Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0538400 | OGI:09062230 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:21189530-21190738 | ||||||||
| Gene Symbol | DLN231, R2R3-MYB, OsDLN231, OsMYB108, MYB108, OsMYB31, MYB31 | ||||||||||
| DNA seq | AGCATCAAGTATTATTTGTCATGATTAGTCAATATATGGTAATTACAACAGAGACAAAATGGAGCAGCAAGAGCAGCAGAGGAGATGTTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTTTTCACCTAGAAGAAAAGCTAACCAATATCCAAGTGACAAAACGAAAGAAGAAACTACAGAGGAGGAGGTGCTCATTTCATTTCCAAGCTTCTGAAGTCGAGCATGGCTGTCCTGAGTCCCAGGAAGCTGCTGCACTTGCAGTCTGTGCTCTTGGGGAGCCCCAGGCTGCAGCTGAAGCAGACGCCGGTCTCCCTCTTCACCGGCTTCATCATCATGGGCTCTTCTTGGGAAGGGAGGCTGATGCAGAGGTCCAGATTGAGGTCAGGGCACTTGAGTGGCTTCCCATGGCCCCAATCGGCGGCTGCCTGCTGCTCCTGTGCCACTGTCACCGCCTTCGGCTGATGAGGATGGTCCTCTCGCCGGAACACGGCGGCCTTGTCGTCCCTCGCCGCCGCCGCGGCCGCCTCGAATGATATGGTGATGTTGGACGCGCTGTCGTTGATCGGCCGGTGTGTCACCGGGTCGATGCCACGGCTCAGCAGCTTCCTCCTGATGTGCGTGTTCCAGTAGTTCTTGATCTCGTTGTCCGTTCTTCCTGGCAACCTCCCGGCTATCAGAGACCATCTGCATCAAACAGGAGTAGCAACAACAACAACAACAAACAACCGTTTTAGCAATCAGAACAGTATCAAACACGAGCTCTTTATATATAAAAACTGAAACTGATACAACTCATATTCATGCATGCAAATCCTAGTATCATTGAGATGAACACACGTACTTGTTGCCTAAAAGGCTGTGAAGCTTGATGATCAGCTCATCCTCCTCCTCGGTGAAGTTGCCGCGCTTGAGGTCAGGCCGGAGGTAGTTGATCCACCGGAGGCGGCAGCTCTTGCCACAGCGGAGGAGGCCGGCGGCCTTGGGCAGCGATCGCCAGCAACCTTCGCCGTGCGCCTTGATGTAGGCAATGAGCCGGTCATCTTCCTCCTTGGTCCATGCTCCCTTGTTGGTGTGTGCCTTCTCGCAGCACGGTGACCTCCCCATGAAGACGATGAAGCTTTCTTGATTCTTTCCTTTCTTCTGCTGCCTCGGTGGGTTGTTTCAGTGGAAGTTGCTGCTGCTGCTGCTGCTGCTGTTGC
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| CDS seq | ATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGCGAAGGTTGCTGGCGATCGCTGCCCAAGGCCGCCGGCCTCCTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTCCGGCCTGACCTCAAGCGCGGCAACTTCACCGAGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTCTGATAGCCGGGAGGTTGCCAGGAAGAACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAGGAGGAAGCTGCTGAGCCGTGGCATCGACCCGGTGACACACCGGCCGATCAACGACAGCGCGTCCAACATCACCATATCATTCGAGGCGGCCGCGGCGGCGGCGAGGGACGACAAGGCCGCCGTGTTCCGGCGAGAGGACCATCCTCATCAGCCGAAGGCGGTGACAGTGGCACAGGAGCAGCAGGCAGCCGCCGATTGGGGCCATGGGAAGCCACTCAAGTGCCCTGACCTCAATCTGGACCTCTGCATCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGAGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCAGGACAGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGA
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| Protein seq | MGRSPCCEKAHTNKGAWTKEEDDRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPVTHRPINDSASNITISFEAAAAAARDDKAAVFRREDHPHQPKAVTVAQEQQAAADWGHGKPLKCPDLNLDLCISLPSQEEPMMMKPVKRETGVCFSCSLGLPKSTDCKCSSFLGLRTAMLDFRSLEMK |
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| Function | Myb-related protein Hv1 [UniProtKB/Swiss-Prot:P20026] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0538400 | OsNip_09t0538400-01 | Chr09 | 21189530 | 21190738 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGGAGGTCACCGTGCTGCGAGAAGGCACACACCAACAAGGGAGCATGGACCAAGGAGGAAGATGACCGGCTCATTGCCTACATCAAGGCGCACGGCGAAGGTTGCTGGCGATCGCTGCCCAAGGCCGCCGGCCTCCTCCGCTGTGGCAAGAGCTGCCGCCTCCGGTGGATCAACTACCTCCGGCCTGACCTCAAGCGCGGCAACTTCACCGAGGAGGAGGATGAGCTGATCATCAAGCTTCACAGCCTTTTAGGCAACAAATGGTCTCTGATAGCCGGGAGGTTGCCAGGAAGAACGGACAACGAGATCAAGAACTACTGGAACACGCACATCAGGAGGAAGCTGCTGAGCCGTGGCATCGACCCGGTGACACACCGGCCGATCAACGACAGCGCGTCCAACATCACCATATCATTCGAGGCGGCCGCGGCGGCGGCGAGGGACGACAAGGCCGCCGTGTTCCGGCGAGAGGACCATCCTCATCAGCCGAAGGCGGTGACAGTGGCACAGGAGCAGCAGGCAGCCGCCGATTGGGGCCATGGGAAGCCACTCAAGTGCCCTGACCTCAATCTGGACCTCTGCATCAGCCTCCCTTCCCAAGAAGAGCCCATGATGATGAAGCCGGTGAAGAGGGAGACCGGCGTCTGCTTCAGCTGCAGCCTGGGGCTCCCCAAGAGCACAGACTGCAAGTGCAGCAGCTTCCTGGGACTCAGGACAGCCATGCTCGACTTCAGAAGCTTGGAAATGAAATGA
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| Protein seq | MGRSPCCEKAHTNKGAWTKEEDDRLIAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLSRGIDPVTHRPINDSASNITISFEAAAAAARDDKAAVFRREDHPHQPKAVTVAQEQQAAADWGHGKPLKCPDLNLDLCISLPSQEEPMMMKPVKRETGVCFSCSLGLPKSTDCKCSSFLGLRTAMLDFRSLEMK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.573155 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0549000 | RBH | 0.626800 | 0.229492 | 4.718536 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36730 | RBH | 0.0 | 0.0 | 0.580203 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0538400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0017970 | RBH | 0.521195 | 28.785158 | 4.038730 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0018060 | RBH | 0.0 | 5.446156 | 1.125629 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0018280 | RBH | 2.181170 | 32.609127 | 4.982000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0018030 | RBH | 0.0 | 0.761781 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0018210 | RBH | 0.772807 | 2.887200 | 12.710344 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0356100 | RBH | 22.1156645 | 44.354776 | 3.764043 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0018020 | RBH | 0.259100 | 2.460436 | 0.840155 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0344100 | RBH | 36.2627155 | 29.5809985 | 14.6095995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0018090 | RBH | 0.0 | 0.143768 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017840 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0017860 | RBH | 0.0 | 12.221916 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0017840 | RBH | 0.802919 | 0.0 | 0.740542 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0017970 | RBH | 0.238287 | 8.858744 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G018350 | RBH | 0.000000 | 3.938218 | 4.536396 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0018220 | RBH | 0.425087 | 66.126923 | 3.933454 |
