Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0270700 | OGI:09015950 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:5276848-5278831 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATGGGAAGACTTTTCATCACATATATGATATGGATCGAATTAGTTTGGCAGAAAGATTAAGAGATCACCTGCAGTGCAAAAGTTATCTAATTTTCCTAGATGACATGTGGAGTCGAGATGCTTGGATATTCTTAAATCATGCATTTGCTACAAATAATAAAGGTGGACGGGTAATCATCACAACTAGAAATGAAGATGTTGCAATATTGGCTGATGAGGACCATTGTATTATGCTAAAGACTCTACAATGGAAGGAAGCATGGAATCTCTTTTCTAGAAAAGCCTTTCCTAGTCGAAAAGAAAATCAATGCCCTGAAAGTGTCGTACAATGGGCGGAGAAAATTGTGGATAAATGTAAAGGGTTGCCACTTGCAATAGTTGCTATTGGGAGTCTACTTTCCCACAAAAAGAAAGAAGAGAATGAATGGAAATTGTTTTATAACCAACTGAACTGGCAGCTGATCAATAACCCGGAGTTGAACTTTGTGATAGCTGTTCTGAATCTTAGCTTTGAGTATCTACCAAGCAATCTAAAATACTGCTTCCTGTATTGTGGCCTATTTCCTGAAGACTATCTGATTAAAAGAAAACAGATAATTAGATTTTGGATAGCTGAAGGTTTTGTTGAGGAAACTGGAGCCAATATTACTATGGAAGAACTAGCCGAAGAGTATCTCAAGGAGCTTGCCCAGCGTTCACTTCTTCATGTTGCAGAAAGAAATGTGTATGGAAGAGCAAAGTCATTCCAAATGCATAATCTTGTAAGAGATATGGTTGTCAGTAAATGCAAGACCTACAAGTTTTCTGATCTTGTGGTTGACCATTGTGTTACAAAACACAAATACAAGACGCGTCGTATATCAGTATTAGAAGCTGATCATGCCTCTGAAGCACCTACCTATGGAGAGAAGGTTCGCTCATTTATCCTGTTCGATAAGAAAGTACCTTACTCTTGGTTGGAAACTGCAAGTAGAGATTTTAGATTGCTAAGGGTGCTGTCCTTGAGAAGAGCAAGCATCCATAAGGTCCCTGATGTTGTGAGCAATTTGTTCAATTTGCGCTACCTTGATTTGGCCTATACAAGAGTTAAGGTGATTCCAAGATCACTGTGCCGACTGAACAAATTACAGATGTTGGACCTTTGGTTCACTGGCGTTGTCGAACTGCCTCGAGAAATAAAGCTGCTAACAGAGATTCGGTACATGGTTGCTACTGTCATGAGTGAAGATAATCACAGAATTTTCAACTGCTTCCTGCCAGTTCGATTTCCTTGCGAAGTTTGTCATCTCAAGGATTTACAGGTACTAGGATACATAGAGGCAAGCAAAGATATGATTTCTAATCTCAGAAACTTGAATCAACTGCGCAACCTTTTCATGATGAAAGTGGAGCATAATTATTTAACAGAGCTATGGGCCTCTATCAAAAGGATGCCAAATCTTGTCAGGTTGGATATAATCTCGTGCGACAGCGATGAAGTTTTCAACATGGAGCACTTGGACCCTCTTCCAGAATTGGAAACATTCCATCTTAGAGCAAAGTTACAAGATGGTGTTCTTCCCAAGATGTTTCATGGTCTTGTTAAAATCAGAGACCTGGAGATGGGGTGGTCAGGGTTACAAGTAGATCCCGTTTGTACCTTTTCACATATGTCGAACCTTACTGAATTGCGTCTTTACAGGGTTTATGAGGGGGTGCTTTTGAGCTTCCAAGCTGGTTTGTTTCCAAAACTCAAGAAACTCTCCTTGGCTGATATGGAGAACCTCACATGGATTGAAATGGAGGATGGCACCATGCAAAGCCTAAATTTTATTGCACTTATTGGTTTAAGAAACTTGAAGGTTGTGCCAGAAGGATTTCAATATCTAATGTCACTCCAAGAGATGTTCCTTCAGGATATGCCACAAGAGTTTATAAAGAGGGCACAAAGAGAAGACCGGGTTTACATCCAGCACATCCCTAAGATACGAAAATTTTGAC
