Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0520500 | OGI:09059280 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:20330883-20332328 | ||||||||
| Gene Symbol | ZPR3, OsZPR3 | ||||||||||
| DNA seq | AGCCAAACAAAATCTAGTTAACTCTCACAAACTTCCAATGTACAAGCATTATGCCACAAGAACACACAGAAGAGCTCCAAAAACCTAGTGGCTGTCTGGCTGATCATAACTGGCCTGACACGAAGAAACCAAAGCTGATAGCACCGGTAGCTAATATATAGCTAGAACCAGCCAGCCAACCATGATCACCAAGAGACCAAGAAAGCTACGGTTTTATAGGCAAACCAGCACAAAAACACCGCACAAGCTGTAGTAGCTAGCAAGGAGGCGGCGAGTGCTCAGTTCAGCAGCTGGAGGCGGCGGCCGCCGTCGTCGCCGGCGACGATGTGTTGCGCAGGTCGGCGCGCAGCGCGAGGTTCTCCCGGTGGAGCGCGCTGGCCTTCTCCCTCAGCCTCTCGTTCTCCTCCAGGATGCACCTGTTCTCCAGGTAGAGCTTCAGGTTCACCATCTCCATCTCCATTCCATCAGATCTCCTCATGGTCTCTCTCCTCCTCCTCAGCCTTAGCCTGTGTATTTATGTTCAACCAAGGGATGGAGGTTTAGCAATAGATTGTGTTCTAGTTGATACATTTTTTTTAGTATAAGTTAGACGCGCACTTGCGAAAGGGCATGTAGCCTAGTGGTTGCAGTGATCTGAGTAGCACCCTAAAGTCTAAGTTCAAATCTCCATAGGAGCGAATTTCGGATTGGTTATTTGAGGGGCTAAGCTTCCAATATAAAAAGGTTGCATACATCCTGTTGGGTGTAGAGGCCGGGTAAAAAAATACCCTCCTCTAAAAAAAAGTAAGTTAGACACGCACACCCACACATGCTTCGACTATAGTTTGTTTGCTATTAAGATTTTTTTTCCATTTCCGTTGAGTCTATAATAATGTATTGCGATACATAGGTTGAAAGTATCTTCCATTATCTTTAAAAAGAATTTAAGAGAAGCATATGCGATGGCAACATGCATTTTTTTTTAAAACAAAAAGAGTTAGAATCCGGCCTCTACATCCAAAACAGATGTAGACTGTCATGAAGTATACAAGAGTACTTAGACCCGAACTTCTTACGATAAGGCTTCAGCAAAGAAATAAAAAGGAAACACTGCAACACGCATATAAGTAAGCACAGGTGCAGATGCATAAACAAGTTCATGAATCCATCAGTCCTCAGACTACAAAAATCTCACCAAATTAAACAAAGTTGGGATAGATGCTATTACCTCTTCCTCCTGAGAGCCATGGGGGCATGAGCCGGCTGCTTTCTCTGCTGCTGCTGTTGATTGTCCTGCCTGAATACAACCAAAGACAGATAGATCTTATTCTTGCTGTTCCAGGAGCCAGAACACATGCTAGCTGCTGGATATAGATACAGTGTTTGTTCCTAGATTCCAGTCATCTGTGGAGCTCAAGGAGTTTGGAATGATCCCAGCAATTGCAGATAACACGATATATATAACAT
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| CDS seq | ATGTGTTCTGGCTCCTGGAACAGCAAGAATAAGATCTATCTGTCTTTGGTTGTATTCAGGCAGGACAATCAACAGCAGCAGCAGAGAAAGCAGCCGGCTCATGCCCCCATGGCTCTCAGGAGGAAGAGGCTAAGGCTGAGGAGGAGGAGAGAGACCATGAGGAGATCTGATGGAATGGAGATGGAGATGGTGAACCTGAAGCTCTACCTGGAGAACAGGTGCATCCTGGAGGAGAACGAGAGGCTGAGGGAGAAGGCCAGCGCGCTCCACCGGGAGAACCTCGCGCTGCGCGCCGACCTGCGCAACACATCGTCGCCGGCGACGACGGCGGCCGCCGCCTCCAGCTGCTGA |
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| Protein seq | MCSGSWNSKNKIYLSLVVFRQDNQQQQQRKQPAHAPMALRRKRLRLRRRRETMRRSDGMEMEMVNLKLYLENRCILEENERLREKASALHRENLALRADLRNTSSPATTAAAASSC |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0520500 | OsNip_09t0520500-01 | Chr09 | 20330883 | 20332328 | - | RAP2018-11-26 | ||
| CDS seq | ATGTGTTCTGGCTCCTGGAACAGCAAGAATAAGATCTATCTGTCTTTGGTTGTATTCAGGCAGGACAATCAACAGCAGCAGCAGAGAAAGCAGCCGGCTCATGCCCCCATGGCTCTCAGGAGGAAGAGGCTAAGGCTGAGGAGGAGGAGAGAGACCATGAGGAGATCTGATGGAATGGAGATGGAGATGGTGAACCTGAAGCTCTACCTGGAGAACAGGTGCATCCTGGAGGAGAACGAGAGGCTGAGGGAGAAGGCCAGCGCGCTCCACCGGGAGAACCTCGCGCTGCGCGCCGACCTGCGCAACACATCGTCGCCGGCGACGACGGCGGCCGCCGCCTCCAGCTGCTGA
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| Protein seq | MCSGSWNSKNKIYLSLVVFRQDNQQQQQRKQPAHAPMALRRKRLRLRRRRETMRRSDGMEMEMVNLKLYLENRCILEENERLREKASALHRENLALRADLRNTSSPATTAAAASSC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 1.981189 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g34890 | RBH | 0.000000 | 0.0 | 0.507273 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0520500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016950 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016960 | RBH | 0.000000 | 0.0 | 0.457533 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0017180 | RBH | 0.0 | 0.0 | 0.952658 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016930 | RBH | 0.039904 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017070 | RBH | 0.0 | 0.0 | 6.502569 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0340800 | RBH | 1.0740515 | 0.2973775 | 6.660497 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016920 | RBH | 0.139217 | 0.0 | 0.483843 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0328900 | RBH | 2.046934 | 0.284755 | 2.400694 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0016940 | RBH | 0.466145 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016730 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016790 | RBH | 3.394421 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016690 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016800 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017220 | RBH | 0.165154 | 0.0 | 2.210276 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017060 | RBH | 0.000000 | 0.0 | 1.825706 |
