Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0327600 | OGI:09029070 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:9672226-9674673 | ||||||||
| Gene Symbol | PI3, Pii, Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, RMg22, RMg21 | ||||||||||
| DNA seq | CACACTCAATCATGTCAAGTGCAATCCATTGCTGAATAAGTTTCTTCTTTTCTATAACAGTTCCTTTAGGGAAGATTGAACAATATACAAAGCATAATCTTAGCTCATGGGGCATATTATAATATATTATCTTGAATGATGGAAATAGTGGTGAAATTTTGTCTTGGGGATAATCTTCCTCTATCTTCCACATTTCTTCATCCTTTGCAGCTTGCCAAATCTCACGCCTTTGTCGTTGAGCATTCACCACAGAACCGAGAAAATTGGCTACCAAGGGTGTGCCTTCACACCTTCTAACGATTTCTTCTCCATATTCCCTGAACAACGGGTCACCCGGACCTGTCATTGCCCTTTGAGAGAATATTTTTAAACAATCATCCTCAGATAAAGCTGCCAGCTTGTACAGTGGAACGGTGGAAATCAGCTTAGCTACTTTATTGCTATGAGTGGTCACTATGATCTTGCTTTCTGTATGTCTACCAGTAAGCAACATCTGCTTCAATTCATTCACTTCTTCATCCTTTCCCCAAAGGCTATCTAATATGATCAAGCAACTATATTTATTTAGCACACGCTGAACAGCATTCTTGATTGACTGCAGCTGCATATTTCCCTCAATTTTTTCTGTAGTTTGTGAAACTATATCTCTTCCAATTTTTTCAAGGTTGATATTACCCATGGAAACATGAACCCATATCCTAAAGCTGAATACCTCTGTTCCTGTATTATTGAAAACGAACTGTGCTAGGCTTGTCTTCCCAAAACCTACAGGCCCAACTATGGATATAATGGAAAGCTCTTCAGCGCTGTTTTCCATTAAAATGTCCATGAGATTATCTAAGTCTGCATCCCTCCCAACAATTGCAATGTCAGTATTTCTGTATGATGTTGTTTGCTTCTCCTCAAAATTCACTGCTGAGTTGATATGTGAAAGGAAATGATACTGATTGGGCAATTGTTGCCTTTGCTGTAACATCTCCCTCTTGGACTTCATCTTATAAACCATGCTACCTTTCAGAAGCATTGGATTCGATAGTGAGCAGAATAATGACCCCTGTAAATTTACCAACATATATACATAAAAGTAGTCTTTATCATGAAATATATTTTATATTTTGATAACGATGTTGCTGGAAGACAAAAAAGGGGACAGCTAAACAAGAGTTGGTGCATCAAGGAGCCAAGGAAGGTACCAGCCCTTACATAGCTGATAGATACACAAGTCTTTGGTATAAACCTTGCATTTTCTCATATAATACGAAGGACATTTTTTTGCATGCCTACAAGTTTCTCATCTCTCACTATCTAGTCCCCCTCAAGCAAATGTACAGTCTAAAGATAAGTTACGTGTAAGTATTCGGCTTATCTCTTACTATTACCAAATAATTTCTTAACAAAAGGAAGGATGCTTCTAATTATCGATTGTGTTGACTTATATAAGCTACGCTAGATGACACCCTGTGCGTTGCTGCAGGATGTTGGTGTGTAAAGTGCAATTGCAAAATTGCAATATATGGAACTGACAAAATGATTAATCCAACAACCCAAAAAAGATTGATGTAGGCTACAAAGACTGGGCTAATCCAAACAGTTACCATCGAAGGATGTCAAAGATAAGATGATATTGCTTCTTTCAGCCCCATAGGTTGCCCAAAGAAGAATAAGCCAAAGCCAAAATTTGAATTTTAAAACTTAATTTTGAAGTTGATTTTTAAGATAAGATATTTTCAACATATTTTTTCAGCATTGACTTTTAAATCGCTGAGAACACATATATAAAAATTTTACACAAATTATTATTTGGTCGCTAATAAACCATTACAGCTTATAATCAGCTTTTGGGCAACCTATGAGACCCTTTCTTTATACAGCTTATAAAAAAGAAGAAAGGAAAAATTCCCAATTCCGAGCTGATTCGCAGTTAGGCAACAAGCCATTCTAGTGGTGCCACGTGCCCCTACTAATACACTCCAGATCCAATCACCGGCTAATTCCGAAAATTAAATTGAAATTGCAGAAGGAATTCTTCTGGACTAAAGAAAGGGAAGAGATTGGCTTTCCGAAGAGCATCCATTACCTTCTGAGCATAGCTGCCCCCATCGAACTGCTCCTTGGAAGAGTAGTACCCATCAACGATATCTTCGATGTCGTAAGCCAGGGACTTGATCTGGCCGAGCCAGTGTCGCAGGTTGGCCCTGTCGCTTCCGAAGGAGTTGTTCTCGGCGTTTTTCAGAAGGGTTTCCAGGTACACCAAGGTATCCTTGATGCCCTCCAAATCGTCGCTGAAATTGCAGCACAGCTTCACCTCGCCCTGCGCGACGCCGACGATGCCGTTGATCTTCCGGGCGACCTGGCTCACCGCCGCGGCCACAAGCATCTCGGCGCCAACCATGCTGCAACGGATGGGGGAGCTAGGAGTGACCGGAGGGAAGACACCAATGCAGATAT
