Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0560850 | OGI:09065240 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:22284198-22286541 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATTTACTAAGATGGCAAATTACATAACCTTATTCAGAACAATACAAAACAATAAGAAGTGCCCAAAAAGAAAAGTTAGAAGAATCTCTCTAAATAGGATTGATTGAGCCCTTTTACTCTATACAAAATCAGTGATCAACTGCAATAAACACCCTTAGCAACATCAGAACAAAGTACCTCTGAAGCCTGAAACTTTCAGAGGTTCCTGTCCAACATCCAAAACCCCGCATTTCTTGGTGTGATCTGATCACATCGTACTGTAATGGCAGCCACCATAACCTGTAAACAAAATCAAATTACAGAAAAGAAAAGGTCACATTAGTTACAGGCTGTTAACTAGATAATTGCTGCACCATTTGGTCACTGAAAGTCTGAACTCTGAACAATCTGAAGAAGTTCATTTTGTACTGGATTGCGTGAAGAAGAAGAAGAAGAAGAAGAAGCTTACTTGGATCCTTGGTGATGAGCATGGCGGTGCCGCCAAAGTCGCAGGTGGCGCCGTTGGACTTGGCGCGCTGCCAGTAGCTGTTGAAGGCGTAGGAGGCGTGGGCGATCATGGTGTCCGGCCGGAAGCACGGCCCCGACGGCTGGATGGAGTCGCAGTCGGCGCCGGAGCCGCACGCGTAGTCCATCGCCGGCTGGATTATCCCCTCCGGCACCGACGGCTTCGCCACGCACCACACCGCGCGCCTCCCCGGCGGCCCCCGCGACGCGTACGGCGGCGGGAACACCACCGGCGGCAGGTACCCGCCACCACCGCCGGGCGGGCCCGGCGGTGGCTCCGGCGCGTACTCCGGCGGGCTCGGTGTGATCCCCGGTGGATACGGCGCGTACACCGGCGGCTCCGGCGCGTACTCCGGTGGGCTTGGCACGTATGACGGCGGCTGCGGCGCGTACTGCGGTGGGCTTGGCACGTATGACGGCGGCTCCGGCGAGTACTCCGGTGGACTCGGGAAGATCCCCGGTGGATACGGCGCGTACACCGGTGGTTCTGGCGCGTACTCCGGTGGGCTAGGTTCATAGCTAGGTGGGCTAGGCTCATAGCTTGGCGGGCTGGGGACGATGTCAGGTGGGCTTGGATATGGGGTGATCTCAGGTGGGCTAGGTGTGACTTCCGGCGGGCTTGGATATGGGGTGATCTTTGGTGGGCTAGGTACAACTTCAGGTGGGCTTGGATACGGCGTGATCTCTGGCGGGCTAGGTGTGATTTCGGGTGGGCTTGGATAAGGTGTGATTTCTGGCGGGCCTGGTGTGACTTCCGGTGGGCTTGGATAAGGTGTGATTTCTGGCGGGCTGGGTGTGACTTCCGGTGGGCTTGGGTAGATTATGGGTGGCATCGGTGTAACGATCGGTGGACTAGGTGCGATTTCAGGTGGGCTTGGCACAATTTCGGGTGGACTTGGATATGGCGTGATCTCTGGTGGGCTAGGAACAATCTCAGGTGGACTAGGATATGGCGTGATTTCTGGTGGGCTAGGAACAATCTCAGGCGGGCTTGGATACGGGTTGATCTCCGGTGGGCCAGGAACAACTTCAGGTGGACTTGGATATGGCGTGATCTCCGGCGGGCTAGGAACGATTTCAGGTGGACTTGGGTACGGTGTGATCTCTGGTGGGCTAGGAACAATTTCAGGTGGGCTTGGATACGGTGCAATTTCCGGTGGACTAGGTGTGACTTCCGGTGGACTCGGGTAGACTACAGGTGGCAATGGTGTAACAGACGGTGGCGGGCTTGGGCTTATATCCGGCGGTGGAGGGTAGTAGAGTGGCGGCGGTGGAGGAGAACTGTATGTGAATGTTGGTGCCGGAATGATCGGAGGGAGGAGGCAGCTGGGTGACATCGGAGGAGGAGGGGGAGGAGGGTTCGGCGGTGAGAATGCGTCGCCGTAGGGTGGAAGGATCGGTGTGCTGTAGTATGGATCAGACGACGACGAGTGGTAGTAGTAGTGATCGAGTAGTAGCTCATCTGGCCTTAACACTCTTGCTCCTGTTCAACCAACAAATCATTTGATTGTCAGCTTATAGGGGTCAAACGAATTTGATGCTTGAGAAAAAAACCTGTCAAAGAAGAAAACAATTTGTGGCACTAGACTAGCTTACTGAAGGATATATATTCTTTTGACGGTCAGAGTATCTGAACACGACGTAGTTAAGCCTTGGTTGTGCTTAACAATGAACATGATCCAAATTTAAATCACCACAAAATACAGACAAGAATTGGGATGCAAGAAGCATGGGGAATTAGGAGCATACCACATTGTGAGAAGGAAGCGAATGCAACGAAGATGGAGAAGAAATGCAACGGACGCAGGTAGCTGCTGCCCTCCTCCATGGCAGGATACATG
