Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0434000 | OGI:09046960 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:15937013-15937693 | ||||||||
| Gene Symbol | ARID5, OsARID | ||||||||||
| DNA seq | ATATCAACAGGCTCTTAACTTAATTTGACCAGCTACCGTAGTAGCTTAGCTGTGTTGTCAGTTGTTACATTCTATATAAAACTTAAGCTTCCTACGCTGAACCAAATTAATAGGGTAATACAGATCACAACACTACACACCTTCCTCTCTCTATCAGCAGCCTGCCTATTCTCTACTCTACTGGGCTCTTCTCCCCGAAACACAGGGCAAAAAAGAAGAAAGGAAAACTAAACATTTCGTGATACAGACACTGTATTCGCAAAGCCATTAGCTACCTTTTGGGGAGGAGGTTTCTTCTTATAGTTTGCTAGACTACAGTGAGGGCAGATGTATTCCAGCCCATCTGTCTTTGCATAATCCTGTAAAGAAGGTGACTCATATAAGATCAAGCTATGGCCAATAGAAAAGGACTGAACTAAAAGTTTTTTTTTTCTAACCTTGAAAGTGCCTAGGCCTTGTCGTCTGTCACAACCAAAATGTGCCCATTCACCACACAAACCACAGTTCACCCAATCTCCAGGAGCGCTACTGGAATTACACAGGAGATGGTGTTAGATTCGATTATGACAAACCATAATCGCAAATTGGGGAACCAAAGGAGGCATAGAAAGGGATGTCCTCAAACCTGTGGCAAAGCAAACAGCATTCCCCGTCTACATCATCATGAGCTAGCTCATATTC
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| CDS seq | GAATATGAGCTAGCTCATGATGATGTAGACGGGGAATGCTGTTTGCTTTGCCACAGTAGCGCTCCTGGAGATTGGGTGAACTGTGGTTTGTGTGGTGAATGGGCACATTTTGGTTGTGACAGACGACAAGGCCTAGGCACTTTCAAGGATTATGCAAAGACAGATGGGCTGGAATACATCTGCCCTCACTGTAGTCTAGCAAACTATAAGAAGAAACCTCCTCCCCAAAAGGTAGCTAATGGCTTTGCGAATACAGTGTCTGTATCACGAAATGTTTAG |
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| Protein seq | EYELAHDDVDGECCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHCSLANYKKKPPPQKVANGFANTVSVSRNV |
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| Function | AT-rich interactive domain-containing protein 4 [UniProtKB/Swiss-Prot:Q6NQ79] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0434000 | OsNip_09t0434000-01 | Chr09 | 15937013 | 15937693 | - | RAP2018-11-26 | ||
| CDS seq | GAATATGAGCTAGCTCATGATGATGTAGACGGGGAATGCTGTTTGCTTTGCCACAGTAGCGCTCCTGGAGATTGGGTGAACTGTGGTTTGTGTGGTGAATGGGCACATTTTGGTTGTGACAGACGACAAGGCCTAGGCACTTTCAAGGATTATGCAAAGACAGATGGGCTGGAATACATCTGCCCTCACTGTAGTCTAGCAAACTATAAGAAGAAACCTCCTCCCCAAAAGGTAGCTAATGGCTTTGCGAATACAGTGTCTGTATCACGAAATGTTTAG
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| Protein seq | EYELAHDDVDGECCLLCHSSAPGDWVNCGLCGEWAHFGCDRRQGLGTFKDYAKTDGLEYICPHCSLANYKKKPPPQKVANGFANTVSVSRNV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 9.290473 | 8.685448 | 7.997252 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0451400 | RBH | 2.599245 | 3.884311 | 3.148744 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g26390 | RBH | 4.119591 | 3.682681 | 2.252708 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0434000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0011370 | RBH | 1.726811 | 22.975082 | 14.094889 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0011310 | RBH | 1.368246 | 5.001208 | 6.896978 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0011570 | RBH | 4.138577 | 11.443347 | 20.078833 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0011340 | RBH | 0.579224 | 0.381976 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0011530 | RBH | 25.965929 | 15.989985 | 45.369949 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0265300 | RBH | 15.484383 | 27.843816 | 26.8356285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0011490 | RBH | 1.146675 | 1.859907 | 4.005430 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0255200 | RBH | 28.645177 | 36.7060395 | 49.7846125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0011450 | RBH | 1.158750 | 0.460683 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0011250 | RBH | 2.076062 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0011340 | RBH | 24.961348 | 24.815933 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0011140 | RBH | 2.230339 | 0.0 | 3.536557 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0011240 | RBH | 0.928621 | 10.659594 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G011750 | RBH | 2.257822 | 7.069057 | 8.507585 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0011550 | RBH | 5.350389 | 30.126709 | 19.420559 |
