Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0364100 | OGI:09035360 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:11943224-11944253 | ||||||||
| Gene Symbol | OsSTA224, STA224 | ||||||||||
| DNA seq | GCCCGCTCGCGCGCTACTTCCCCGCCGACGAGCAGCGGCGATTCCTCAACGCGCACCACCTGTTCGGCGTCAGCAAGATCCAGAAGACGCTGCGGGACACGCCGCCGGAGCTCCACGCCGACGCCATGCAGGCGCTCACGTTCGAGGCCAACGCGCGCGCCAGCGACCCCGTCGGCGGCGCGGCGCGCGTCGTCGTCGAGCTCTGCCGCCAGTACGAGATGCTGCACGCCGAGCTCGCCGCCGTCCAGCACCACCTCAAGCTCTGCCGCCAGCAGCACGCCGCTGCGGCGGCGGCGGCAGCCAACGATCCACTCGTCGCGAACGTCGACCCGCTCGCTGACCCGGCAGCGGAAATGCTCTTCGCCGGCGCCGTCGTCCCTAACCAGAACGACGACGCCATGGTCGACGCGTTCTACGCCGACCAACAAACCGCCGGCGACGGCGACCAAGAGCAATACCTCGTCAAGGACGAGGCACTAGCTGCGCAACCGCCGCCGCAACAACCCTACGAGTACTTGAACTACGGGACGGCCGGCGACGAGGGCAGCAGCCACGCCTGGTACACCGGCAACGGCGGCGACGCCGACGCCTCGCCGCCGATGGGTTTGAGCGATCAGCTCCAGCAGTGCCAGATCGGGGCCGCGCCGCCGTTCGATGTGAAGCCTGAGCTGCCGGCGACGATGGAACACGGCGGTAGCGTGTTCGTCGAACAGCCGGAGCAGAAGATTCTGCCGGCGGCAGGGTCGTCGTCGTCGGCGGCGGCGCATTGCCAGCTGGAGCTTGGGTGCTCTTCTAATGCTTGGAAAGTTGGAACACACGTTATTAATTAATTAATTAATTAGTTTCTCGATTTGATTGATTCGGATATGATGAAATGCTTGTTGCATTTCAAATTTTGGCTTGTTGAGTTAGGAGTTAATTACAAAAATAATCACTAGACTAGCTTATAAATAGTCAAGTTTTAATTAATAGTAGATGATGTATCTATGAATGAGAGTGCAAATAAAAGGCTCTGTCTATTAATGAGGTT
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| CDS seq | CCGCTCGCGCGCTACTTCCCCGCCGACGAGCAGCGGCGATTCCTCAACGCGCACCACCTGTTCGGCGTCAGCAAGATCCAGAAGACGCTGCGGGACACGCCGCCGGAGCTCCACGCCGACGCCATGCAGGCGCTCACGTTCGAGGCCAACGCGCGCGCCAGCGACCCCGTCGGCGGCGCGGCGCGCGTCGTCGTCGAGCTCTGCCGCCAGTACGAGATGCTGCACGCCGAGCTCGCCGCCGTCCAGCACCACCTCAAGCTCTGCCGCCAGCAGCACGCCGCTGCGGCGGCGGCGGCAGCCAACGATCCACTCGTCGCGAACGTCGACCCGCTCGCTGACCCGGCAGCGGAAATGCTCTTCGCCGGCGCCGTCGTCCCTAACCAGAACGACGACGCCATGGTCGACGCGTTCTACGCCGACCAACAAACCGCCGGCGACGGCGACCAAGAGCAATACCTCGTCAAGGACGAGGCACTAGCTGCGCAACCGCCGCCGCAACAACCCTACGAGTACTTGAACTACGGGACGGCCGGCGACGAGGGCAGCAGCCACGCCTGGTACACCGGCAACGGCGGCGACGCCGACGCCTCGCCGCCGATGGGTTTGAGCGATCAGCTCCAGCAGTGCCAGATCGGGGCCGCGCCGCCGTTCGATGTGAAGCCTGAGCTGCCGGCGACGATGGAACACGGCGGTAGCGTGTTCGTCGAACAGCCGGAGCAGAAGATTCTGCCGGCGGCAGGGTCGTCGTCGTCGGCGGCGGCGCATTGCCAGCTGGAGCTTGGGTGCTCTTCTAATGCTTGGAAAGTTGGAACACACGTTATTAATTAA
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| Protein seq | PLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVVVELCRQYEMLHAELAAVQHHLKLCRQQHAAAAAAAANDPLVANVDPLADPAAEMLFAGAVVPNQNDDAMVDAFYADQQTAGDGDQEQYLVKDEALAAQPPPQQPYEYLNYGTAGDEGSSHAWYTGNGGDADASPPMGLSDQLQQCQIGAAPPFDVKPELPATMEHGGSVFVEQPEQKILPAAGSSSSAAAHCQLELGCSSNAWKVGTHVIN |
