Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0531800 | OGI:09061190 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:20857047-20861083 | ||||||||
| Gene Symbol | GAUT1, OsGAUT1 | ||||||||||
| DNA seq | GAATTTCATTGATCCACAGTTCCACACTTACACATATGGCAATGTCAGTTGCCAACAATACTCCTGACAATTTCGATGGCAACACCCACCCTAAACACACAATCAACAGGTTTCTCCTTATAATATCGATGGTCAAACAAAACAGCACATCATCAATTGAACGAAAGAACTACTGTAAGCCTAAAACACACGTTCGTGAGAACATCTAGCTTTTTTTTTAAAAAAAAAAGACAGGGAGAAGGGCAATCAATAGCTCCAGCTCTAGCTACTATACTTTGATCGAGCGAAGCATGTTTCGCAGGGAGAAGGGGCACTTCTGATCAGGCTGGGTGATATCCGTCAGCTTTACATCACATCTACTTGGCCAAGTTGCATCCACGGATGTAAGGGTGATCATACTTTATATACCTTGTCCAATATGGTCTGTACTTGGTCATACTTGGTCATTGCCAACTCCAGCCATGGCTTCATGTTACCGTTGTAATCAACAACGGCTGCATTATCTATCTCTGAGCGGTCAATGCTTGGGTTGTATCCTAATCCGAGGACATGCCACGACTTGTCAAGGGGATGCGTCAACTTGAAGAAGGTCAAGAGGCCGTGTGGAAGTGTCCCAAGCTTCCAAAGAACCCGGTCTTCGTTCTGTTAGAAGAAAAAAAAAAAAAGCAACATTGATGTTAGAGTAAATCGTTTTGCATGACATCTCTAAATCAATGAGATCCAATCATGGAAGTAGTAATCTCACCATGTTTTGCCACCTGTGGTAGATCCCAGTGATATCTTTCTTCTTCCACTCGTTCAGATCAAAGATGTTCATTCCATATGCCCAGCCACATGCATTTGGATCGAAGTTCCGAGCGATATGTGGATTTGAAAAGTTAAGATACTTGTCAAAACGATGAAAACTCTCCCCACAGGTCTCCACTGCACCGGTGACCTTCCCATTAAGATCAACATCCCATAATCCCGTCAAATCTTTCTGCACGACTATGTCATCATCAAGGAAAAATATCTTATCCAACTTTGGATAGACCTGTGGGAGATAAAATCTCAAGTGGTTCAGCATGGAGAGGTACTTGGGGTTACGATACTTTAGGTTTGAAGAACCCGCAGAGAGAGTGGTGGGGCGGTCAGCTTTGAAATAATACTCTTTCATGGCTGCAGACTCAAGTTGCCGTAAAACAGGACAGTATGATGAGTTCAACCACTTAAATTCATCTACGTTCTCAACATGGATGGTGGCCTTCCCAGGAGGGTTCAGCAAAAACCACATGTTCATGGCTCCAAAGTTCAACTTATCAGTCACAAGATGGAAAACATGCTTCTCAGGCTCCTGAAAAGATTATGCCATAGATAGCTGTTAGAACAATTATCACACTTTGCACTTGATTAAAAAGGAAGACGAAACTACCTTAGCATTCATGATGGTTGAGTTCACAACAGATGCTGCCAAGACATTGTCTGAGAAAAGTGCATAATGGTAGAGCTCTGGATTTTCCAAGTTCTCGCTCCTCGGGAACTTCCTTTTCTCCAACGGGAGGAGATAGTAATCTATTGTTAAGCGCATCGACAAACAATGAATGCTGTTTGGAATTGTCTTCGCAGCCAACTGGCTAAGAAATGTACTCTGCTTCTTCAAGCTCCTGACTTGTTCATCTGCTGACTGAAGCATAGCTCTAAGTCTCTGAGTAACCGCCTTGCAATCATACACATCTTCTCTAGCCTTGGATAGAAGTTGACCCATTACTCTGACTTTCTCAGGTGCACTGCAAAGTACATTATTTGTCATGATAGAGAACAAGATGAGATATAAAAATATGACGTGAAAATAGGCACAAACCTATGATGAAGGTCAGAATCAGCAGTAGCCTCTCCAACAGCCCGCTGGCTTTCCTTGATCCTGGTTTGCAGCTCTTGATAAAGATCATTCTTGTTCTTTGATTTAGCAAGCACAGAATAAACACGTGCCATAATAATCTGGTCTCTCATCAATCTAACTGTCAAATCTGAGTTCTCATTCTCATTCTCCTTTCTCCAAATGCTGTATTTCCCAAGGACAGCAGAATCTTTGATCGATCAATAGCAGCATTCTCCAGCTTAACACGTGCTTCATCATCTTTCCTTACAAATCCATTGCCCTCTTTTCACGCCTTTTCTCCCTTAGTTTCTTTAGTGACCAAACAGTATCAAGGGATGAATGATGTCATAATGCATACGATAGAAACAAATAACAATGCATCAATGTACATACAAGAAGATCAGCATTCTTACCCTTCGAACATTTTTTGCAGCCGTGTCGACTTGATGTTCATCTGCACAGACAAGAAGTTTATTTTCTTGCATACCTAATCAGACGATGTAAAAATTTAAAATGTGCTTTTTTTTAAAAAAAAGCATGGTTATTTTTGTACCAGTATCATCCTTGAGTGTTTTATCTGTAGAGCTGTTTGCAGATTTAACCTTGTCATCAATATCCAAACTCGCATTGCTCAGGTCATTGACTAGATCATCAGTTTTCCAAGAGGGAGATGCACGTTTTATGAAAAAATCAACACTCAAAGCACCTGCTTCTTGTTGACTAGAAGCTAAAGCATCAAACATCTGGAGACCAGAAGGCATGTATAAGACTAAAAGAACAGAAAAATTGAGGATACTTCTGAACAAGAAGACAGTTTCTTATGCAAATAACAGTAGATGGTAATTGAAAAATCAAAATGTCCGCAACAGAATTACAGAGCAGATAGGGGACACAGCATGCAAATCTACTTGGAACAACAGAGAGTAGCATGGTATTTAGAGAAAAGGCAATCAGTTGCAAGGACAAATCAGAGAGGATGACGTTGCGAAATTAGTAGCATAGCAAAGATGAGCACGTTGTTATGTACCCTTGTACATTTCCATGAAACCAAAAAAGAAAGATAAGAAATTATATTACTAAGTCGCGAGACAATTCTGACCTCCTTGGACAAAATAGATTTCAGGTTGTTCGTTGGCAGCTGTTTTTGCCATTCTGTTTCCTGCAAGAAAGCTTTAATGTGAGATGGATCCTCAAAATTTAGGCTAAGCAATTAACTAGCTCCCAGAATGGAAAAATACCTGAGTACCTTCCATATCCATGGGATCTGCAGGTAAACAAACTACAACATCACTTATCTATTTCAAATCAGTATAACAGTATTCAAATACTACAAAACATTGACAATGTTCCTACAGTTCTAATAAATGTAGTTTTCTTGTTTATAGGCTTTTGGCACTACAATTACATCCACAATTCACTTGTGCACCCTAGATTCTTAATAGCTAGGGCTTTCCCCACAATGTCACACATCTAACCTAGCAAAGGCACAAGTGACACTACAATAGATAGGAAAATGGTTTCCAAAATCACTTGAATCACAACTTCAACTGTCTGCTGTAAACTCATGATTCCTCCAAAGTGCGATGGATTAATTTTTTGTTTCCAAAACAGAGCATCATGATCCAATTATCTACGTTTTCTATCCAAAATCATAACCAAGCCTACTAATACAACTCATCAATTGAATTTAACAATAGTACCTAAACCACTGACATCTACTCGGATTCCATTCCGAGTAATATCCCTCAGACCAACGCTGGGAAACTAACCAAACCTGAACACATCACTCCCCAGTCCCCACCCCCACCTTAAAAAAAAAAAAACAATCTAGATGCTACATTCGCGACGGAGGATGCGATTAACAACCGACAGCGCCGCGCATCAGGAGGGGGGAGGGGGATGCAAACCGGAACCTGAGCCGACGTGGCCCCCATTGCACGCGACGAAGAAGATCGACGGCGCGAGAACGAAGAGGAACACGACGACCACCAGCGGCGCCACCACGCCGCGCCTCCCTCCTCCGCCGCCGCCGGCCGTGGAGTACGGGAGCCGCTTCGAGTTCGCCATCTCCAGCGAAGGGTAGGATCCGCGGGGGTCCACCTCGCCGGAGAGTGCACGTACGTCGCGCGCGGCGCGCTTCCCTCTCCGCCTCCTCCGCCGAGAGTGGGGTGGGGGGAGT
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| CDS seq | TCGATCAAAGATTCTGCTGTCCTTGGGAAATACAGCATTTGGAGAAAGGAGAATGAGAATGAGAACTCAGATTTGACAGTTAGATTGATGAGAGACCAGATTATTATGGCACGTGTTTATTCTGTGCTTGCTAAATCAAAGAACAAGAATGATCTTTATCAAGAGCTGCAAACCAGGATCAAGGAAAGCCAGCGGGCTGTTGGAGAGGCTACTGCTGATTCTGACCTTCATCATAGTGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTATCCAAGGCTAGAGAAGATGTGTATGATTGCAAGGCGGTTACTCAGAGACTTAGAGCTATGCTTCAGTCAGCAGATGAACAAGTCAGGAGCTTGAAGAAGCAGAGTACATTTCTTAGCCAGTTGGCTGCGAAGACAATTCCAAACAGCATTCATTGTTTGTCGATGCGCTTAACAATAGATTACTATCTCCTCCCGTTGGAGAAAAGGAAGTTCCCGAGGAGCGAGAACTTGGAAAATCCAGAGCTCTACCATTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGTGAACTCAACCATCATGAATGCTAAGGAGCCTGAGAAGCATGTTTTCCATCTTGTGACTGATAAGTTGAACTTTGGAGCCATGAACATGTGGTTTTTGCTGAACCCTCCTGGGAAGGCCACCATCCATGTTGAGAACGTAGATGAATTTAAGTGGTTGAACTCATCATACTGTCCTGTTTTACGGCAACTTGAGTCTGCAGCCATGAAAGAGTATTATTTCAAAGCTGACCGCCCCACCACTCTCTCTGCGGGTTCTTCAAACCTAAAGTATCGTAACCCCAAGTACCTCTCCATGCTGAACCACTTGAGATTTTATCTCCCACAGGTCTATCCAAAGTTGGATAAGATATTTTTCCTTGATGATGACATAGTCGTGCAGAAAGATTTGACGGGATTATGGGATGTTGATCTTAATGGGAAGGTCACCGGTGCAGTGGAGACCTGTGGGGAGAGTTTTCATCGTTTTGACAAGTATCTTAACTTTTCAAATCCACATATCGCTCGGAACTTCGATCCAAATGCATGTGGCTGGGCATATGGAATGAACATCTTTGATCTGAACGAGTGGAAGAAGAAAGATATCACTGGGATCTACCACAGGTGGCAAAACATGAACGAAGACCGGGTTCTTTGGAAGCTTGGGACACTTCCACACGGCCTCTTGACCTTCTTCAAGTTGACGCATCCCCTTGACAAGTCGTGGCATGTCCTCGGATTAGGATACAACCCAAGCATTGACCGCTCAGAGATAGATAATGCAGCCGTTGTTGATTACAACGGTAACATGAAGCCATGGCTGGAGTTGGCAATGACCAAGTATGACCAAGTACAGACCATATTGGACAAGGTATATAAAGTATGA
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| Protein seq | SIKDSAVLGKYSIWRKENENENSDLTVRLMRDQIIMARVYSVLAKSKNKNDLYQELQTRIKESQRAVGEATADSDLHHSAPEKVRVMGQLLSKAREDVYDCKAVTQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNSIHCLSMRLTIDYYLLPLEKRKFPRSENLENPELYHYALFSDNVLAASVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVDEFKWLNSSYCPVLRQLESAAMKEYYFKADRPTTLSAGSSNLKYRNPKYLSMLNHLRFYLPQVYPKLDKIFFLDDDIVVQKDLTGLWDVDLNGKVTGAVETCGESFHRFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLNEWKKKDITGIYHRWQNMNEDRVLWKLGTLPHGLLTFFKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVDYNGNMKPWLELAMTKYDQVQTILDKVYKV |
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| Function | Polygalacturonate 4-alpha-galacturonosyltransferase [UniProtKB/Swiss-Prot:Q9LE59] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0531800 | OsNip_09t0531800-01 | Chr09 | 20857047 | 20861083 | - | RAP2018-11-26 | ||
| CDS seq | TCGATCAAAGATTCTGCTGTCCTTGGGAAATACAGCATTTGGAGAAAGGAGAATGAGAATGAGAACTCAGATTTGACAGTTAGATTGATGAGAGACCAGATTATTATGGCACGTGTTTATTCTGTGCTTGCTAAATCAAAGAACAAGAATGATCTTTATCAAGAGCTGCAAACCAGGATCAAGGAAAGCCAGCGGGCTGTTGGAGAGGCTACTGCTGATTCTGACCTTCATCATAGTGCACCTGAGAAAGTCAGAGTAATGGGTCAACTTCTATCCAAGGCTAGAGAAGATGTGTATGATTGCAAGGCGGTTACTCAGAGACTTAGAGCTATGCTTCAGTCAGCAGATGAACAAGTCAGGAGCTTGAAGAAGCAGAGTACATTTCTTAGCCAGTTGGCTGCGAAGACAATTCCAAACAGCATTCATTGTTTGTCGATGCGCTTAACAATAGATTACTATCTCCTCCCGTTGGAGAAAAGGAAGTTCCCGAGGAGCGAGAACTTGGAAAATCCAGAGCTCTACCATTATGCACTTTTCTCAGACAATGTCTTGGCAGCATCTGTTGTGAACTCAACCATCATGAATGCTAAGGAGCCTGAGAAGCATGTTTTCCATCTTGTGACTGATAAGTTGAACTTTGGAGCCATGAACATGTGGTTTTTGCTGAACCCTCCTGGGAAGGCCACCATCCATGTTGAGAACGTAGATGAATTTAAGTGGTTGAACTCATCATACTGTCCTGTTTTACGGCAACTTGAGTCTGCAGCCATGAAAGAGTATTATTTCAAAGCTGACCGCCCCACCACTCTCTCTGCGGGTTCTTCAAACCTAAAGTATCGTAACCCCAAGTACCTCTCCATGCTGAACCACTTGAGATTTTATCTCCCACAGGTCTATCCAAAGTTGGATAAGATATTTTTCCTTGATGATGACATAGTCGTGCAGAAAGATTTGACGGGATTATGGGATGTTGATCTTAATGGGAAGGTCACCGGTGCAGTGGAGACCTGTGGGGAGAGTTTTCATCGTTTTGACAAGTATCTTAACTTTTCAAATCCACATATCGCTCGGAACTTCGATCCAAATGCATGTGGCTGGGCATATGGAATGAACATCTTTGATCTGAACGAGTGGAAGAAGAAAGATATCACTGGGATCTACCACAGGTGGCAAAACATGAACGAAGACCGGGTTCTTTGGAAGCTTGGGACACTTCCACACGGCCTCTTGACCTTCTTCAAGTTGACGCATCCCCTTGACAAGTCGTGGCATGTCCTCGGATTAGGATACAACCCAAGCATTGACCGCTCAGAGATAGATAATGCAGCCGTTGTTGATTACAACGGTAACATGAAGCCATGGCTGGAGTTGGCAATGACCAAGTATGACCAAGTACAGACCATATTGGACAAGGTATATAAAGTATGA
