Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0493600 | OGI:09056070 | 4/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:19119353-19121206 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATAGAATTTAGTCCAAATACTACAAAGATCCCTTGAAATTCCTTCATTCCAAAGGATGCCTAAGTTGAACTTGCACACTGCATCCTCGCGTCTGAAATCTGAACTGGCACAATGTGTTACATCTTGGCCTCTACTCCTCTTGGCACCAATAATTATCGTCTCTAATGTGATAGTTAATACAATGATTCACGTAGTCTAACAACAGATAAGGAGAATGTTGGCATCATGGTGCCTCACTTCTGAACTTGGCGAGCAGTCACCAGGTGACATTGGCGAGTTAGACCATGCAAATCTATAGCTCCGAGCAGTTCGTCACATATGAGCAGGAAGACGTGGAGAATCCATGGCGCAATGCTGCTCGGTTTTTGTGGAAACCTGCAATTTCTCCAGGAGAAGATGAAAACAGCAGTCACTGCAACTGCTTCTCAAAAGGGAGTTCAATGGAGGTTGCGTTGCCATAGAACTCTTCCAAGTTGTAGAATGCTCGCTGTTGCGGAAGAAATATATGGACAACAACATCGCCTGTTAAGAGTGAAAAGGGTAATAGGTCAGCCGCAGATTTGCGCATCGAAAAATCTAACCATTTTACGTATGACTGTAGAGTATAGAAGACTAACCGAAGTCCAGCAAGGTCCATGAATTTGGTTTTGTATCACCAGATGCAACTATGCTAAACTGCTTCTCACCGATGTCTCTCATCTTGGAGCTGCAATGCAAAATGTAATCCTGAATATTGCATGCCAAGTTACACGAGTCAAAACTGAAGTCGTAATATGAAATCAAGCAGAGCATTTTTCAAGTTTCTCTTTGGTTGAAATTACATGCACAATTAGTTGTGAACAAGTAACTTAAACTGATGTTTTGAAGCGAACCTGATAGCATCAATCTGTGCATTTGAGAAAGCAGTGAGGATGATGAAGAACCTCGTCCAGTAAACGAGCGGCTTCACAAATAGTACACGAATATCCGCAGCCTTCACCTCGCTTGCAACTTTAGCTAGGGAGACAGCAACTGAAGAGAACACAAAGATATGTTCAAGCTTCAGGGATTTTGTATTTTGGACCGTTAAAGAAAAAAATATTATAAAGCAAGTGAGTACGAATCTATATATGACTACAATGAACAATCAGCAACAGAGAATTCAATTCAGCACATATAGCAAGCAGGACATTCGATTTGATTCTTTTGATAGGATGACAACTTCAGCAGGATACATTCATGAATAATGTTCTCAGGGTTTTTGTCAGTAATTCTTGAACAAATTTGTTCAGTTTCTAGATTGGCTAGGCATAAGCAGACTGGAGTTAGAAAGAGAGGAGTGGAGAGGCAACATACAGGACAAGCACTCGGCGTCATCGTCGGCATCAATGCCCGGAGCCCCACCGGCGTTGTACACCACCTCGCCATGCTTGCTGAGCAAATCCTCGAGCAGGTTGTCCGCGTCGTCCCCTCTCCCAGAATTCTGCTCGGAGCTCATAACCAACAGAGATCAGCATAGAGCTTCCCAACAAACAAGACGGGCGCGCGGGAGAAACGAAATTGTTCGAGAGGACTACTACCACATTCGACGACGAGGAGGACGACGGCGAGCGAGCCCGGCAGGGGAGGGAGCGCGTGTGGGGCAGGTCGCTCCTCAGCCGGTGGTGGTGGAGGAGGGGTCCTCCCCCGCCGCCGCCGGCAGCGCGCCGCGGCCATGGGGCCAGCGCGGCGGCGGCGGCCCCCGGTGGCGCGCATACGAGGGCGTGGGTCTGGATGGCGGCGGCTCTCATGGTGGCCTTTGCCGCGGCTGCGGGATTCTCGACGGGGAGGAAGACGAAGAAGACGAGGTTGTAGTGAGACAAACGGCAAGAGGG
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| CDS seq | ATGAGAGCCGCCGCCATCCAGACCCACGCCCTCGTATGCGCGCCACCGGGGGCCGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCGGGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCACACGCGCTCCCTCCCCTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGAATTCTGGGAGAGGGGACGACGCGGACAACCTGCTCGAGGATTTGCTCAGCAAGCATGGCGAGGTGGTGTACAACGCCGGTGGGGCTCCGGGCATTGATGCCGACGATGACGCCGAGTGCTTGTCCTTTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTTTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGAGTTCTATGGCAACGCAACCTCCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGA
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| Protein seq | MRAAAIQTHALVCAPPGAAAAALAPWPRRAAGGGGGGPLLHHHRLRSDLPHTRSLPCRARSPSSSSSSNVNSGRGDDADNLLEDLLSKHGEVVYNAGGAPGIDADDDAECLSFAVSLAKVASEVKAADIRVLFVKPLVYWTRFFIILTAFSNAQIDAISSKMRDIGEKQFSIVASGDTKPNSWTLLDFGDVVVHIFLPQQRAFYNLEEFYGNATSIELPFEKQLQ |