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| Function | LOB domain-containing protein 7 [UniProtKB/Swiss-Prot:Q9SSM9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0364100 | OsNip_09t0364100-01 | Chr09 | 11943224 | 11944253 | + | RAP2018-11-26 | ||
| CDS seq | CCGCTCGCGCGCTACTTCCCCGCCGACGAGCAGCGGCGATTCCTCAACGCGCACCACCTGTTCGGCGTCAGCAAGATCCAGAAGACGCTGCGGGACACGCCGCCGGAGCTCCACGCCGACGCCATGCAGGCGCTCACGTTCGAGGCCAACGCGCGCGCCAGCGACCCCGTCGGCGGCGCGGCGCGCGTCGTCGTCGAGCTCTGCCGCCAGTACGAGATGCTGCACGCCGAGCTCGCCGCCGTCCAGCACCACCTCAAGCTCTGCCGCCAGCAGCACGCCGCTGCGGCGGCGGCGGCAGCCAACGATCCACTCGTCGCGAACGTCGACCCGCTCGCTGACCCGGCAGCGGAAATGCTCTTCGCCGGCGCCGTCGTCCCTAACCAGAACGACGACGCCATGGTCGACGCGTTCTACGCCGACCAACAAACCGCCGGCGACGGCGACCAAGAGCAATACCTCGTCAAGGACGAGGCACTAGCTGCGCAACCGCCGCCGCAACAACCCTACGAGTACTTGAACTACGGGACGGCCGGCGACGAGGGCAGCAGCCACGCCTGGTACACCGGCAACGGCGGCGACGCCGACGCCTCGCCGCCGATGGGTTTGAGCGATCAGCTCCAGCAGTGCCAGATCGGGGCCGCGCCGCCGTTCGATGTGAAGCCTGAGCTGCCGGCGACGATGGAACACGGCGGTAGCGTGTTCGTCGAACAGCCGGAGCAGAAGATTCTGCCGGCGGCAGGGTCGTCGTCGTCGGCGGCGGCGCATTGCCAGCTGGAGCTTGGGTGCTCTTCTAATGCTTGGAAAGTTGGAACACACGTTATTAATTAA
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| Protein seq | PLARYFPADEQRRFLNAHHLFGVSKIQKTLRDTPPELHADAMQALTFEANARASDPVGGAARVVVELCRQYEMLHAELAAVQHHLKLCRQQHAAAAAAAANDPLVANVDPLADPAAEMLFAGAVVPNQNDDAMVDAFYADQQTAGDGDQEQYLVKDEALAAQPPPQQPYEYLNYGTAGDEGSSHAWYTGNGGDADASPPMGLSDQLQQCQIGAAPPFDVKPELPATMEHGGSVFVEQPEQKILPAAGSSSSAAAHCQLELGCSSNAWKVGTHVIN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0402100 | RBH | 0.0 | 0.0 | 3.903607 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19950 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0364100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0007510 | RBH | 0.0 | 0.0 | 0.431141 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0007500 | RBH | 0.0 | 0.0 | 0.225950 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0007720 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0007560 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0007690 | RBH | 0.0 | 0.0 | 0.879426 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0205400 | RBH | 0 | 0.0085495 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0007660 | RBH | 0.0 | 0.0 | 0.641601 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0185500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007610 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007410 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007340 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0007340 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0007410 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007950 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007760 | RBH | 0.000000 | 0.0 | 3.004921 |
