Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0365450 | OGI:09035590 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:12005282-12006024 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTGCACAGGAACAGGAAAGCTAGTAGTACTACAGTTTTTCATCGATCGGATGCAGCTACAGTTGCTTGCTTGCTGTCGTCAATTCCGTCCCCTTTCTTCCTTGTCCCCTGCCCAATCTACACCAATGAGGCTAGCCCTAGTCAACCATCCCCTTGCTGGAACGGGATTGACGGATCGCCGGAGAGCAAGGGCGACGCGGACCTCGGCGAGGTCCAGCAGCACTCCGGTGCTGTCGACGACATCCTCGCCTGGGCCTTGCGGGACGGGGAGTCGTTTCCGATGTGGTCGCGTGGGAGGAGGATGCCGAGGAGATCGAAGGAAAAACCGGAGCCGCCCGTCATCGTCGCGCGGGAAAGCACCAACACGATGCGGTCGCATATGATGGAGATTGCGGACGGCGAGGATGTCGCCGAAGCCGTGGCTGATTTCGCGCGCCGCCGGCAGAGCTGGGTGTGAGTGCTATCCGGCAGCGGCGCCGTCTCCAGCGCCTCGCTGCGCCAGCCCGGCGAGCCTGGCTCCGTCATCGAGCTCTCCGGCCCATTGGAGATCCTGTCCCTCTCCGGAGCATTTATGCCGCCGCCGAGCCTGGCCAACGCCACGGGGCTCAAGGCCCTCCTCGCCGGCGGGCAGGGCCAGGTCATCGGCGGCAACGTCGTCGGCGCCCTCCGCGCTAGAGGACATGTCACGATCCTCGCGGCCGTCGTCTCCAACGTTACCTACGAATGCCTCTCGCCCGAACACGA
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| CDS seq | CTGCACAGGAACAGGAAAGCTAGTAGTACTACAGTTTTTCATCGATCGGATGCAGCTACAGTTGCTTGCTTGCTGTCGTCAATTCCGTCCCCTTTCTTCCTTGTCCCCTGCCCAATCTACACCAATGAGGCTAGCCCTAGTCAACCATCCCCTTGCTGGAACGGGATTGACGGATCGCCGGAGAGCAAGGGCGACGCGGACCTCGGCGAGGTCCAGCAGCACTCCGGTGCTGTCGACGACATCCTCGCCTGGGCCTTGCGGGACGGGGAGTCGTTTCCGATGTGGTCGCGTGGGAGGAGGATGCCGAGGAGATCGAAGGAAAAACCGGAGCCGCCCGTCATCGTCGCGCGGGAAAGCACCAACACGATGCGGTCGCATATGATGGAGATTGCGGACGGCGAGGATGTCGCCGAAGCCGTGGCTGATTTCGCGCGCCGCCGGCAGAGCTGGGTGTGA
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| Protein seq | LHRNRKASSTTVFHRSDAATVACLLSSIPSPFFLVPCPIYTNEASPSQPSPCWNGIDGSPESKGDADLGEVQQHSGAVDDILAWALRDGESFPMWSRGRRMPRRSKEKPEPPVIVARESTNTMRSHMMEIADGEDVAEAVADFARRRQSWV |
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| Function | AT-hook motif nuclear-localized protein 24 [UniProtKB/Swiss-Prot:O49662] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0365450 | OsNip_09t0365450-00 | Chr09 | 12005282 | 12006024 | + | RAP2018-11-26 | ||
| CDS seq | CTGCACAGGAACAGGAAAGCTAGTAGTACTACAGTTTTTCATCGATCGGATGCAGCTACAGTTGCTTGCTTGCTGTCGTCAATTCCGTCCCCTTTCTTCCTTGTCCCCTGCCCAATCTACACCAATGAGGCTAGCCCTAGTCAACCATCCCCTTGCTGGAACGGGATTGACGGATCGCCGGAGAGCAAGGGCGACGCGGACCTCGGCGAGGTCCAGCAGCACTCCGGTGCTGTCGACGACATCCTCGCCTGGGCCTTGCGGGACGGGGAGTCGTTTCCGATGTGGTCGCGTGGGAGGAGGATGCCGAGGAGATCGAAGGAAAAACCGGAGCCGCCCGTCATCGTCGCGCGGGAAAGCACCAACACGATGCGGTCGCATATGATGGAGATTGCGGACGGCGAGGATGTCGCCGAAGCCGTGGCTGATTTCGCGCGCCGCCGGCAGAGCTGGGTGTGA
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| Protein seq | LHRNRKASSTTVFHRSDAATVACLLSSIPSPFFLVPCPIYTNEASPSQPSPCWNGIDGSPESKGDADLGEVQQHSGAVDDILAWALRDGESFPMWSRGRRMPRRSKEKPEPPVIVARESTNTMRSHMMEIADGEDVAEAVADFARRRQSWV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.328592 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g20040 | RBH | 0.080051 | 0.0 | 0.040323 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0365450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0013500 | SBH | 0.0 | 0.0 | 0.656621 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007690 | SBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0207300 | SBH | 0.2064975 | 2.27729 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0187100 | SBH | 0.143528 | 0.7882255 | 0.002799 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007730 | SBH | 0.0 | 0.031156 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007540 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G008080 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
