Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0338200 | OGI:09031060 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:10306223-10307407 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGAGCAGCAGCTCGCCGTGTAAGCTCGTCTCTTGCGGCGACAACCGCCACTTCATGTTCCGGGTTGACGGGGCGGCGATACGCCGGCCCGTCGGGCGCATAGTCAAGGAGACCTGCGAAATCGGCAATGGCTACACATGCGAAGCATCTCTTTTCGTGCCGTCATTACTGGGTGAGAGAAAGGTGATGATGATTCTGGCCGTGACGGTAAACAGCGACCGAGCTCAGTCGTTGGCGAGAGCGCACAAGGTGTTCATTGACATGGCACTCTTGGACGATACCAAGTCGCCTGTTCTTCCGCCGTTCGCCAGATCGGTGATGTCGCCGTCCGCCGCTGCAGGTAGCAGTCCTAAGCTGCCGCCGCCCGTCGCCGGGAGCAACCTAGCTGCTAGCTGCAAACTGGTAGCCTCGAGGGATCACCTCTTGGCCAACTGTGTAAAAGGCGGCATCCTGGCGGCGTTGTGCTGGGTTGTCTTTGTTCCCTCGTCGCCGCGGTCGCCGTACTCGTTGTTAGCCCACTGCCTTGCCACCATGTCAAACGGTCGAGACCTCACCGACGTCTGCTTCGACGTCGACGGCAAGAGTTTCCACGCGCACCGCCTCATAATGGCGCGTCAGTCGGAGGTGTTTAGGGCAGAGCTACTTGGCTCCATGGCCGAGAGCAAGATGGAGTGCATCACCATCTCCGACATGAGCGCCTCCACCTTCAAGCACATGCTCCACTACATCTACTGCAACGACCTGCCCACCTGTGTAAAAGACACAGACGATCAGTCCTCCTGGATCTTCGAATTGCAGCACCTGCTCGTCACCGCCGATCGATACGGAGTGGATACGTTGAAGGATTTGTGCGAGGACACGCTCTGCGCTGACATCACCACGGACACGGTGACATCAACACTGGAGCTGGCGGAGACGAGATCATATCCGAAGCTAAGAACGTCCTGTCTTGTATTCCTATCGAATACACAAAATTTCGCCGAGGTGGCAACGACTAAGGAGTACTATAATCTGATACAGAGCTACCCGAGTGTGCTGTCCGAGATAAGGAACAGGTTTAAGAGACCACGGCCGTCTCTGATGCTAGCTCCGTCAACCGTCACCGAAAATCAAAACAAGAGACCACGGCTGTCTCCTAAGCTAACTCCATCAGCCGACACCAAAGATGAAAACAACCCTTAG
More
|
||||||||||
| CDS seq | ATGGCGAGCAGCAGCTCGCCGTGTAAGCTCGTCTCTTGCGGCGACAACCGCCACTTCATGTTCCGGGTTGACGGGGCGGCGATACGCCGGCCCGTCGGGCGCATAGTCAAGGAGACCTGCGAAATCGGCAATGGCTACACATGCGAAGCATCTCTTTTCGTGCCGTCATTACTGGGTGAGAGAAAGGTGATGATGATTCTGGCCGTGACGGTAAACAGCGACCGAGCTCAGTCGTTGGCGAGAGCGCACAAGGTGTTCATTGACATGGCACTCTTGGACGATACCAAGTCGCCTGTTCTTCCGCCGTTCGCCAGATCGGTGATGTCGCCGTCCGCCGCTGCAGGTAGCAGTCCTAAGCTGCCGCCGCCCGTCGCCGGGAGCAACCTAGCTGCTAGCTGCAAACTGGTAGCCTCGAGGGATCACCTCTTGGCCAACTGTGTAAAAGGCGGCATCCTGGCGGCGTTGTGCTGGGTTGTCTTTGTTCCCTCGTCGCCGCGGTCGCCGTACTCGTTGTTAGCCCACTGCCTTGCCACCATGTCAAACGGTCGAGACCTCACCGACGTCTGCTTCGACGTCGACGGCAAGAGTTTCCACGCGCACCGCCTCATAATGGCGCGTCAGTCGGAGGTGTTTAGGGCAGAGCTACTTGGCTCCATGGCCGAGAGCAAGATGGAGTGCATCACCATCTCCGACATGAGCGCCTCCACCTTCAAGCACATGCTCCACTACATCTACTGCAACGACCTGCCCACCTGTGTAAAAGACACAGACGATCAGTCCTCCTGGATCTTCGAATTGCAGCACCTGCTCGTCACCGCCGATCGATACGGAGTGGATACGTTGAAGGATTTGTGCGAGGACACGCTCTGCGCTGACATCACCACGGACACGGTGACATCAACACTGGAGCTGGCGGAGACGAGATCATATCCGAAGCTAAGAACGTCCTGTCTTGTATTCCTATCGAATACACAAAATTTCGCCGAGGTGGCAACGACTAAGGAGTACTATAATCTGATACAGAGCTACCCGAGTGTGCTGTCCGAGATAAGGAACAGGTTTAAGAGACCACGGCCGTCTCTGATGCTAGCTCCGTCAACCGTCACCGAAAATCAAAACAAGAGACCACGGCTGTCTCCTAAGCTAACTCCATCAGCCGACACCAAAGATGAAAACAACCCTTAG
More
|
||||||||||
| Protein seq | MASSSSPCKLVSCGDNRHFMFRVDGAAIRRPVGRIVKETCEIGNGYTCEASLFVPSLLGERKVMMILAVTVNSDRAQSLARAHKVFIDMALLDDTKSPVLPPFARSVMSPSAAAGSSPKLPPPVAGSNLAASCKLVASRDHLLANCVKGGILAALCWVVFVPSSPRSPYSLLAHCLATMSNGRDLTDVCFDVDGKSFHAHRLIMARQSEVFRAELLGSMAESKMECITISDMSASTFKHMLHYIYCNDLPTCVKDTDDQSSWIFELQHLLVTADRYGVDTLKDLCEDTLCADITTDTVTSTLELAETRSYPKLRTSCLVFLSNTQNFAEVATTKEYYNLIQSYPSVLSEIRNRFKRPRPSLMLAPSTVTENQNKRPRLSPKLTPSADTKDENNP |