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| CDS seq | ATGGATGGGAAGACTTTTCATCACATATATGATATGGATCGAATTAGTTTGGCAGAAAGATTAAGAGATCACCTGCAGTGCAAAAGTTATCTAATTTTCCTAGATGACATGTGGAGTCGAGATGCTTGGATATTCTTAAATCATGCATTTGCTACAAATAATAAAGGTGGACGGGTAATCATCACAACTAGAAATGAAGATGTTGCAATATTGGCTGATGAGGACCATTGTATTATGCTAAAGACTCTACAATGGAAGGAAGCATGGAATCTCTTTTCTAGAAAAGCCTTTCCTAGTCGAAAAGAAAATCAATGCCCTGAAAGTGTCGTACAATGGGCGGAGAAAATTGTGGATAAATGTAAAGGGTTGCCACTTGCAATAGTTGCTATTGGGAGTCTACTTTCCCACAAAAAGAAAGAAGAGAATGAATGGAAATTGTTTTATAACCAACTGAACTGGCAGCTGATCAATAACCCGGAGTTGAACTTTGTGATAGCTGTTCTGAATCTTAGCTTTGAGTATCTACCAAGCAATCTAAAATACTGCTTCCTGTATTGTGGCCTATTTCCTGAAGACTATCTGATTAAAAGAAAACAGATAATTAGATTTTGGATAGCTGAAGGTTTTGTTGAGGAAACTGGAGCCAATATTACTATGGAAGAACTAGCCGAAGAGTATCTCAAGGAGCTTGCCCAGCGTTCACTTCTTCATGTTGCAGAAAGAAATGTGTATGGAAGAGCAAAGTCATTCCAAATGCATAATCTTGTAAGAGATATGGTTGTCAGTAAATGCAAGACCTACAAGTTTTCTGATCTTGTGGTTGACCATTGTGTTACAAAACACAAATACAAGACGCGTCGTATATCAGTATTAGAAGCTGATCATGCCTCTGAAGCACCTACCTATGGAGAGAAGGTTCGCTCATTTATCCTGTTCGATAAGAAAGTACCTTACTCTTGGTTGGAAACTGCAAGTAGAGATTTTAGATTGCTAAGGGTGCTGTCCTTGAGAAGAGCAAGCATCCATAAGGTCCCTGATGTTGTGAGCAATTTGTTCAATTTGCGCTACCTTGATTTGGCCTATACAAGAGTTAAGGTGATTCCAAGATCACTGTGCCGACTGAACAAATTACAGATGTTGGACCTTTGGTTCACTGGCGTTGTCGAACTGCCTCGAGAAATAAAGCTGCTAACAGAGATTCGGTACATGGTTGCTACTGTCATGAGTGAAGATAATCACAGAATTTTCAACTGCTTCCTGCCAGTTCGATTTCCTTGCGAAGTTTGTCATCTCAAGGATTTACAGGTACTAGGATACATAGAGGCAAGCAAAGATATGATTTCTAATCTCAGAAACTTGAATCAACTGCGCAACCTTTTCATGATGAAAGTGGAGCATAATTATTTAACAGAGCTATGGGCCTCTATCAAAAGGATGCCAAATCTTGTCAGGTTGGATATAATCTCGTGCGACAGCGATGAAGTTTTCAACATGGAGCACTTGGACCCTCTTCCAGAATTGGAAACATTCCATCTTAGAGCAAAGTTACAAGATGGTGTTCTTCCCAAGATGTTTCATGGTCTTGTTAAAATCAGAGACCTGGAGATGGGGTGGTCAGGGTTACAAGTAGATCCCGTTTGTACCTTTTCACATATGTCGAACCTTACTGAATTGCGTCTTTACAGGGTTTATGAGGGGGTGCTTTTGAGCTTCCAAGCTGGTTTGTTTCCAAAACTCAAGAAACTCTCCTTGGCTGATATGGAGAACCTCACATGGATTGAAATGGAGGATGGCACCATGCAAAGCCTAAATTTTATTGCACTTATTGGTTTAAGAAACTTGAAGGTTGTGCCAGAAGGATTTCAATATCTAATGTCACTCCAAGAGATGTTCCTTCAGGATATGCCACAAGAGTTTATAAAGAGGGCACAAAGAGAAGACCGGGTTTACATCCAGCACATCCCTAAGATACGAAAATTTTGA
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| Protein seq | MDGKTFHHIYDMDRISLAERLRDHLQCKSYLIFLDDMWSRDAWIFLNHAFATNNKGGRVIITTRNEDVAILADEDHCIMLKTLQWKEAWNLFSRKAFPSRKENQCPESVVQWAEKIVDKCKGLPLAIVAIGSLLSHKKKEENEWKLFYNQLNWQLINNPELNFVIAVLNLSFEYLPSNLKYCFLYCGLFPEDYLIKRKQIIRFWIAEGFVEETGANITMEELAEEYLKELAQRSLLHVAERNVYGRAKSFQMHNLVRDMVVSKCKTYKFSDLVVDHCVTKHKYKTRRISVLEADHASEAPTYGEKVRSFILFDKKVPYSWLETASRDFRLLRVLSLRRASIHKVPDVVSNLFNLRYLDLAYTRVKVIPRSLCRLNKLQMLDLWFTGVVELPREIKLLTEIRYMVATVMSEDNHRIFNCFLPVRFPCEVCHLKDLQVLGYIEASKDMISNLRNLNQLRNLFMMKVEHNYLTELWASIKRMPNLVRLDIISCDSDEVFNMEHLDPLPELETFHLRAKLQDGVLPKMFHGLVKIRDLEMGWSGLQVDPVCTFSHMSNLTELRLYRVYEGVLLSFQAGLFPKLKKLSLADMENLTWIEMEDGTMQSLNFIALIGLRNLKVVPEGFQYLMSLQEMFLQDMPQEFIKRAQREDRVYIQHIPKIRKF |
