Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0533600 | OGI:09061570 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:20962267-20967452 | ||||||||
| Gene Symbol | BSR1, OsRLCK278, RLCK278, PTK15, OsPTK15 | ||||||||||
| DNA seq | AGTTATCTACCAATCAAATCAAATGTATTCTCATACTACTATCCTCATCCTAAATAAGCCTAAAAAATAGAAAGGAAAACAAAAAACAAAAACGCCAAGAATCCACCAACTCGTCTCTGTGTCTCTCTTTCTGTACTTTTCTTTCTTCATTCATGCCGTGATCGATGATAGCAGCAGAGTGCAACCTCACCTCCTCCTCGCCGGCTGCGGCGCGACGTCGACCCTCTTCCCCTTGCCGGAGGCGGCGGCGGCGGCGGCGGGGGGAGGAGGAGGGTCGGGCTGCGACTGGACGGCGCGGCGGAGGACGTCGACGACCTCGGACATGGTGGGGCGCTCCTTGGCGTTCTTGAGGAGGCAGGACTCGGCGAGCTTGGCGATGTCGCGGGCGGCCTTGACGGAGTACTCGCCGCGGAGCCTGGGATCCATGATCATGCGGAAGTTGCGGCTGTCGGGGGCGAACTGGGCGACCCACTCCAGCAGCTTCTGCTCCCCCTGCGGCCGGTGGCGGTCCAGCGTCCGCCGCCCCGTCAGGATCTCGTACAGCACCACCCCGAAGCTCCACACGTCGCTCTTCACCGTCAGGTGCCCCGTCTCTATGTAGTCCGGCGCCGCGTACCCGTGCGTCCCAACCACCTGCCACACATCATCATCATCATCATCATACACCATCTTGAGCTCAGCTATGTATGTATCATATAGTAAGAACATGAAAAAGAAAAATTCAAACCTCTGATCGATTGGACTACGACAAGAAAAATAAACGAAGCAACTAAGACCGATTTATGGATAAGACATGTTTTTAGCGAACCGTTCAAAAGCCAAAATGACATCAAATAGGGTACATGAAGGTAAAAACAAAAAAAAAACAATTTAAAACTAAGCAACTACAAATAGTTTATAGATAAAACCTTTATATATGTGTGTGTTATTAGTGGTTTAAAGCTAAGGCTATTAAGGGGGTGTTTGGATACCCTGACTAAACTTTAGTCCCTGGTACATCGGATGTTTGGACACTAATTTAGAGTATTAAATATAAACTAATTATAAAACTAATTACACGGTGGAGGTTAATTTGCGAGACGAATATATTAAGCCTAATTAGTCCATGATTTGATAATATAGTGCTACAGTAAATATGTGCTAATCATGGATTAATTAGGCTTAAATAGATTTGTCTCGCGAATTAGCCTCTATTTGTGTAATTAGTTTTATAAGTAGTCTATGTTTAATACTCCAAATTAGTGTCCAAATATCCGATGTAACAGGGACTAAAGTTTAGTCAGTGTATCCAAACAACCCCTAAATAGACTATGATGAAAAGACCCAAAATCAACTTTAGAATTATGTTTTAGAATTCAAATTTTTTGTTGTGGCTAATAAGCCAATAAGCAGACAATTATAGCATTGATCCATTTCCTAAGGATAATAACATAGCTCAAAGCTCCTTCGCAATGCAGGAATTTCATGGAAATCTTCTAAAATTCCTATGTTCCAAAGGTCTGGTATGGTATGCCATAGAGCAGTTCTGCGTCAATGCTGACACAAGGTGCAAAATTCAGGGGGAGAAGAGTGATGCATGCGTGGCATGTGTGCATATGTAAGGAAGTGGTGGCAACTTGGTCCATGGCATTGACTTGCTGGATTGCGGTCAAGATTGTCAGGTACACATCAAACAGGTGCACTGGACTGCTTGCCTACTTCAGTCAACGATGCTTTAAAGGCTGTAGTATATAAGTTGCTTTCAGTGCCTGATGGATCAGACAATGCAGTTGCGAGAAGGCTATGGTTTTGTTTGTAATTCTAATAGCAGGTTCAGATGGAGACATACCGCTGTTGAGACGTGAGTGTTTGCTCCTGTTGGTCCCTCCCTTGCTAGCCCGAAGTCCGACAGCTTTGCTCTGAAGTCTTTGTCCAACAAAATGTTAGATGCTTTGAAGTCCCGGTAGATTACCTATCAAAATTGAGCAAATCAGATGAGGATCTTCCCTTTTGTACAAAATGGAAATGTCGTAACCAAAGAAGAAGAAAAGCTGAAGTAACTTTGTATACTAAGCAGCAGTACGCAATTAGCACTGTAAATTATGACGATGACCTGAAAAAATGTGATAGGTTTAGCCTTCCCTAACAGCCTGTATATCTTGATGCTCACCAGCTATAGAGCCTTCTTGCCTAAGTCCTTAATTGTTTTCTAGATTGGAATACTTGGTTCTACAGCTAAACTAGAACATAGAGAGGACAAATCGTATACGTTGGTTGCAACTAGGAGTAGTTAGTACTGATTATGCTTTCAGAAAGTGTCAATGAAATTTGGTGCCTGGAATCTTACAGGAAAGTAATGGAGATGGAGATGGAATTGAACAAACCACTTTTGCCTCTTTTTCATCTAGCTCATCAATTCGTGGTCCTTATTTTCTCATTGACTTTACACTGGAATACTGGATTCACTGCACCTCTATTGCACTACCTCTAGTTACTATGGATGCACGGTCAAAAGAACCTATTAAAACGTTGGTGCTGTCTCTCATCATATATTTTTATTGCCAAACTTTCTCCCACAAAAAACGAAATCACCTATTTGATAAAGATATATCTTTTCAGAGAAGTTGAAAGCATGTGGGCAATGTATGTCTGAAGTATACCTGAACTTGCCCTTCATGCAGGTAAGCTAATCCTTCTGCAGCACCCAAGATTATTTGAAGCCTTCTATTCCATGAGAGAGGAGGATAAGCTCGGACGAATAAGTGATCTTCCAGGCTCTTATTAGGCATATACTCATACACCAATAATCTTTGTGGCCCCCTTTCACCATCAACGGCACAATATCCAAGAAGCTTTACAAGGTTTGGGTGCTCAAGAACCCCAAGGAACTGTACTTCCGCCAACCACTGCTTATGTCCCTGGGAGCAAAATTAAAAGAAACTGCAAAATATTAGGAACAGAAGACAGGATTACTCATTAGAGGGATAGCATAGGAGATCAACCGCATTTGTTTTAGTAGCATTATAGCACAAAGCAAATATAGGAAACCAACAGACCTAATGCTGCCTTACAAGTAGTTTATTCATAACATCACTATAATTAGCGTGCATCCTAAATTCCTAATATACATCAACTGGTCAAGAAAAGACATCATAACTGAGTCAGTAAAATATCATCTAATTCGAGTAGAGAAACTTGGAAAAATCCTTATATTTTTAGCAGACACCACTTAGAGAAAATGAAGCTTATGCTTGGGTATTCTATTAAGTTCAGGACTTGAAATTAATTATTTCCTGTACTCCACTAAACGATATATTCACTACCGGTTTGTCAGTCTTTAGACATCACTTGCATAAATTCAGAATGGATATAGAGTCGCAAAGCACATGGAAATTGAAGTTTCTAGCTGACTTTTGTTCTATATGTTCACGCACCAAAATTTTTCCTCCTAGTGAGTGAATAATAGTCAAATAAGACTAGCAACATGGTTGTGCAGGTTGCCCAGAAACGTAATCTATTCTATCCATTAGTCTTCTTTGATTGAGCAAATTAGCTAACGGAATATTGATTTAGAGTGAAAGGTTGGTTCGCATCATTTTCTAGGAGACATATTTCTACTGTAAGCATTCAGAGAAGACATGGTCTACTATTAATATTGATTGCCATTTGTTTTATGATGACCATGAATGAATATTCAACTTCCAAGTTTGAGGAAGTAAGGTTCCTAGATACTTGAAAAGTTCATTGCCGTTCAAATTCTATCCTGTATTTCCCCTCCATTTTGCTTTATTATGAATAAACAGTTGCCACGTGTGCCCATTGGTCCTATATTTAACCACATCTCCACGCCCAGCACCTCAACTAGTAATAGTTTATGCAGACCAGTAACTTCTATAGTCAACTGACAATGGACTGAAGTAATCCAATGCAATAGATTGACCCCATAAAATATACTATCAAAATTGTAAAATAACAGTAACAGGCAATATCTCATCCTTGAAAGTTCTGCATTTTGATCCTGTCTTCCTGTCAAGATTGTCTACACAGAGAGAGATTTTTAACATACTGATAATAGATAACCAAACCAATTTCAACATTTAGCAAGCCAGGAATATTTCCAATATTCCGGCAAACTAGAAAATGACTTGTGTCCATGGACTTCCTATGGATCAGAACAACATACTTGTCAGTTTATCCAGAGACCAATTCAAGATCAGCTAACACCAAGCACAGAATCCATTAACTTTACTCCCCATAATGAATCTTCCCATAACAGTCGTTAATCTAATCTAGTGGTCACTACTGATGATTTTCATCAAATTTGGCAGAACTACACATTAAAAACAAAAACTCGCTAAGTTGCCTGAAAGCATTCTTCTGCATTCTATGCCAGGATCTTGGCGAAGAGAAGTATCAAGAACAACAAAAATGGCATCATTTGGGATCTCCCTTAAAAAAACACTTCCCTTATCTACCAGCACTAATTTCTGACAATACTGAACATAAGAGAGCAAACCTTAAACTAACAAAACTCATTCCCCAATTCTCCTATTCCCAAATTCCTATTCACCCCTAGTTATCAAACCGGAAATCAATCGCGCAGAATCACAAAGGGGGGAATACTACTCCTGGATCGGAATGGAGGATTCGTTCCCGGGTGACAACTGACAAGACATGATTGATGGTGTCCAAGAAAAGTCAAGAGGAGGGGGTGCAGACTGCAAAGAGAGACAGAGACAGGGGAACGAGAAGGAGGAGGAGAGCACGCAAACAAGCGAGTACCTGGAGACCCCGCTGGTTCAGGCACTTGACGGCGACGGCGAGGCGATCGGCGGCCTTGCCGTCGGCGGGGGAGGAGCGGACGAAGCCCTTGTAGACGCTGCCGAAGCCGCCCTCGCCGAGCTTCTGGGCGCGGCTGAAGCCGTTGGTGGCGGCCTGGAGCTCGTCGTAGTCGAAGTCCCGGAGCTGGCCGTGGCCGCGCTCCTCGTACAGCGACGAGATGCTCCGGTGCGACGACGTCGACCCCGTCGACTTGCTCGCCGGCCTCACCGCCCCGGAGTCGTCCGACCTGCTCGTGCTCACCGCCGACACCGTCGTCGTCGTCGAGCCCCGCCTCCCCGACGATTCCTTGCTCTTGGACGACCTCCGCTTCTTGAACCAACCCAAGCAGCTCATTTCTTGCAGCAAGCAAGCACGCACGCACGCAC
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| CDS seq | ATGAGCTGCTTGGGTTGGTTCAAGAAGCGGAGGTCGTCCAAGAGCAAGGAATCGTCGGGGAGGCGGGGCTCGACGACGACGACGGTGTCGGCGGTGAGCACGAGCAGGTCGGACGACTCCGGGGCGGTGAGGCCGGCGAGCAAGTCGACGGGGTCGACGTCGTCGCACCGGAGCATCTCGTCGCTGTACGAGGAGCGCGGCCACGGCCAGCTCCGGGACTTCGACTACGACGAGCTCCAGGCCGCCACCAACGGCTTCAGCCGCGCCCAGAAGCTCGGCGAGGGCGGCTTCGGCAGCGTCTACAAGGGCTTCGTCCGCTCCTCCCCCGCCGACGGCAAGGCCGCCGATCGCCTCGCCGTCGCCGTCAAGTGCCTGAACCAGCGGGGTCTCCAGGGACATAAGCAGTGGTTGGCGGAAGTACAGTTCCTTGGGGTTCTTGAGCACCCAAACCTTGTAAAGCTTCTTGGATATTGTGCCGTTGATGGTGAAAGGGGGCCACAAAGATTATTGGTGTATGAGTATATGCCTAATAAGAGCCTGGAAGATCACTTATTCGTCCGAGCTTATCCTCCTCTCTCATGGAATAGAAGGCTTCAAATAATCTTGGGTGCTGCAGAAGGATTAGCTTACCTGCATGAAGGGCAAGTTCAGGTAATCTACCGGGACTTCAAAGCATCTAACATTTTGTTGGACAAAGACTTCAGAGCAAAGCTGTCGGACTTCGGGCTAGCAAGGGAGGGACCAACAGGAGCAAACACTCACGTCTCAACAGCGGTGGTTGGGACGCACGGGTACGCGGCGCCGGACTACATAGAGACGGGGCACCTGACGGTGAAGAGCGACGTGTGGAGCTTCGGGGTGGTGCTGTACGAGATCCTGACGGGGCGGCGGACGCTGGACCGCCACCGGCCGCAGGGGGAGCAGAAGCTGCTGGAGTGGGTCGCCCAGTTCGCCCCCGACAGCCGCAACTTCCGCATGATCATGGATCCCAGGCTCCGCGGCGAGTACTCCGTCAAGGCCGCCCGCGACATCGCCAAGCTCGCCGAGTCCTGCCTCCTCAAGAACGCCAAGGAGCGCCCCACCATGTCCGAGGTCGTCGACGTCCTCCGCCGCGCCGTCCAGTCGCAGCCCGACCCTCCTCCTCCCCCCGCCGCCGCCGCCGCCGCCTCCGGCAAGGGGAAGAGGGTCGACGTCGCGCCGCAGCCGGCGAGGAGGAGGTGA
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| Protein seq | MSCLGWFKKRRSSKSKESSGRRGSTTTTVSAVSTSRSDDSGAVRPASKSTGSTSSHRSISSLYEERGHGQLRDFDYDELQAATNGFSRAQKLGEGGFGSVYKGFVRSSPADGKAADRLAVAVKCLNQRGLQGHKQWLAEVQFLGVLEHPNLVKLLGYCAVDGERGPQRLLVYEYMPNKSLEDHLFVRAYPPLSWNRRLQIILGAAEGLAYLHEGQVQVIYRDFKASNILLDKDFRAKLSDFGLAREGPTGANTHVSTAVVGTHGYAAPDYIETGHLTVKSDVWSFGVVLYEILTGRRTLDRHRPQGEQKLLEWVAQFAPDSRNFRMIMDPRLRGEYSVKAARDIAKLAESCLLKNAKERPTMSEVVDVLRRAVQSQPDPPPPPAAAAAASGKGKRVDVAPQPARRR |
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| Function | Probable serine/threonine-protein kinase PBL19 [UniProtKB/Swiss-Prot:Q9LTC0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0533600 | OsNip_09t0533600-01 | Chr09 | 20962267 | 20967452 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGCTGCTTGGGTTGGTTCAAGAAGCGGAGGTCGTCCAAGAGCAAGGAATCGTCGGGGAGGCGGGGCTCGACGACGACGACGGTGTCGGCGGTGAGCACGAGCAGGTCGGACGACTCCGGGGCGGTGAGGCCGGCGAGCAAGTCGACGGGGTCGACGTCGTCGCACCGGAGCATCTCGTCGCTGTACGAGGAGCGCGGCCACGGCCAGCTCCGGGACTTCGACTACGACGAGCTCCAGGCCGCCACCAACGGCTTCAGCCGCGCCCAGAAGCTCGGCGAGGGCGGCTTCGGCAGCGTCTACAAGGGCTTCGTCCGCTCCTCCCCCGCCGACGGCAAGGCCGCCGATCGCCTCGCCGTCGCCGTCAAGTGCCTGAACCAGCGGGGTCTCCAGGGACATAAGCAGTGGTTGGCGGAAGTACAGTTCCTTGGGGTTCTTGAGCACCCAAACCTTGTAAAGCTTCTTGGATATTGTGCCGTTGATGGTGAAAGGGGGCCACAAAGATTATTGGTGTATGAGTATATGCCTAATAAGAGCCTGGAAGATCACTTATTCGTCCGAGCTTATCCTCCTCTCTCATGGAATAGAAGGCTTCAAATAATCTTGGGTGCTGCAGAAGGATTAGCTTACCTGCATGAAGGGCAAGTTCAGGTAATCTACCGGGACTTCAAAGCATCTAACATTTTGTTGGACAAAGACTTCAGAGCAAAGCTGTCGGACTTCGGGCTAGCAAGGGAGGGACCAACAGGAGCAAACACTCACGTCTCAACAGCGGTGGTTGGGACGCACGGGTACGCGGCGCCGGACTACATAGAGACGGGGCACCTGACGGTGAAGAGCGACGTGTGGAGCTTCGGGGTGGTGCTGTACGAGATCCTGACGGGGCGGCGGACGCTGGACCGCCACCGGCCGCAGGGGGAGCAGAAGCTGCTGGAGTGGGTCGCCCAGTTCGCCCCCGACAGCCGCAACTTCCGCATGATCATGGATCCCAGGCTCCGCGGCGAGTACTCCGTCAAGGCCGCCCGCGACATCGCCAAGCTCGCCGAGTCCTGCCTCCTCAAGAACGCCAAGGAGCGCCCCACCATGTCCGAGGTCGTCGACGTCCTCCGCCGCGCCGTCCAGTCGCAGCCCGACCCTCCTCCTCCCCCCGCCGCCGCCGCCGCCGCCTCCGGCAAGGGGAAGAGGGTCGACGTCGCGCCGCAGCCGGCGAGGAGGAGGTGA