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| Protein seq | SIKDSAVLGKYSIWRKENENENSDLTVRLMRDQIIMARVYSVLAKSKNKNDLYQELQTRIKESQRAVGEATADSDLHHSAPEKVRVMGQLLSKAREDVYDCKAVTQRLRAMLQSADEQVRSLKKQSTFLSQLAAKTIPNSIHCLSMRLTIDYYLLPLEKRKFPRSENLENPELYHYALFSDNVLAASVVNSTIMNAKEPEKHVFHLVTDKLNFGAMNMWFLLNPPGKATIHVENVDEFKWLNSSYCPVLRQLESAAMKEYYFKADRPTTLSAGSSNLKYRNPKYLSMLNHLRFYLPQVYPKLDKIFFLDDDIVVQKDLTGLWDVDLNGKVTGAVETCGESFHRFDKYLNFSNPHIARNFDPNACGWAYGMNIFDLNEWKKKDITGIYHRWQNMNEDRVLWKLGTLPHGLLTFFKLTHPLDKSWHVLGLGYNPSIDRSEIDNAAVVDYNGNMKPWLELAMTKYDQVQTILDKVYKV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.192224 | 0.000000 | 0.498260 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0531900 | RBH | 1.541830 | 3.567712 | 16.965765 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36180 | SBH | 0.000000 | 0.051927 | 0.155062 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0531800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0017500 | SBH | 0.422100 | 27.875549 | 9.089949 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0017570 | RBH | 0.243616 | 3.508705 | 7.067509 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0017780 | RBH | 0.479681 | 20.840847 | 13.502902 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0017560 | SBH | 0.137586 | 0.389105 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017700 | SBH | 3.431101 | 23.543016 | 22.251509 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0348900 | SBH | 7.897413 | 19.588269 | 27.861184 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0017540 | SBH | 0.499715 | 1.315116 | 2.554909 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0337700 | SBH | 11.0629325 | 15.3938115 | 34.0940105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0017590 | SBH | 0.152801 | 0.364387 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017370 | SBH | 0.609676 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0017400 | RBH | 6.118800 | 30.979057 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0017320 | RBH | 0.509735 | 0.0 | 0.271440 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0017450 | SBH | 0.181567 | 0.680905 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017840 | RBH | 0.840037 | 7.462083 | 17.425354 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017690 | RBH | 1.184299 | 54.151993 | 33.843975 |
