060 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0019840 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0020080 | RBH | 2.765005 | 0.000000 | 6.463348 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0378800 | RBH | 1.1770175 | 1.244883 | 2.1912325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0019870 | RBH | 0.271483 | 0.256402 | 0.719762 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0367400 | SBH | 0.0251885 | 0.0474995 | 0.104502 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0019950 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0019650 | RBH | 0.172073 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0019700 | SBH | 0.000000 | 3.974756 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0019710 | RBH | 0.274003 | 0.0 | 0.344110 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0019850 | SBH | 0.000000 | 0.339743 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G020210 | SBH | 0.391565 | 0.402071 | 0.814474 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0020000 | SBH | 0.0 | 6.426352 | 1.394900 |
