Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0506450 | OGI:09057210 | 12/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:19596349-19597750 | ||||||||
| Gene Symbol | OsFbox496, Os_F0287, OsFbox497, Os_F0433 | ||||||||||
| DNA seq | GATTTCATCAACAAATTTGATCGCATTGTGAAAAACCACTCAGGCATTGGCATCAAGTCGGTAAACTTTGAATATGATAGTTCTTACAATACTAGAAGGAGCACTAGCATCAGCCATCATTTTGATAGTTGGCTTCATATTGCTATTACACCATGGATCGAAAAACTCTCCCTTAGGCTATCTCATTATTCATAAAATGTGGAGTACAACTTACCATGCACAATTCTGTCTGATGGGAGAGCAAGCTCAATGCGACATCTTTATCTTGGCAGTTGTAGCTTCCATCCCACAATCAACCTTGACTTGAGAAGCCTGATGAAGTTGCATCTGTTTAATGTCCATATTACAGGAGATGAGTTAGGGTGCCTTCTCTTCAGTTGTTATGCTTTGGAGTGGTTGGAACTTGAGCATTGTGATGAAATAGTTTGCATGAAGGTACCTTGTCAGTTGCAACGCCTCAATCACCTGAAAGTGTTTGAATGCAGAATGCTGCAAGTAATAGAGAATAAGGCTCCAAATATTTGCAGTTTTGATTTTGGAGGTAAACACGTACAACTCTTGCTTGGTGAATCGTTGCAGATGAAGACACTATCTTTGCAATACTATTGCAACGCTGTCTATTATGCTCGTGTAGAGTCTATACCCAATGTGCCAAATCTTGAAACTCTCACCATTTGCTCGTATCACGAGGTACACTCAAAAACTCGAAAATACACTTGCGGTATTCATATAACAATACTTACACATTAGAAGAATGTCTCCAGTCTGATGATCATCATATTTATGCAGATGGTTAACACACCAATGTTGCCTAGCAAATTCCTCCATCTCAAGTGTTTGACTATCGATCTTGCTGAAGTTTCCCATGCATATGATTATTTCTCTCTAGTTTCTTTTCTTGATGCTTCTCCTTTCTTGGAGACTTTACTTCTGGGTGTAAGATAATTTTCATTCTGCAAAGTTATCTAGTGTCTATGGTAGTAACCATCAATTAAAGTATATTTGGCTTTTCATCTCCAGATACCAAAGGACAGCATGGAGGATGACTCAATTTTTGGAGATTCCTCAAATATGAGGCAGATGCAAGAATATCGTCATGACAACCTCCAGAGTGTGGTGATCACTTGTTTCTGCTCCGCGAAGAGCTTGATCGAGCTAACATGTTGTATTCTTGACTGTACAACGTCACTTGAGTACCTTACACTGGATACTACTCGTGGTGTTTATAGCTGTTCTACAGGTAAACACAGCCAATGCTTTCCTATGGACAAGGCCATGATCCCTAAAGCCAACAGGGCTATGTTGGCTATCGAAACATAAATTGAACGAAAAGTTCCTTCCACAGTTAAGTTAAATGTTGTGAAACCTTGCCCCCGTTGCCATATAATTGAATCTTAGTTGT
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| CDS seq | AATGTGGAGTACAACTTACCATGCACAATTCTGTCTGATGGGAGAGCAAGCTCAATGCGACATCTTTATCTTGGCAGTTGTAGCTTCCATCCCACAATCAACCTTGACTTGAGAAGCCTGATGAAGTTGCATCTGTTTAATGTCCATATTACAGGAGATGAGTTAGGGTGCCTTCTCTTCAGTTGTTATGCTTTGGAGTGGTTGGAACTTGAGCATTGTGATGAAATAGTTTGCATGAAGGTACCTTGTCAGTTGCAACGCCTCAATCACCTGAAAGTGTTTGAATGCAGAATGCTGCAAGTAATAGAGAATAAGGCTCCAAATATTTGCAGTTTTGATTTTGGAGGTAAACACGTACAACTCTTGCTTGGTGAATCGTTGCAGATGAAGACACTATCTTTGCAATACTATTGCAACGCTGTCTATTATGCTCGTGTAGAGTCTATACCCAATGTGCCAAATCTTGAAACTCTCACCATTTGCTCGTATCACGAGATACCAAAGGACAGCATGGAGGATGACTCAATTTTTGGAGATTCCTCAAATATGAGGCAGATGCAAGAATATCGTCATGACAACCTCCAGAGTGTGGTGATCACTTGTTTCTGCTCCGCGAAGAGCTTGATCGAGCTAACATGTTGTATTCTTGACTGTACAACGTCACTTGAGTACCTTACACTGGATACTACTCGTGGTGTTTATAGCTGTTCTACAGGTAAACACAGCCAATGCTTTCCTATGGACAAGGCCATGATCCCTAAAGCCAACAGGGCTATGTTGGCTATCGAAACATAA
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| Protein seq | NVEYNLPCTILSDGRASSMRHLYLGSCSFHPTINLDLRSLMKLHLFNVHITGDELGCLLFSCYALEWLELEHCDEIVCMKVPCQLQRLNHLKVFECRMLQVIENKAPNICSFDFGGKHVQLLLGESLQMKTLSLQYYCNAVYYARVESIPNVPNLETLTICSYHEIPKDSMEDDSIFGDSSNMRQMQEYRHDNLQSVVITCFCSAKSLIELTCCILDCTTSLEYLTLDTTRGVYSCSTGKHSQCFPMDKAMIPKANRAMLAIET |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0506450 | OsNip_09t0506450-00 | Chr09 | 19596349 | 19597750 | + | RAP2018-11-26 | ||