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| CDS seq | ATGTATCCTGCCATGGAGGAGGGCAGCAGCTACCTGCGTCCGTTGCATTTCTTCTCCATCTTCGTTGCATTCGCTTCCTTCTCACAATGTGGAGCAAGAGTGTTAAGGCCAGATGAGCTACTACTCGATCACTACTACTACCACTCGTCGTCGTCTGATCCATACTACAGCACACCGATCCTTCCACCCTACGGCGACGCATTCTCACCGCCGAACCCTCCTCCCCCTCCTCCTCCGATGTCACCCAGCTGCCTCCTCCCTCCGATCATTCCGGCACCAACATTCACATACAGTTCTCCTCCACCGCCGCCACTCTACTACCCTCCACCGCCGGATATAAGCCCAAGCCCGCCACCGTCTGTTACACCATTGCCACCTGTAGTCTACCCGAGTCCACCGGAAGTCACACCTAGTCCACCGGAAATTGCACCGTATCCAAGCCCACCTGAAATTGTTCCTAGCCCACCAGAGATCACACCGTACCCAAGTCCACCTGAAATCGTTCCTAGCCCGCCGGAGATCACGCCATATCCAAGTCCACCTGAAGTTGTTCCTGGCCCACCGGAGATCAACCCGTATCCAAGCCCGCCTGAGATTGTTCCTAGCCCACCAGAAATCACGCCATATCCTAGTCCACCTGAGATTGTTCCTAGCCCACCAGAGATCACGCCATATCCAAGTCCACCCGAAATTGTGCCAAGCCCACCTGAAATCGCACCTAGTCCACCGATCGTTACACCGATGCCACCCATAATCTACCCAAGCCCACCGGAAGTCACACCCAGCCCGCCAGAAATCACACCTTATCCAAGCCCACCGGAAGTCACACCAGGCCCGCCAGAAATCACACCTTATCCAAGCCCACCCGAAATCACACCTAGCCCGCCAGAGATCACGCCGTATCCAAGCCCACCTGAAGTTGTACCTAGCCCACCAAAGATCACCCCATATCCAAGCCCGCCGGAAGTCACACCTAGCCCACCTGAGATCACCCCATATCCAAGCCCACCTGACATCGTCCCCAGCCCGCCAAGCTATGAGCCTAGCCCACCTAGCTATGAACCTAGCCCACCGGAGTACGCGCCAGAACCACCGGTGTACGCGCCGTATCCACCGGGGATCTTCCCGAGTCCACCGGAGTACTCGCCGGAGCCGCCGTCATACGTGCCAAGCCCACCGCAGTACGCGCCGCAGCCGCCGTCATACGTGCCAAGCCCACCGGAGTACGCGCCGGAGCCGCCGGTGTACGCGCCGTATCCACCGGGGATCACACCGAGCCCGCCGGAGTACGCGCCGGAGCCACCGCCGGGCCCGCCCGGCGGTGGTGGCGGGTACCTGCCGCCGGTGGTGTTCCCGCCGCCGTACGCGTCGCGGGGGCCGCCGGGGAGGCGCGCGGTGTGGTGCGTGGCGAAGCCGTCGGTGCCGGAGGGGATAATCCAGCCGGCGATGGACTACGCGTGCGGCTCCGGCGCCGACTGCGACTCCATCCAGCCGTCGGGGCCGTGCTTCCGGCCGGACACCATGATCGCCCACGCCTCCTACGCCTTCAACAGCTACTGGCAGCGCGCCAAGTCCAACGGCGCCACCTGCGACTTTGGCGGCACCGCCATGCTCATCACCAAGGATCCAAGTAAGCTTCTTCTTCTTCTTCTTCTTCTTCACGCAATCCAGTACAAAATGAACTTCTTCAGATTGTTCAGAGTTCAGACTTTCAGTGACCAAATGGTGCAGCAATTATCTAGTTAA