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| CDS seq | ATGGTTGGCGCCGAGATGCTTGTGGCCGCGGCGGTGAGCCAGGTCGCCCGGAAGATCAACGGCATCGTCGGCGTCGCGCAGGGCGAGGTGAAGCTGTGCTGCAATTTCAGCGACGATTTGGAGGGCATCAAGGATACCTTGGTGTACCTGGAAACCCTTCTGAAAAACGCCGAGAACAACTCCTTCGGAAGCGACAGGGCCAACCTGCGACACTGGCTCGGCCAGATCAAGTCCCTGGCTTACGACATCGAAGATATCGTTGATGGGTACTACTCTTCCAAGGAGCAGTTCGATGGGGGCAGCTATGCTCAGAAGGGGTCATTATTCTGCTCACTATCGAATCCAATGCTTCTGAAAGGTAGCATGGTTTATAAGATGAAGTCCAAGAGGGAGATGTTACAGCAAAGGCAACAATTGCCCAATCAGTATCATTTCCTTTCACATATCAACTCAGCAGTGAATTTTGAGGAGAAGCAAACAACATCATACAGAAATACTGACATTGCAATTGTTGGGAGGGATGCAGACTTAGATAATCTCATGGACATTTTAATGGAAAACAGCGCTGAAGAGCTTTCCATTATATCCATAGTTGGGCCTGTAGGTTTTGGGAAGACAAGCCTAGCACAGTTCGTTTTCAATAATACAGGAACAGAGGTATTCAGCTTTAGGATATGGGTTCATGTTTCCATGGGTAATATCAACCTTGAAAAAATTGGAAGAGATATAGTTTCACAAACTACAGAAAAAATTGAGGGAAATATGCAGCTGCAGTCAATCAAGAATGCTGTTCAGCGTGTGCTAAATAAATATAGTTGCTTGATCATATTAGATAGCCTTTGGGGAAAGGATGAAGAAGTGAATGAATTGAAGCAGATGTTGCTTACTGGTAGACATACAGAAAGCAAGATCATAGTGACCACTCATAGCAATAAAGTAGCTAAGCTGATTTCCACCGTTCCACTGTACAAGCTGGCAGCTTTATCTGAGGATGATTGTTTAAAAATATTCTCTCAAAGGGCAATGACAGGTCCGGGTGACCCGTTGTTCAGGGAATATGGAGAAGAAATCGTTAGAAGGTGTGAAGGCACACCCTTGGTAGCCAATTTTCTCGGTTCTGTGGTGAATGCTCAACGACAAAGGCGTGAGATTTGGCAAGCTGCAAAGGATGAAGAAATGTGGAAGATAGAGGAAGATTATCCCCAAGACAAAATTTCACCACTATTTCCATCATTCAAGATAATATATTATAATATGCCCCATGAGCTAAGATTATGCTTTGTATATTGTTCAATCTTCCCTAAAGGAACTGTTATAGAAAAGAAGAAACTTATTCAGCAATGGATTGCACTTGACATGATTGAGTGTG
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| Protein seq | MVGAEMLVAAAVSQVARKINGIVGVAQGEVKLCCNFSDDLEGIKDTLVYLETLLKNAENNSFGSDRANLRHWLGQIKSLAYDIEDIVDGYYSSKEQFDGGSYAQKGSLFCSLSNPMLLKGSMVYKMKSKREMLQQRQQLPNQYHFLSHINSAVNFEEKQTTSYRNTDIAIVGRDADLDNLMDILMENSAEELSIISIVGPVGFGKTSLAQFVFNNTGTEVFSFRIWVHVSMGNINLEKIGRDIVSQTTEKIEGNMQLQSIKNAVQRVLNKYSCLIILDSLWGKDEEVNELKQMLLTGRHTESKIIVTTHSNKVAKLISTVPLYKLAALSEDDCLKIFSQRAMTGPGDPLFREYGEEIVRRCEGTPLVANFLGSVVNAQRQRREIWQAAKDEEMWKIEEDYPQDKISPLFPSFKIIYYNMPHELRLCFVYCSIFPKGTVIEKKKLIQQWIALDMIEC |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0327600 | OsNip_09t0327600-01 | Chr09 | 9672226 | 9674673 | - | RAP2018-11-26 | ||
| CDS seq | ATGGTTGGCGCCGAGATGCTTGTGGCCGCGGCGGTGAGCCAGGTCGCCCGGAAGATCAACGGCATCGTCGGCGTCGCGCAGGGCGAGGTGAAGCTGTGCTGCAATTTCAGCGACGATTTGGAGGGCATCAAGGATACCTTGGTGTACCTGGAAACCCTTCTGAAAAACGCCGAGAACAACTCCTTCGGAAGCGACAGGGCCAACCTGCGACACTGGCTCGGCCAGATCAAGTCCCTGGCTTACGACATCGAAGATATCGTTGATGGGTACTACTCTTCCAAGGAGCAGTTCGATGGGGGCAGCTATGCTCAGAAGGGGTCATTATTCTGCTCACTATCGAATCCAATGCTTCTGAAAGGTAGCATGGTTTATAAGATGAAGTCCAAGAGGGAGATGTTACAGCAAAGGCAACAATTGCCCAATCAGTATCATTTCCTTTCACATATCAACTCAGCAGTGAATTTTGAGGAGAAGCAAACAACATCATACAGAAATACTGACATTGCAATTGTTGGGAGGGATGCAGACTTAGATAATCTCATGGACATTTTAATGGAAAACAGCGCTGAAGAGCTTTCCATTATATCCATAGTTGGGCCTGTAGGTTTTGGGAAGACAAGCCTAGCACAGTTCGTTTTCAATAATACAGGAACAGAGGTATTCAGCTTTAGGATATGGGTTCATGTTTCCATGGGTAATATCAACCTTGAAAAAATTGGAAGAGATATAGTTTCACAAACTACAGAAAAAATTGAGGGAAATATGCAGCTGCAGTCAATCAAGAATGCTGTTCAGCGTGTGCTAAATAAATATAGTTGCTTGATCATATTAGATAGCCTTTGGGGAAAGGATGAAGAAGTGAATGAATTGAAGCAGATGTTGCTTACTGGTAGACATACAGAAAGCAAGATCATAGTGACCACTCATAGCAATAAAGTAGCTAAGCTGATTTCCACCGTTCCACTGTACAAGCTGGCAGCTTTATCTGAGGATGATTGTTTAAAAATATTCTCTCAAAGGGCAATGACAGGTCCGGGTGACCCGTTGTTCAGGGAATATGGAGAAGAAATCGTTAGAAGGTGTGAAGGCACACCCTTGGTAGCCAATTTTCTCGGTTCTGTGGTGAATGCTCAACGACAAAGGCGTGAGATTTGGCAAGCTGCAAAGGATGAAGAAATGTGGAAGATAGAGGAAGATTATCCCCAAGACAAAATTTCACCACTATTTCCATCATTCAAGATAATATATTATAATATGCCCCATGAGCTAAGATTATGCTTTGTATATTGTTCAATCTTCCCTAAAGGAACTGTTATAGAAAAGAAGAAACTTATTCAGCAATGGATTGCACTTGACATGATTGAGTGTG
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| Protein seq | MVGAEMLVAAAVSQVARKINGIVGVAQGEVKLCCNFSDDLEGIKDTLVYLETLLKNAENNSFGSDRANLRHWLGQIKSLAYDIEDIVDGYYSSKEQFDGGSYAQKGSLFCSLSNPMLLKGSMVYKMKSKREMLQQRQQLPNQYHFLSHINSAVNFEEKQTTSYRNTDIAIVGRDADLDNLMDILMENSAEELSIISIVGPVGFGKTSLAQFVFNNTGTEVFSFRIWVHVSMGNINLEKIGRDIVSQTTEKIEGNMQLQSIKNAVQRVLNKYSCLIILDSLWGKDEEVNELKQMLLTGRHTESKIIVTTHSNKVAKLISTVPLYKLAALSEDDCLKIFSQRAMTGPGDPLFREYGEEIVRRCEGTPLVANFLGSVVNAQRQRREIWQAAKDEEMWKIEEDYPQDKISPLFPSFKIIYYNMPHELRLCFVYCSIFPKGTVIEKKKLIQQWIALDMIEC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.171329 | 0.241243 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0372700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g15840 | RBH | 0.237217 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0327600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0005810 | SBH | 0.0 | 1.765312 | 0.213323 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0005880 | SBH | 0.720957 | 2.622652 | 1.946236 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0006020 | SBH | 0.0 | 2.430800 | 0.537634 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0005900 | SBH | 0.0 | 0.129723 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0006080 | SBH | 0.307378 | 0.000000 | 0.380343 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0171400 | SBH | 6.2774065 | 11.9017745 | 8.087226 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0006240 | SBH | 0.032545 | 0.147205 | 0.083622 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0149000 | SBH | 1.453213 | 4.887096 | 6.527761 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0006020 | SBH | 0.332341 | 0.245707 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0005900 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0005870 | SBH | 0.0 | 4.247732 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0005750 | SBH | 0.158900 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0005840 | SBH | 0.0 | 1.706603 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G006150 | SBH | 0.398392 | 1.643515 | 0.452895 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0006020 | SBH | 0.0 | 10.151697 | 0.435760 |