| CDS seq | AATGTGGAGTACAACTTACCATGCACAATTCTGTCTGATGGGAGAGCAAGCTCAATGCGACATCTTTATCTTGGCAGTTGTAGCTTCCATCCCACAATCAACCTTGACTTGAGAAGCCTGATGAAGTTGCATCTGTTTAATGTCCATATTACAGGAGATGAGTTAGGGTGCCTTCTCTTCAGTTGTTATGCTTTGGAGTGGTTGGAACTTGAGCATTGTGATGAAATAGTTTGCATGAAGGTACCTTGTCAGTTGCAACGCCTCAATCACCTGAAAGTGTTTGAATGCAGAATGCTGCAAGTAATAGAGAATAAGGCTCCAAATATTTGCAGTTTTGATTTTGGAGGTAAACACGTACAACTCTTGCTTGGTGAATCGTTGCAGATGAAGACACTATCTTTGCAATACTATTGCAACGCTGTCTATTATGCTCGTGTAGAGTCTATACCCAATGTGCCAAATCTTGAAACTCTCACCATTTGCTCGTATCACGAGATACCAAAGGACAGCATGGAGGATGACTCAATTTTTGGAGATTCCTCAAATATGAGGCAGATGCAAGAATATCGTCATGACAACCTCCAGAGTGTGGTGATCACTTGTTTCTGCTCCGCGAAGAGCTTGATCGAGCTAACATGTTGTATTCTTGACTGTACAACGTCACTTGAGTACCTTACACTGGATACTACTCGTGGTGTTTATAGCTGTTCTACAGGTAAACACAGCCAATGCTTTCCTATGGACAAGGCCATGATCCCTAAAGCCAACAGGGCTATGTTGGCTATCGAAACATAA
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| Protein seq | NVEYNLPCTILSDGRASSMRHLYLGSCSFHPTINLDLRSLMKLHLFNVHITGDELGCLLFSCYALEWLELEHCDEIVCMKVPCQLQRLNHLKVFECRMLQVIENKAPNICSFDFGGKHVQLLLGESLQMKTLSLQYYCNAVYYARVESIPNVPNLETLTICSYHEIPKDSMEDDSIFGDSSNMRQMQEYRHDNLQSVVITCFCSAKSLIELTCCILDCTTSLEYLTLDTTRGVYSCSTGKHSQCFPMDKAMIPKANRAMLAIET
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.165931 | 1.790363 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g32910 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0506450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015850 | SBH | 0.0 | 0.000000 | 0.374413 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0015860 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0016080 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015830 | RBH | 0.142468 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0015960 | RBH | 2.206522 | 0.0 | 4.207196 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0328200 | RBH | 3.0529705 | 0.8424045 | 0.880403 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0015820 | RBH | 0.042507 | 0.0 | 0.245926 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0317900 | SBH | 0.0403415 | 0.0963395 | 1.4156705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0015800 | RBH | 0.027323 | 0.039906 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0015670 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0015730 | RBH | 1.076460 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0015590 | RBH | 0.198579 | 0.0 | 0.105989 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0015730 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G016130 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015920 | SBH | 0.0 | 0.0 | 0.0 |