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| Protein seq | MYPAMEEGSSYLRPLHFFSIFVAFASFSQCGARVLRPDELLLDHYYYHSSSSDPYYSTPILPPYGDAFSPPNPPPPPPPMSPSCLLPPIIPAPTFTYSSPPPPPLYYPPPPDISPSPPPSVTPLPPVVYPSPPEVTPSPPEIAPYPSPPEIVPSPPEITPYPSPPEIVPSPPEITPYPSPPEVVPGPPEINPYPSPPEIVPSPPEITPYPSPPEIVPSPPEITPYPSPPEIVPSPPEIAPSPPIVTPMPPIIYPSPPEVTPSPPEITPYPSPPEVTPGPPEITPYPSPPEITPSPPEITPYPSPPEVVPSPPKITPYPSPPEVTPSPPEITPYPSPPDIVPSPPSYEPSPPSYEPSPPEYAPEPPVYAPYPPGIFPSPPEYSPEPPSYVPSPPQYAPQPPSYVPSPPEYAPEPPVYAPYPPGITPSPPEYAPEPPPGPPGGGGGYLPPVVFPPPYASRGPPGRRAVWCVAKPSVPEGIIQPAMDYACGSGADCDSIQPSGPCFRPDTMIAHASYAFNSYWQRAKSNGATCDFGGTAMLITKDPSKLLLLLLLLHAIQYKMNFFRLFRVQTFSDQMVQQLSS |
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| Function | PLASMODESMATA CALLOSE-BINDING PROTEIN 3 [UniProtKB/Swiss-Prot:Q9FZ86] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0560850 | OsNip_09t0560850-00 | Chr09 | 22284198 | 22286541 | - | RAP2018-11-26 | ||
| CDS seq | ATGTATCCTGCCATGGAGGAGGGCAGCAGCTACCTGCGTCCGTTGCATTTCTTCTCCATCTTCGTTGCATTCGCTTCCTTCTCACAATGTGGAGCAAGAGTGTTAAGGCCAGATGAGCTACTACTCGATCACTACTACTACCACTCGTCGTCGTCTGATCCATACTACAGCACACCGATCCTTCCACCCTACGGCGACGCATTCTCACCGCCGAACCCTCCTCCCCCTCCTCCTCCGATGTCACCCAGCTGCCTCCTCCCTCCGATCATTCCGGCACCAACATTCACATACAGTTCTCCTCCACCGCCGCCACTCTACTACCCTCCACCGCCGGATATAAGCCCAAGCCCGCCACCGTCTGTTACACCATTGCCACCTGTAGTCTACCCGAGTCCACCGGAAGTCACACCTAGTCCACCGGAAATTGCACCGTATCCAAGCCCACCTGAAATTGTTCCTAGCCCACCAGAGATCACACCGTACCCAAGTCCACCTGAAATCGTTCCTAGCCCGCCGGAGATCACGCCATATCCAAGTCCACCTGAAGTTGTTCCTGGCCCACCGGAGATCAACCCGTATCCAAGCCCGCCTGAGATTGTTCCTAGCCCACCAGAAATCACGCCATATCCTAGTCCACCTGAGATTGTTCCTAGCCCACCAGAGATCACGCCATATCCAAGTCCACCCGAAATTGTGCCAAGCCCACCTGAAATCGCACCTAGTCCACCGATCGTTACACCGATGCCACCCATAATCTACCCAAGCCCACCGGAAGTCACACCCAGCCCGCCAGAAATCACACCTTATCCAAGCCCACCGGAAGTCACACCAGGCCCGCCAGAAATCACACCTTATCCAAGCCCACCCGAAATCACACCTAGCCCGCCAGAGATCACGCCGTATCCAAGCCCACCTGAAGTTGTACCTAGCCCACCAAAGATCACCCCATATCCAAGCCCGCCGGAAGTCACACCTAGCCCACCTGAGATCACCCCATATCCAAGCCCACCTGACATCGTCCCCAGCCCGCCAAGCTATGAGCCTAGCCCACCTAGCTATGAACCTAGCCCACCGGAGTACGCGCCAGAACCACCGGTGTACGCGCCGTATCCACCGGGGATCTTCCCGAGTCCACCGGAGTACTCGCCGGAGCCGCCGTCATACGTGCCAAGCCCACCGCAGTACGCGCCGCAGCCGCCGTCATACGTGCCAAGCCCACCGGAGTACGCGCCGGAGCCGCCGGTGTACGCGCCGTATCCACCGGGGATCACACCGAGCCCGCCGGAGTACGCGCCGGAGCCACCGCCGGGCCCGCCCGGCGGTGGTGGCGGGTACCTGCCGCCGGTGGTGTTCCCGCCGCCGTACGCGTCGCGGGGGCCGCCGGGGAGGCGCGCGGTGTGGTGCGTGGCGAAGCCGTCGGTGCCGGAGGGGATAATCCAGCCGGCGATGGACTACGCGTGCGGCTCCGGCGCCGACTGCGACTCCATCCAGCCGTCGGGGCCGTGCTTCCGGCCGGACACCATGATCGCCCACGCCTCCTACGCCTTCAACAGCTACTGGCAGCGCGCCAAGTCCAACGGCGCCACCTGCGACTTTGGCGGCACCGCCATGCTCATCACCAAGGATCCAAGTAAGCTTCTTCTTCTTCTTCTTCTTCTTCACGCAATCCAGTACAAAATGAACTTCTTCAGATTGTTCAGAGTTCAGACTTTCAGTGACCAAATGGTGCAGCAATTATCTAGTTAA
