Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0491852 | OGI:09055940 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:19020431-19024330 | ||||||||
| Gene Symbol | CCR33, OsCCR33, CCR1, OsCCR1, OsCCR14, CCR14 | ||||||||||
| DNA seq | ATGAAAGAAAAATCGGTATTAACTGTAGCTATGATCAACTTTTTGTAAGTATACATGATACCGGCCTCCTAAGTATCAGTACAAGATACATAAAAAAAACATGCATTAACTTTTTTTACAAGGTGCATCCATACTAGTAAATGGGGAAGATTAATTAGCTGAGAATTGGGACCAAGGCCATCTTCAGTTCATTCCTGGACAGCGAAATAGGGAAGCCGGCAAGGTCGCCCATCTAGAAGGCCTGCCTTCTCAAAGAACTCGATGCTGTCCGCAAGTGTCTCCTCCCGTTTCCTTGGGTTCCAGCCCAGATTCTTCAGTTTCTCTGATGTCACTTCGACCTTGTAATCCACATCAACCATCCTGTCAAACAACAAAGCTGCTGCTCAAACTAATCTTGTTCATGTCGTGAGCACAATTGCACAAAACACCCTTGAGAGTTGAGACTAACTCTGGTATTATATATAGGATGATGCTGATCACAATGATAAGGAGATTTCACTTACTTGTCTGCATAATTGTAGTTAGGGTACATGTTCTTCATCAGATCCAATAAATGTTTCAGGTCCATCTGTTCTAGAGTGCATAAGTACCGCTCAGATGGCCCTGCCTTGTGGTATGCTAGAAGTAAAGCATCAGCAACATCACGGACATCTACCATGGGCCAGAATTTGTTGTTCATAACGTGAGGGCCGTCTCCTCCTGCATTCCAATCAAACTAATTAATCTTAAAACCAAAGTCCAAGATTTAAAATCAACTTGGAAGGTTGAAGTATTTATACTTGCTCTTAGATCCTTGGTGCTTCCCCGTTTAAATTATTTGTCGTTTTAGCTATGTCCAAAGTCAAATATTTTTAACTTTGACGATTATTTTCTTTAGAAGTTTATATAGTTTTCAGCATATAAAATTATGTATTATGAAAGTATTTCTTATGGTGAATCTAAATACATAAATATTATGATATTTTTAAACTATATAAATTTCTAAAAAATTATGATTAAAGTTAAAAATGTTTGACTCATGATAAAGATAAAACGATAAATAATTTAAAACGGATGAAATAGTTAGCAGCGGGGAGGGAATGCTATAGAAACTATCATGTATAAGAATCTGTCCCATGGAGATTATGGAGTTATGGATTTTGCGTTCCATGAATTTTCAAACTACAATTTCTCTAAAAATTTCTGTATCTGCTATTTTTTAGTTTGCAACATATAAAAGTTTAATTCGCCCCTTTTTACATATTTGACCATAATATGTCCAATCATCTGTAAAGAACAAAGAATTAAAATGGTGAACCCTTAATCATATAGAGGAGCACTTTGCTGCTTGTGTTGATTTCCACTGTCTGCAACATTGGGCCAAAAACAATTCCAGGACAAATCGTAAGTACATGAAGCCCATTTTTCTTTCCGTATTCCAGGGCCATCTCTTCAGCTTCGATTTTGGCAACAGAGTACCAATCCTGCCAAGTGCCAACACACCAAGTGAAGAGTAGTATATTAGTCCAAAGAAGCAAGAAGTACTTCCTCCGTTTCACAATATAAGTCATTCTAGCATTCCCCACATTCATATTGATGTATGCCTAGAATATCAATATGAATGTGGGGAATGCTAGAATAACTTACATTGTGAAACGGATGGAGTACTTAATTATTTAATGCTTCTCACAAAATAAAAAGAGCTGAAGAACTAATTAGTACTACATGGATAAAAGGATTAGATACATCTAAACAATTTCAGGTGCACATTCACGTGTTAACCAGGGTTTACACTTTCGATTTGGGTGATTTCGGTAGCACTGAAAAAAAATTTCGGTTCATACATAGATTTGCTGGTGGGGTCCAAAATTACAAAAATTTCGAACCGAAGTTGCAATCACTGGTGTTAACATGTGTTCTGGGATGGATCATGGATGCCTGGTGCTTAATTTGGCGATTTCTAACCTCATTTTCAATGCAGAGCTTCTTGTCTGACCAGGAAGTCTCATCTTTCGGCATATCTTGAGGCCAGCTCGGGTTAAGGCAAACAGTAGCAATGGAGGAGGCCACGACGAGTTTCTGAACGCTCGCAGCTGAGCAAGCCTCGAGTACATTTCTGGTGCCTTCCACGGTAGGAGCCATCATCTCCTTCTGAATATATACTCGTGTTTAGCACACAAGATAAGCAGAGATGCAGATTGCAGAGGGACAAAAACACGAGAGGATTTTGGGTTGTTGAGATAGATTACTTGCCTGTGGATCAACGATCTTTTCTTCCGGCACCGGAGTGGCCAGATGGAAGACACCCTCGCAGCCGGCGAACGCCGCCGTCAGTGAGCCGCAGTCGAGCACGTCGGCCTCGAACAGTTGCAGATTCTCCGGAGCATTCTCCAGTTGCTTCAGAAACGCGTTCTTGGGATCGTCTGAAACAAGAAAAAGAGAAACACAATCCAAAAGGGGAACAAGAAAAATGAGCACCTAAAGATGAGTTCTGTTTTCTGAGGGAACGGGCAGCTCTGCCATTTTAATTATAGAGTTAATTTTATTTGGACCATCTTTTATTACCGATGTTTCGCTTTGGACCACCTTAGGACCAATGTTTTCACTTTGGTCCGTGTATTTTTACCTTTATTTCACATTGGACCACCTTCACTCTTTTATCCATCTACATCCAACTTGTAATATGTCGAAGAAATAGTCTTACATATAGCTGTGGCAGTTCATTGACGAGTAGGAGACGGCGTAATCGAGATCGTTCATATGCTTGAGAAGAGAGTTGGGTGGTCCAAAGTGAAACAAAGGCAATTTTACCCAGTTCAAAATGAAAATATTGCTTAAAGGGTGGTCCAAAGTGAAACATCGGTAACAAAAGGTGGCCTGAAGTGAAATTTAATCTTAATTATACAAGAGAAAACAAAATTTCAACATACATGGTTCCAACAAACCAACAGGGTGACACAAAGAGATGCCACTAAAAGAGGTGAGGGGCATAAGTAATTTGAGAAAATGCAAAGTAACTAACAGTATCAGACAGTTGTAAAGACATCTAACCAAACTTTGCTTCCTGGTAGGCTTTGCACATGGCGATGATGGAATTTACTACTTGTTGCACTGAACCATATGCACCATTGAAAACTCGATATCTTTGAAGCCAAATTCCACCCATATTGTGCAGATGATTAAGCCGTCAAAAAACACCTCCTTTGCTCTTTGATCTTTTGCAATAGATGATGAGTTTTCTTACCGTCGGTTACCCACGGTAATTGGGTTTACTGTTTGTGTACAGTAATGGTAACCACCAGAGGGTCTGTTTGGTGGGTTCGCATCAGGGGGTAAATGGCAGAGGGGAACAGTGAATTGTGAGTAGTGCTACAGTGTTTTGCCATTGCTACACTAGCAAACAGCGAAAAATCACCGAGTTACTTTATTGGAATTACTGTAGCGATTGATCTCGGCATCAAACTTGATTTGACGGCTGTAAGTAGCCAACGTGACTGCAATAGAGTCAGCAGCTGCAGCAGTATAGCAGCAGAACAGGGGCAGACATATCAACTAATTTTTCTTAAAAAATTATAACTTGATAAAATTTGTCCATTTTTTCTCCATTTTGCACCGTTACCGCTCTAGGAAACCCCGAAACCGACGAGAAAGATGCAGTACAAAGATTGGGAAAAGAGAAAAAAAAATGAGCAAGAGATGAACAGCTTATACATATACCTGGGTCACGGACCGTGGCATGGACGGCGTAGCCGCGGGAGAGGAGGAGCTCGACGAGCCACGAGCCGACGAACCCGCCGGCGCCGGTGACGCACACGACGCGCCGCCGCGGCGGAGGCGGCGCCATCTCCGGTTGCTCCTGCTGCCCCGCCATGTCAAAATCTAGGTCGCTTCGTACGCAGGCACGTACTGAGTTTGGTTGCA
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| CDS seq | ATGGCGGGGCAGCAGGAGCAACCGGAGATGGCGCCGCCTCCGCCGCGGCGGCGCGTCGTGTGCGTCACCGGCGCCGGCGGGTTCGTCGGCTCGTGGCTCGTCGAGCTCCTCCTCTCCCGCGGCTACGCCGTCCATGCCACGGTCCGTGACCCAGACGATCCCAAGAACGCGTTTCTGAAGCAACTGGAGAATGCTCCGGAGAATCTGCAACTGTTCGAGGCCGACGTGCTCGACTGCGGCTCACTGACGGCGGCGTTCGCCGGCTGCGAGGGTGTCTTCCATCTGGCCACTCCGGTGCCGGAAGAAAAGATCGTTGATCCACAGAAGGAGATGATGGCTCCTACCGTGGAAGGCACCAGAAATGTACTCGAGGCTTGCTCAGCTGCGAGCGTTCAGAAACTCGTCGTGGCCTCCTCCATTGCTACTGTTTGCCTTAACCCGAGCTGGCCTCAAGATATGCCGAAAGATGAGACTTCCTGGTCAGACAAGAAGCTCTGCATTGAAAATGAGGATTGGTACTCTGTTGCCAAAATCGAAGCTGAAGAGATGGCCCTGGAATACGGAAAGAAAAATGGGCTTCATGTACTTACGATTTGTCCTGGAATTGTTTTTGGCCCAATGTTGCAGACAGTGGAAATCAACACAAGCAGCAAAGTGCTCCTCTATATGATTAAGGGAGGAGACGGCCCTCACGTTATGAACAACAAATTCTGGCCCATGGTAGATGTCCGTGATGTTGCTGATGCTTTACTTCTAGCATACCACAAGGCAGGGCCATCTGAGCGGTACTTATGCACTCTAGAACAGATGGACCTGAAACATTTATTGGATCTGATGAAGAACATGTACCCTAACTACAATTATGCAGACAAGATGGTTGATGTGGATTACAAGGTCGAAGTGACATCAGAGAAACTGAAGAATCTGGGCTGGAACCCAAGGAAACGGGAGGAGACACTTGCGGACAGCATCGAGTTCTTTGAGAAGGCAGGCCTTCTAGATGGGCGACCTTGCCGGCTTCCCTATTTCGCTGTCCAGGAATGA
