Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0540600 | OGI:09062500 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:21276447-21280591 | ||||||||
| Gene Symbol | OsWD40-173, WD40-173, OsMed4_1, Med4_1 | ||||||||||
| DNA seq | ATCGTCTCCCCAATCTTTTTGGCGGGAGAGCACCACAGCGCCGCCTCCACTTCCCGCGCAATTCGCAAGAGAAGAGCCATGGACGGCGGGTCCTCCACGGCGGCGAGGTCGTCGGCGGCGGAGATGGAGGAGCACCAGAACTGGAAGAAGAACGCGCCGGTGCTCTACGACCTCGTCATCTCCCAGCCGCTCGAGTGGCCGTCGCTCACCGTCCAGTGGCTCCCCTCCCACTCCCGGTCGCCGGGCTCCGCCCGCTCCCACCGCCTCGTCCTCGGCACCCACACCTCCGACGAGACGCCCAACCACCTCCTACTCGCCGACGCCGCCCTCCCGCTCCCGCCCCGCCTGGCGGCGGCGGCCGCGGCGGCGGGCGGTGCCGTCCCGGCCCCGTCCGTGTCCATCTCCCGCTCGGTGCCGCACAAGGGCGAGGTCAACCGCGCCCGCTGCATGCCGCAGAGGCCGTACACGGTGGCTACCAAGACCTGCGTGGATGAGGTGCACGTGTACCATCTTGGCGACGGCGGCGAGAAGGGCGGCGCCGATGTGGTGCTCAGGGGGCATGAAGCGGAGGGGTATGGGCTGGCGTGGAGTCCGATGAAGGAGGGGTTGCTGCTGAGCGGCTCGTATGATAAGAAGATTTGCCTTTGGGATCTCGCTGCTGGGAGTGGAGCTTCGTCTCTGGATGCACATCATGTGTTCGAGGTAATGCGCCGTCAAATGCCCCCCTCCCCTCATTCCATTTTGCAGTAAACATTTACAGTCGTTAAATGTTACATTATACGATGCAGTTGAGCAATGATTCGTAATTCATAATCCAATTCATTTAGTAAGGATGCTTCGATTGTTTCTTCCCCTTTTTTTTTTCAGTAAACAAATTTTGATCTGCCAGATCTCTTAGTAAACAATATTGAAATAATGAAATTGAACTGTTTCTGGTCTTTCCTAAATGTTGGAAGAGAATCATTATAACTGAAATAACTGCACAATTCCAGAGTAGATAATTGCACTGCGTAGGAGAAAGGACACAGCAATTGAATAACTAGTCGAGAAGAGAACATGGTTCCATTTCCATAGCTGCATTTTAAGCACAAACAATCATCTCTTGGTGTGAGGAACAATTCTATTATGCATAAACAGATCACTGAGTTTTTTTTATGTGAGCGTTCTAGAAGGCACCTGAGCTGATTAGCAAACATCATGAAATTGGGATGTTTTAAATGTAATTGTGGAAAGAGTTTTTTTATGACCTTTGGAGGTATTAAAACTAGGAGATACCTCTACTTTGCAATACTCTGGAGGATAGTAAATTAGCTCTTGTTTTCCAGAACAATCAGTATCTGTTTTGGCATGCAAGGAATGGCTAGCACCTAGCAAGCTAGTCGAGCAATTCTTGTACGCACGTAAAAGCAATATTGAATATGCAGCAGTTCATGTAACAATGTTGTATAATTCCTCTTTCCAATCTGCTAACAGTTCTCTACAACCATTTTACGGACCTTGTGATCTTTTATATTATAATTTTATCAGCCACTTTGTGTTATTGATTGCTTTCTTATTTCACTGGTTTAACCGTAAGTGCTTTAGTCAGATCATTTGTCCAAAAATATTTTGATGGAAATCTAAGTTAGGACTTGTGTGAGGGTTGTTTCATTTGGTCCAACAGAAGAATTCCACTGTATTGTGGCAGCAAGCATAACAAAGATGTCAAATATATAGTTCGTGCCACTGCTATCCTGTTTCCTTTTCAGAGTGACATATATCATAGTCACGCTTTTTGCAGGCTCATGACGATGTTGTTGAAGATGTTGCATGGCACCTGAAAGATGAAAACCTATTTGGATCTGCTGGGGATGACTGCAAGCTGATGATGTGGGACTTGCGTACTAATAAACCAGGACAATCTATAGTAGCACACCAAAAAGAAGTAAGCATGATTTAATCATGAGTTGCTGAACTAATCATTTTCTGTGCTGCTCAGCACATCATATAGGCTATAGCTTGTAAAAGCATATTCCTCTTTTCATTTTCATTGACCTTGGCTTTTCCTTTATGTACATTGGAGTGGCCTATGATGCCTGTTTTATGCAGGTTTAGCTCCTTCTATCTGTCTGCTTCATGATTTATTATCTATATAGTACTGCAATATAAATCACACATAAGGTTCAGCAATATTTTTCTCTTCACTGTAGTACAAGCTATACTGATGTTTGTGCTGAGCTTTATGGTTTACTCTTATAAAACTGTCGTGCTGTTCATAATACACATTATTGCTTTCTCAGGTAAACTCTTTGTCCTTCAATCCGTTTAATGAGTGGATCTTGGCTTCAGCATCTGGAGATGCAACTATTAAGCTATTTGACTTGCGAAAACTGTCAAGAAGCCTGCATGTATTCGACAGCCATGAGTATGATTTCTTGCTGTAGCCTCCGTCCTTCAGTCATTCCCTTTTTCTTTTTCTTTTTTCTCTACATTATCGTGCCCTGACCAGTCCCCCATCTCTGCTGCTGTGCAGTAGTGTATGGTAATGTGTTGTTACACTTGAGACTTGAGGCATGCAAATAACCAAATCGTCCAAGAACATCTTGATCATTTACATAAAAATGATTTTTTTTCTTATGTGCTCATTACATTGCGATACTCGCAGGAAGTGCTATTTTACTCGTACTGTTACAGTAGTTGTTATTATATCATCTGTGCCATTTGAACCCATGTGTTAGAAAATCATAAGCATCTGGTTGATATGAATGAGGCCAGTGACAGTGTTCCCGTAAAACACAAAAGCACACTACTTATCTCGCTGATTTTGCTACCTGTATAAGGATATAGGAGAGCTGAATAATTCTTTGCTAAAGGCAAGAACTTTTGAGCTAAGCTACTCCTTTACTTTCAAGTTTGTCAGGAAAGTTATTACTAATCAACATGGCATACTAGCAAACAGTTTGTCAGTTACACTACATGTGGTTCTCCGGTCTAACTGAGTTATGCAACCTAATTGATTTTCTGATATGCAAATGACATTTTTCTGTTGCATGTTAGCTCCTGTAGGGGAGAGGTTTTTCAGGTTGAGTGGAATCCTAATTTGGAGACTGTGTTAGCATCCTCAGCTGCAGACAAAAGGGTGATGATATGGGATGTTAGCAGGTAAATTTAGTCGACTAGTCTCCTATGATCTACTTCAACCTTATATTTGCAGTTAGTATTTTACGTTATACTAACTGAAACAGAAAAAGGAATTACTCAAGACAATAGCTTCAATGACCTTTAGGACCTATTTGGTTTGGAGGAAATTCATGGGAATTTTGAAGGAATTGAACTGTTTCCTGTGAAAATCCTGTAAAATTCCTGCATTCGGAAGGAGTCTTTAGCAGTATAAATGGTTACACACGTATACAATTACTCCTAGTTAAAAGCTACACATCTAGCTATTCAGTACTATGTGAATTACCTTTGGGAGCTTTATCTTTAGAGTTTAGCTTTACTAGTTCGGGTGATTTGCTAACATTGTACCTGCATTCACAAAATTAGAATCCCCATTGTTTGTCATGCTTTGTATGTCCCACTGACATGATAGATTGATAGATTCCTGCCCAACTGAAACTAAAGCCTGCATTCTCACTGGCGAGTGGCGACACATTTGCTTTTAGATCTGCGTCTGCTGCGCCTTTGCTGGTTCTCACTGCCCTGTGTGTTCTACCTTTCAGGATCGGAGACGAGCAGGCAGAGGAGGATGCAAACGATGGTCCACCGGAGCTGCTGTTCGTGCATGGAGGCCACACAGCCAAGATATCAGAGTTGTCGTGGAACCCCACCCAGAAATGGGTCATGGCCAGCGTGGCCGAGGATAACATCCTGCAGATCTGGGAGATGGCAGAAAGCATATACTGTGATGACAATTATCTCCATGACAATGATGATGACTCGTGCCCAGCCACATAAGGACCTGGCCAACTTCCCTATTCTGTTTCTGTTGCGTCTTTGGATAGCTTGGTTGGATTGATCATATATTCAGTTAGTAACCTCTAGTAGGCTTTGAGATGCTGTTGTTTAATCAGCTTTCGTTTTCGTTTGACACCTCCAATCCAAGGATGGAACATCTTGATGTAGAATGTCCAACTATTTACTACTGTATGCCTTGCCTTGCCTCC
More
|
||||||||||
| CDS seq | ATGGACGGCGGGTCCTCCACGGCGGCGAGGTCGTCGGCGGCGGAGATGGAGGAGCACCAGAACTGGAAGAAGAACGCGCCGGTGCTCTACGACCTCGTCATCTCCCAGCCGCTCGAGTGGCCGTCGCTCACCGTCCAGTGGCTCCCCTCCCACTCCCGGTCGCCGGGCTCCGCCCGCTCCCACCGCCTCGTCCTCGGCACCCACACCTCCGACGAGACGCCCAACCACCTCCTACTCGCCGACGCCGCCCTCCCGCTCCCGCCCCGCCTGGCGGCGGCGGCCGCGGCGGCGGGCGGTGCCGTCCCGGCCCCGTCCGTGTCCATCTCCCGCTCGGTGCCGCACAAGGGCGAGGTCAACCGCGCCCGCTGCATGCCGCAGAGGCCGTACACGGTGGCTACCAAGACCTGCGTGGATGAGGTGCACGTGTACCATCTTGGCGACGGCGGCGAGAAGGGCGGCGCCGATGTGGTGCTCAGGGGGCATGAAGCGGAGGGGTATGGGCTGGCGTGGAGTCCGATGAAGGAGGGGTTGCTGCTGAGCGGCTCGTATGATAAGAAGATTTGCCTTTGGGATCTCGCTGCTGGGAGTGGAGCTTCGTCTCTGGATGCACATCATGTGTTCGAGGCTCATGACGATGTTGTTGAAGATGTTGCATGGCACCTGAAAGATGAAAACCTATTTGGATCTGCTGGGGATGACTGCAAGCTGATGATGTGGGACTTGCGTACTAATAAACCAGGACAATCTATAGTAGCACACCAAAAAGAAGTAAACTCTTTGTCCTTCAATCCGTTTAATGAGTGGATCTTGGCTTCAGCATCTGGAGATGCAACTATTAAGCTATTTGACTTGCGAAAACTGTCAAGAAGCCTGCATGTATTCGACAGCCATGACTCCTGTAGGGGAGAGGTTTTTCAGGTTGAGTGGAATCCTAATTTGGAGACTGTGTTAGCATCCTCAGCTGCAGACAAAAGGGTGATGATATGGGATGTTAGCAGGATCGGAGACGAGCAGGCAGAGGAGGATGCAAACGATGGTCCACCGGAGCTGCTGTTCGTGCATGGAGGCCACACAGCCAAGATATCAGAGTTGTCGTGGAACCCCACCCAGAAATGGGTCATGGCCAGCGTGGCCGAGGATAACATCCTGCAGATCTGGGAGATGGCAGAAAGCATATACTGTGATGACAATTATCTCCATGACAATGATGATGACTCGTGCCCAGCCACATAA
More
|
||||||||||
| Protein seq | MDGGSSTAARSSAAEMEEHQNWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHLLLADAALPLPPRLAAAAAAAGGAVPAPSVSISRSVPHKGEVNRARCMPQRPYTVATKTCVDEVHVYHLGDGGEKGGADVVLRGHEAEGYGLAWSPMKEGLLLSGSYDKKICLWDLAAGSGASSLDAHHVFEAHDDVVEDVAWHLKDENLFGSAGDDCKLMMWDLRTNKPGQSIVAHQKEVNSLSFNPFNEWILASASGDATIKLFDLRKLSRSLHVFDSHDSCRGEVFQVEWNPNLETVLASSAADKRVMIWDVSRIGDEQAEEDANDGPPELLFVHGGHTAKISELSWNPTQKWVMASVAEDNILQIWEMAESIYCDDNYLHDNDDDSCPAT |
||||||||||
| Function | Histone-binding protein MSI1 [UniProtKB/Swiss-Prot:O22467] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0540600 | OsNip_09t0540600-01 | Chr09 | 21276447 | 21280591 | + | RAP2018-11-26 | ||
| CDS seq | ATGGACGGCGGGTCCTCCACGGCGGCGAGGTCGTCGGCGGCGGAGATGGAGGAGCACCAGAACTGGAAGAAGAACGCGCCGGTGCTCTACGACCTCGTCATCTCCCAGCCGCTCGAGTGGCCGTCGCTCACCGTCCAGTGGCTCCCCTCCCACTCCCGGTCGCCGGGCTCCGCCCGCTCCCACCGCCTCGTCCTCGGCACCCACACCTCCGACGAGACGCCCAACCACCTCCTACTCGCCGACGCCGCCCTCCCGCTCCCGCCCCGCCTGGCGGCGGCGGCCGCGGCGGCGGGCGGTGCCGTCCCGGCCCCGTCCGTGTCCATCTCCCGCTCGGTGCCGCACAAGGGCGAGGTCAACCGCGCCCGCTGCATGCCGCAGAGGCCGTACACGGTGGCTACCAAGACCTGCGTGGATGAGGTGCACGTGTACCATCTTGGCGACGGCGGCGAGAAGGGCGGCGCCGATGTGGTGCTCAGGGGGCATGAAGCGGAGGGGTATGGGCTGGCGTGGAGTCCGATGAAGGAGGGGTTGCTGCTGAGCGGCTCGTATGATAAGAAGATTTGCCTTTGGGATCTCGCTGCTGGGAGTGGAGCTTCGTCTCTGGATGCACATCATGTGTTCGAGGCTCATGACGATGTTGTTGAAGATGTTGCATGGCACCTGAAAGATGAAAACCTATTTGGATCTGCTGGGGATGACTGCAAGCTGATGATGTGGGACTTGCGTACTAATAAACCAGGACAATCTATAGTAGCACACCAAAAAGAAGTAAACTCTTTGTCCTTCAATCCGTTTAATGAGTGGATCTTGGCTTCAGCATCTGGAGATGCAACTATTAAGCTATTTGACTTGCGAAAACTGTCAAGAAGCCTGCATGTATTCGACAGCCATGACTCCTGTAGGGGAGAGGTTTTTCAGGTTGAGTGGAATCCTAATTTGGAGACTGTGTTAGCATCCTCAGCTGCAGACAAAAGGGTGATGATATGGGATGTTAGCAGGATCGGAGACGAGCAGGCAGAGGAGGATGCAAACGATGGTCCACCGGAGCTGCTGTTCGTGCATGGAGGCCACACAGCCAAGATATCAGAGTTGTCGTGGAACCCCACCCAGAAATGGGTCATGGCCAGCGTGGCCGAGGATAACATCCTGCAGATCTGGGAGATGGCAGAAAGCATATACTGTGATGACAATTATCTCCATGACAATGATGATGACTCGTGCCCAGCCACATAA
More
|
|||||||
| Protein seq | MDGGSSTAARSSAAEMEEHQNWKKNAPVLYDLVISQPLEWPSLTVQWLPSHSRSPGSARSHRLVLGTHTSDETPNHLLLADAALPLPPRLAAAAAAAGGAVPAPSVSISRSVPHKGEVNRARCMPQRPYTVATKTCVDEVHVYHLGDGGEKGGADVVLRGHEAEGYGLAWSPMKEGLLLSGSYDKKICLWDLAAGSGASSLDAHHVFEAHDDVVEDVAWHLKDENLFGSAGDDCKLMMWDLRTNKPGQSIVAHQKEVNSLSFNPFNEWILASASGDATIKLFDLRKLSRSLHVFDSHDSCRGEVFQVEWNPNLETVLASSAADKRVMIWDVSRIGDEQAEEDANDGPPELLFVHGGHTAKISELSWNPTQKWVMASVAEDNILQIWEMAESIYCDDNYLHDNDDDSCPAT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.316987 | 0.0 | 0.915146 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36900 | RBH | 0.210350 | 0.0 | 0.231166 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0540600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0018140 | RBH | 0.0 | 0.0 | 0.409429 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0018220 | RBH | 0.0 | 0.000000 | 0.375240 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0018440 | RBH | 0.0 | 5.747634 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0018190 | RBH | 0.0 | 0.571080 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0018380 | RBH | 0.000000 | 2.333173 | 1.512871 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0358100 | RBH | 4.9226305 | 3.069969 | 1.275164 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0018170 | RBH | 0.0 | 0.206755 | 0.352770 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0345700 | RBH | 2.020655 | 0.9078765 | 5.7178345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0018270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0018020 | RBH | 0.201817 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0018010 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0018000 | RBH | 0.0 | 0.0 | 0.148618 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0018140 | RBH | 0.0 | 0.880424 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G018520 | RBH | 0.0 | 3.821158 | 0.678044 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0018390 | RBH | 0.0 | 4.774212 | 3.850373 |