||||||||||
| Function | BTB/POZ and MATH domain-containing protein 1 [UniProtKB/Swiss-Prot:Q8L765] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0338200 | OsNip_09t0338200-00 | Chr09 | 10306223 | 10307407 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGAGCAGCAGCTCGCCGTGTAAGCTCGTCTCTTGCGGCGACAACCGCCACTTCATGTTCCGGGTTGACGGGGCGGCGATACGCCGGCCCGTCGGGCGCATAGTCAAGGAGACCTGCGAAATCGGCAATGGCTACACATGCGAAGCATCTCTTTTCGTGCCGTCATTACTGGGTGAGAGAAAGGTGATGATGATTCTGGCCGTGACGGTAAACAGCGACCGAGCTCAGTCGTTGGCGAGAGCGCACAAGGTGTTCATTGACATGGCACTCTTGGACGATACCAAGTCGCCTGTTCTTCCGCCGTTCGCCAGATCGGTGATGTCGCCGTCCGCCGCTGCAGGTAGCAGTCCTAAGCTGCCGCCGCCCGTCGCCGGGAGCAACCTAGCTGCTAGCTGCAAACTGGTAGCCTCGAGGGATCACCTCTTGGCCAACTGTGTAAAAGGCGGCATCCTGGCGGCGTTGTGCTGGGTTGTCTTTGTTCCCTCGTCGCCGCGGTCGCCGTACTCGTTGTTAGCCCACTGCCTTGCCACCATGTCAAACGGTCGAGACCTCACCGACGTCTGCTTCGACGTCGACGGCAAGAGTTTCCACGCGCACCGCCTCATAATGGCGCGTCAGTCGGAGGTGTTTAGGGCAGAGCTACTTGGCTCCATGGCCGAGAGCAAGATGGAGTGCATCACCATCTCCGACATGAGCGCCTCCACCTTCAAGCACATGCTCCACTACATCTACTGCAACGACCTGCCCACCTGTGTAAAAGACACAGACGATCAGTCCTCCTGGATCTTCGAATTGCAGCACCTGCTCGTCACCGCCGATCGATACGGAGTGGATACGTTGAAGGATTTGTGCGAGGACACGCTCTGCGCTGACATCACCACGGACACGGTGACATCAACACTGGAGCTGGCGGAGACGAGATCATATCCGAAGCTAAGAACGTCCTGTCTTGTATTCCTATCGAATACACAAAATTTCGCCGAGGTGGCAACGACTAAGGAGTACTATAATCTGATACAGAGCTACCCGAGTGTGCTGTCCGAGATAAGGAACAGGTTTAAGAGACCACGGCCGTCTCTGATGCTAGCTCCGTCAACCGTCACCGAAAATCAAAACAAGAGACCACGGCTGTCTCCTAAGCTAACTCCATCAGCCGACACCAAAGATGAAAACAACCCTTAG
More
|
|||||||
| Protein seq | MASSSSPCKLVSCGDNRHFMFRVDGAAIRRPVGRIVKETCEIGNGYTCEASLFVPSLLGERKVMMILAVTVNSDRAQSLARAHKVFIDMALLDDTKSPVLPPFARSVMSPSAAAGSSPKLPPPVAGSNLAASCKLVASRDHLLANCVKGGILAALCWVVFVPSSPRSPYSLLAHCLATMSNGRDLTDVCFDVDGKSFHAHRLIMARQSEVFRAELLGSMAESKMECITISDMSASTFKHMLHYIYCNDLPTCVKDTDDQSSWIFELQHLLVTADRYGVDTLKDLCEDTLCADITTDTVTSTLELAETRSYPKLRTSCLVFLSNTQNFAEVATTKEYYNLIQSYPSVLSEIRNRFKRPRPSLMLAPSTVTENQNKRPRLSPKLTPSADTKDENNP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g16870 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0338200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0006290 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006310 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006520 | RBH | 0.0 | 1.881400 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0006360 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006440 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0182800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006550 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0158400 | RBH | 0 | 0.0285005 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006410 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0006240 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0006260 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0006180 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0006250 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006620 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0006480 | RBH | 0.0 | 0.0 | 0.0 |