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| Protein seq | MAGQQEQPEMAPPPPRRRVVCVTGAGGFVGSWLVELLLSRGYAVHATVRDPDDPKNAFLKQLENAPENLQLFEADVLDCGSLTAAFAGCEGVFHLATPVPEEKIVDPQKEMMAPTVEGTRNVLEACSAASVQKLVVASSIATVCLNPSWPQDMPKDETSWSDKKLCIENEDWYSVAKIEAEEMALEYGKKNGLHVLTICPGIVFGPMLQTVEINTSSKVLLYMIKGGDGPHVMNNKFWPMVDVRDVADALLLAYHKAGPSERYLCTLEQMDLKHLLDLMKNMYPNYNYADKMVDVDYKVEVTSEKLKNLGWNPRKREETLADSIEFFEKAGLLDGRPCRLPYFAVQE |
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| Function | Cinnamoyl-CoA reductase 1 [UniProtKB/Swiss-Prot:Q6K9A2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0491852 | OsNip_09t0491852-01 | Chr09 | 19020438 | 19024327 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGGGCAGCAGGAGCAACCGGAGATGGCGCCGCCTCCGCCGCGGCGGCGCGTCGTGTGCGTCACCGGCGCCGGCGGGTTCGTCGGCTCGTGGCTCGTCGAGCTCCTCCTCTCCCGCGGCTACGCCGTCCATGCCACGGTCCGTGACCCAGACGATCCCAAGAACGCGTTTCTGAAGCAACTGGAGAATGCTCCGGAGAATCTGCAACTGTTCGAGGCCGACGTGCTCGACTGCGGCTCACTGACGGCGGCGTTCGCCGGCTGCGAGGGTGTCTTCCATCTGGCCACTCCGGTGCCGGAAGAAAAGATCGTTGATCCACAGAAGGAGATGATGGCTCCTACCGTGGAAGGCACCAGAAATGTACTCGAGGCTTGCTCAGCTGCGAGCGTTCAGAAACTCGTCGTGGCCTCCTCCATTGCTACTGTTTGCCTTAACCCGAGCTGGCCTCAAGATATGCCGAAAGATGAGACTTCCTGGTCAGACAAGAAGCTCTGCATTGAAAATGAGGATTGGTACTCTGTTGCCAAAATCGAAGCTGAAGAGATGGCCCTGGAATACGGAAAGAAAAATGGGCTTCATGTACTTACGATTTGTCCTGGAATTGTTTTTGGCCCAATGTTGCAGACAGTGGAAATCAACACAAGCAGCAAAGTGCTCCTCTATATGATTAAGGGAGGAGACGGCCCTCACGTTATGAACAACAAATTCTGGCCCATGGTAGATGTCCGTGATGTTGCTGATGCTTTACTTCTAGCATACCACAAGGCAGGGCCATCTGAGCGGTACTTATGCACTCTAGAACAGATGGACCTGAAACATTTATTGGATCTGATGAAGAACATGTACCCTAACTACAATTATGCAGACAAGATGGTTGATGTGGATTACAAGGTCGAAGTGACATCAGAGAAACTGAAGAATCTGGGCTGGAACCCAAGGAAACGGGAGGAGACACTTGCGGACAGCATCGAGTTCTTTGAGAAGGCAGGCCTTCTAGATGGGCGACCTTGCCGGCTTCCCTATTTCGCTGTCCAGGAATGA
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| Protein seq | MAGQQEQPEMAPPPPRRRVVCVTGAGGFVGSWLVELLLSRGYAVHATVRDPDDPKNAFLKQLENAPENLQLFEADVLDCGSLTAAFAGCEGVFHLATPVPEEKIVDPQKEMMAPTVEGTRNVLEACSAASVQKLVVASSIATVCLNPSWPQDMPKDETSWSDKKLCIENEDWYSVAKIEAEEMALEYGKKNGLHVLTICPGIVFGPMLQTVEINTSSKVLLYMIKGGDGPHVMNNKFWPMVDVRDVADALLLAYHKAGPSERYLCTLEQMDLKHLLDLMKNMYPNYNYADKMVDVDYKVEVTSEKLKNLGWNPRKREETLADSIEFFEKAGLLDGRPCRLPYFAVQE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0491852 | OsNip_09t0491852-02 | Chr09 | 19020431 | 19024330 | - | IsoSeq | ||