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| Function | Protein Iojap, chloroplastic [UniProtKB/Swiss-Prot:Q41822] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0493600 | OsNip_09t0493600-01 | Chr09 | 19119353 | 19121206 | - | RAP2018-11-26 | ||
| CDS seq | ATGAGAGCCGCCGCCATCCAGACCCACGCCCTCGTATGCGCGCCACCGGGGGCCGCCGCCGCCGCGCTGGCCCCATGGCCGCGGCGCGCTGCCGGCGGCGGCGGGGGAGGACCCCTCCTCCACCACCACCGGCTGAGGAGCGACCTGCCCCACACGCGCTCCCTCCCCTGCCGGGCTCGCTCGCCGTCGTCCTCCTCGTCGTCGAATGTGAATTCTGGGAGAGGGGACGACGCGGACAACCTGCTCGAGGATTTGCTCAGCAAGCATGGCGAGGTGGTGTACAACGCCGGTGGGGCTCCGGGCATTGATGCCGACGATGACGCCGAGTGCTTGTCCTTTGCTGTCTCCCTAGCTAAAGTTGCAAGCGAGGTGAAGGCTGCGGATATTCGTGTACTATTTGTGAAGCCGCTCGTTTACTGGACGAGGTTCTTCATCATCCTCACTGCTTTCTCAAATGCACAGATTGATGCTATCAGCTCCAAGATGAGAGACATCGGTGAGAAGCAGTTTAGCATAGTTGCATCTGGTGATACAAAACCAAATTCATGGACCTTGCTGGACTTCGGCGATGTTGTTGTCCATATATTTCTTCCGCAACAGCGAGCATTCTACAACTTGGAAGAGTTCTATGGCAACGCAACCTCCATTGAACTCCCTTTTGAGAAGCAGTTGCAGTGA
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| Protein seq | MRAAAIQTHALVCAPPGAAAAALAPWPRRAAGGGGGGPLLHHHRLRSDLPHTRSLPCRARSPSSSSSSNVNSGRGDDADNLLEDLLSKHGEVVYNAGGAPGIDADDDAECLSFAVSLAKVASEVKAADIRVLFVKPLVYWTRFFIILTAFSNAQIDAISSKMRDIGEKQFSIVASGDTKPNSWTLLDFGDVVVHIFLPQQRAFYNLEEFYGNATSIELPFEKQLQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.730229 | 6.695966 | 1.527433 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g32030 | RBH | 6.840107 | 4.563096 | 0.358894 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0493600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015140 | RBH | 2.453094 | 4.081823 | 2.772770 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0015130 | RBH | 1.226214 | 0.000000 | 1.929138 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0015350 | RBH | 0.601712 | 0.0 | 4.171225 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015190 | SBH | 1.594265 | 0.084462 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0015300 | RBH | 92.353806 | 5.953104 | 4.273045 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0015120 | SBH | 2.961598 | 0.000000 | 0.233764 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0310300 | RBH | 9.716056 | 18.9217645 | 12.704187 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0015090 | SBH | 1.449509 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0014950 | SBH | 4.502866 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0014990 | SBH | 32.727436 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0014860 | SBH | 6.665013 | 0.0 | 2.510763 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0014960 | SBH | 0.105941 | 0.432305 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015450 | RBH | 3.331125 | 0.0 | 1.580593 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015250 | SBH | 0.661360 | 1.842017 | 1.389710 |
