Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0351900 | OGI:01009580 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:11201875-11202819 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATGTTGAAGCCGAACGACGACTTAAAATACTAGACTTGACACTTTTATAGTACTCTTGCTCCTCGATTGACATCGCACTTGTATCTAGCCTCACAATTCTATCTTCTTGTATCATCCTCTTGAAATCCAACTTTTCTTTGTCCAAATCAATCCGCTTTTGTTCAAGTGCAAGTGCAGCTCTGTACCTCTCCTCTCTTTGCCGATCCTTCTCCGCATCAACCTCTTTCTTCTTATTCCATAATAGATCTAAAGCATCAATTTTGGATTGGTCTGAGTGTTGACGCTGTTTTTCTTTCTCTTTCTTCCTCCCTGCAGGTCTACCCGAAGGCTGCACACCATCAGCTGCAATAGGGTCCTCTTTCACTTGAGAGACACAGTTCTGAGGGCCTGAAGATGCAGCTGTAGCAGGTGTAGACTGTGCATTGCTCTTTTGTTTCTTACTTGTATTTTTTTTTACTTCCCTTTTTGTATTCGCCAATCAATCCACTTTGGCTGGTCCTTCAAAAATTTGTAGCAATGCACGAACTGAAAAGTCATTTTTTTGGGATCTTCTTTCTTGTACAAAATCCCAGCCTGCAGAAGCTGCATATAAAAGTGCAAAAGAAAGTTAGTCTACAAAGGTAACTATATGAATAATAACGAGTGCTCTTGCAACATTTCAATTATCACCTTGTCCTCAGCGTTGACACCACTTTGAGGTCTATTCTCAATATAGCTTACACAGCCAGCAAGCTTATTAATTGACACACTCTTGTATAGTGGACCAATGATGCATGAGCCAAATTTGAGTGCGATCTGAAGTGAAGTCCTTGTTTGCATGAAAGAAGTCATAAATACGGTTCCAATATGTACTTCGAGGTTGATCGGCACCTTGAATAGCATCCATACTAATGTTAACTCATGCTGATACCATTAGGACATCCTCCTGCATACTAAAATTCTT
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| CDS seq | TTGGCGAATACAAAAAGGGAAGTAAAAAAAAATACAAGTAAGAAACAAAAGAGCAATGCACAGTCTACACCTGCTACAGCTGCATCTTCAGGCCCTCAGAACTGTGTCTCTCAAGTGAAAGAGGACCCTATTGCAGCTGATGGTGTGCAGCCTTCGGGTAGACCTGCAGGGAGGAAGAAAGAGAAAGAAAAACAGCGTCAACACTCAGACCAATCCAAAATTGATGCTTTAGATCTATTATGGAATAAGAAGAAAGAGGTTGATGCGGAGAAGGATCGGCAAAGAGAGGAGAGGTACAGAGCTGCACTTGCACTTGAACAAAAGCGGATTGATTTGGACAAAGAAAAGTTGGATTTCAAGAGGATGATACAAGAAGATAGAATTGTGAGGCTAGATACAAGTGCGATGTCAATCGAGGAGCAAGAGTACTATAAAAGTGTCAAGTCTAGTATTTTAAGTCGTCGTTCGGCTTCAACATAA
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| Protein seq | LANTKREVKKNTSKKQKSNAQSTPATAASSGPQNCVSQVKEDPIAADGVQPSGRPAGRKKEKEKQRQHSDQSKIDALDLLWNKKKEVDAEKDRQREERYRAALALEQKRIDLDKEKLDFKRMIQEDRIVRLDTSAMSIEEQEYYKSVKSSILSRRSAST |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0351900 | OsNip_09t0351900-00 | Chr09 | 11201875 | 11202819 | - | RAP2018-11-26 | ||
| CDS seq | TTGGCGAATACAAAAAGGGAAGTAAAAAAAAATACAAGTAAGAAACAAAAGAGCAATGCACAGTCTACACCTGCTACAGCTGCATCTTCAGGCCCTCAGAACTGTGTCTCTCAAGTGAAAGAGGACCCTATTGCAGCTGATGGTGTGCAGCCTTCGGGTAGACCTGCAGGGAGGAAGAAAGAGAAAGAAAAACAGCGTCAACACTCAGACCAATCCAAAATTGATGCTTTAGATCTATTATGGAATAAGAAGAAAGAGGTTGATGCGGAGAAGGATCGGCAAAGAGAGGAGAGGTACAGAGCTGCACTTGCACTTGAACAAAAGCGGATTGATTTGGACAAAGAAAAGTTGGATTTCAAGAGGATGATACAAGAAGATAGAATTGTGAGGCTAGATACAAGTGCGATGTCAATCGAGGAGCAAGAGTACTATAAAAGTGTCAAGTCTAGTATTTTAAGTCGTCGTTCGGCTTCAACATAA
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| Protein seq | LANTKREVKKNTSKKQKSNAQSTPATAASSGPQNCVSQVKEDPIAADGVQPSGRPAGRKKEKEKQRQHSDQSKIDALDLLWNKKKEVDAEKDRQREERYRAALALEQKRIDLDKEKLDFKRMIQEDRIVRLDTSAMSIEEQEYYKSVKSSILSRRSAST |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g18250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0351900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0006870 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006870 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0195300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0173300 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006950 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0006710 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G007300 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0007120 | RBH | 0.0 | 0.0 | 0.0 |