| CDS seq | ATGTACTCGAGGCTTGCTCAGCTGCGAGCGTTCAGAAACTCGTCGTGGCCTCCTCCATTGCTACTGTTTGCCTTAACCCGAGCTGGCCTCAAGATATGCCGAAAGATGAGACTTCCTGGTCAGACAAGAAGCTCTGCATTGAAAATGAGGATTGGTACTCTGTTGCCAAAATCGAAGCTGAAGAGATGGCCCTGGAATACGGAAAGAAAAATGGGCTTCATGTACTTACGATTTGTCCTGGAATTGTTTTTGGCCCAATGTTGCAGACAGTGGAAATCAACACAAGCAGCAAAGTGCTCCTCT
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| Protein seq | MYSRLAQLRAFRNSSWPPPLLLFALTRAGLKICRKMRLPGQTRSSALKMRIGTLLPKSKLKRWPWNTERKMGFMYLRFVLELFLAQCCRQWKSTQAAKCSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr09 | 19021129 | 19021728 | - | OsNip_09t0491852-02 | OsNip_09t0491852-01,OsNip_09t0491852-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 14.786488 | 14.760986 | 4.680099 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0515900 | SBH | 0.191819 | 0.000000 | 0.467281 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g31514 | RBH | 10.446239 | 9.854877 | 1.217810 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0491852 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015070 | SBH | 1.592517 | 3.665046 | 2.891791 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0015050 | SBH | 1.507178 | 0.0 | 1.983260 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0015280 | SBH | 4.061790 | 2.193399 | 5.149452 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015110 | SBH | 0.396966 | 0.052282 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0015200 | RBH | 25.049820 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0320200 | RBH | 9.232932 | 0.6471495 | 1.3743395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0015050 | SBH | 0.534614 | 0.000000 | 0.066753 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0308700 | SBH | 12.783332 | 0.8248655 | 4.413597 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0015020 | RBH | 1.259608 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0014870 | RBH | 1.179096 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0014920 | SBH | 16.105865 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0014790 | SBH | 1.208326 | 0.0 | 1.189856 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0014890 | SBH | 0.329510 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G015360 | RBH | 2.113175 | 0.0 | 0.143992 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015180 | RBH | 2.731717 | 0.0 | 0.913399 |