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| Protein seq | MSCLGWFKKRRSSKSKESSGRRGSTTTTVSAVSTSRSDDSGAVRPASKSTGSTSSHRSISSLYEERGHGQLRDFDYDELQAATNGFSRAQKLGEGGFGSVYKGFVRSSPADGKAADRLAVAVKCLNQRGLQGHKQWLAEVQFLGVLEHPNLVKLLGYCAVDGERGPQRLLVYEYMPNKSLEDHLFVRAYPPLSWNRRLQIILGAAEGLAYLHEGQVQVIYRDFKASNILLDKDFRAKLSDFGLAREGPTGANTHVSTAVVGTHGYAAPDYIETGHLTVKSDVWSFGVVLYEILTGRRTLDRHRPQGEQKLLEWVAQFAPDSRNFRMIMDPRLRGEYSVKAARDIAKLAESCLLKNAKERPTMSEVVDVLRRAVQSQPDPPPPPAAAAAASGKGKRVDVAPQPARRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.678648 | 0.865354 | 1.012087 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36320 | RBH | 0.363262 | 0.460688 | 0.225407 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0533600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0017640 | RBH | 0.0 | 4.483645 | 0.520054 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0017740 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0017950 | RBH | 0.000000 | 1.701338 | 3.121821 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0017700 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017850 | RBH | 0.0 | 2.274642 | 2.644010 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0351400 | RBH | 2.2533625 | 18.828595 | 8.9922215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0017680 | RBH | 0.000000 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0339500 | RBH | 3.1533475 | 21.3385545 | 6.0202795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0017740 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017520 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0017530 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0017460 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0017590 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017980 | RBH | 0.0 | 0.0 | 0.911800 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017820 | RBH | 0.0 | 0.000000 | 0.000000 |