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| Protein seq | MYPAMEEGSSYLRPLHFFSIFVAFASFSQCGARVLRPDELLLDHYYYHSSSSDPYYSTPILPPYGDAFSPPNPPPPPPPMSPSCLLPPIIPAPTFTYSSPPPPPLYYPPPPDISPSPPPSVTPLPPVVYPSPPEVTPSPPEIAPYPSPPEIVPSPPEITPYPSPPEIVPSPPEITPYPSPPEVVPGPPEINPYPSPPEIVPSPPEITPYPSPPEIVPSPPEITPYPSPPEIVPSPPEIAPSPPIVTPMPPIIYPSPPEVTPSPPEITPYPSPPEVTPGPPEITPYPSPPEITPSPPEITPYPSPPEVVPSPPKITPYPSPPEVTPSPPEITPYPSPPDIVPSPPSYEPSPPSYEPSPPEYAPEPPVYAPYPPGIFPSPPEYSPEPPSYVPSPPQYAPQPPSYVPSPPEYAPEPPVYAPYPPGITPSPPEYAPEPPPGPPGGGGGYLPPVVFPPPYASRGPPGRRAVWCVAKPSVPEGIIQPAMDYACGSGADCDSIQPSGPCFRPDTMIAHASYAFNSYWQRAKSNGATCDFGGTAMLITKDPSKLLLLLLLLHAIQYKMNFFRLFRVQTFSDQMVQQLSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.377542 | 0.000000 | 0.307586 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g38784 | RBH | 0.300187 | 0.000000 | 0.076077 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0560850 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0019660 | RBH | 0.000000 | 5.297318 | 0.321932 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0019750 | RBH | 0.065211 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0019960 | RBH | 0.000000 | 4.485603 | 0.289694 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0019740 | RBH | 0.000000 | 0.029942 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0019950 | RBH | 0.563212 | 0.0 | 0.259894 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0377900 | RBH | 0.5989625 | 1.058197 | 0.295485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0019740 | RBH | 0.000000 | 0.166896 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0364400 | RBH | 0.569766 | 0.3294175 | 1.2564885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0019860 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0019590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0019600 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0019630 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0019760 | RBH | 0.000000 | 0.789184 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G020130 | RBH | 0.000000 | 0.0 | 0.978468 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0019920 | SBH | 2.188928 | 22.151260 | 10.231097 |