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| Function | Disease resistance protein RPM1 [UniProtKB/Swiss-Prot:Q39214] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0270700 | OsNip_09t0270700-00 | Chr09 | 5276848 | 5278831 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATGGGAAGACTTTTCATCACATATATGATATGGATCGAATTAGTTTGGCAGAAAGATTAAGAGATCACCTGCAGTGCAAAAGTTATCTAATTTTCCTAGATGACATGTGGAGTCGAGATGCTTGGATATTCTTAAATCATGCATTTGCTACAAATAATAAAGGTGGACGGGTAATCATCACAACTAGAAATGAAGATGTTGCAATATTGGCTGATGAGGACCATTGTATTATGCTAAAGACTCTACAATGGAAGGAAGCATGGAATCTCTTTTCTAGAAAAGCCTTTCCTAGTCGAAAAGAAAATCAATGCCCTGAAAGTGTCGTACAATGGGCGGAGAAAATTGTGGATAAATGTAAAGGGTTGCCACTTGCAATAGTTGCTATTGGGAGTCTACTTTCCCACAAAAAGAAAGAAGAGAATGAATGGAAATTGTTTTATAACCAACTGAACTGGCAGCTGATCAATAACCCGGAGTTGAACTTTGTGATAGCTGTTCTGAATCTTAGCTTTGAGTATCTACCAAGCAATCTAAAATACTGCTTCCTGTATTGTGGCCTATTTCCTGAAGACTATCTGATTAAAAGAAAACAGATAATTAGATTTTGGATAGCTGAAGGTTTTGTTGAGGAAACTGGAGCCAATATTACTATGGAAGAACTAGCCGAAGAGTATCTCAAGGAGCTTGCCCAGCGTTCACTTCTTCATGTTGCAGAAAGAAATGTGTATGGAAGAGCAAAGTCATTCCAAATGCATAATCTTGTAAGAGATATGGTTGTCAGTAAATGCAAGACCTACAAGTTTTCTGATCTTGTGGTTGACCATTGTGTTACAAAACACAAATACAAGACGCGTCGTATATCAGTATTAGAAGCTGATCATGCCTCTGAAGCACCTACCTATGGAGAGAAGGTTCGCTCATTTATCCTGTTCGATAAGAAAGTACCTTACTCTTGGTTGGAAACTGCAAGTAGAGATTTTAGATTGCTAAGGGTGCTGTCCTTGAGAAGAGCAAGCATCCATAAGGTCCCTGATGTTGTGAGCAATTTGTTCAATTTGCGCTACCTTGATTTGGCCTATACAAGAGTTAAGGTGATTCCAAGATCACTGTGCCGACTGAACAAATTACAGATGTTGGACCTTTGGTTCACTGGCGTTGTCGAACTGCCTCGAGAAATAAAGCTGCTAACAGAGATTCGGTACATGGTTGCTACTGTCATGAGTGAAGATAATCACAGAATTTTCAACTGCTTCCTGCCAGTTCGATTTCCTTGCGAAGTTTGTCATCTCAAGGATTTACAGGTACTAGGATACATAGAGGCAAGCAAAGATATGATTTCTAATCTCAGAAACTTGAATCAACTGCGCAACCTTTTCATGATGAAAGTGGAGCATAATTATTTAACAGAGCTATGGGCCTCTATCAAAAGGATGCCAAATCTTGTCAGGTTGGATATAATCTCGTGCGACAGCGATGAAGTTTTCAACATGGAGCACTTGGACCCTCTTCCAGAATTGGAAACATTCCATCTTAGAGCAAAGTTACAAGATGGTGTTCTTCCCAAGATGTTTCATGGTCTTGTTAAAATCAGAGACCTGGAGATGGGGTGGTCAGGGTTACAAGTAGATCCCGTTTGTACCTTTTCACATATGTCGAACCTTACTGAATTGCGTCTTTACAGGGTTTATGAGGGGGTGCTTTTGAGCTTCCAAGCTGGTTTGTTTCCAAAACTCAAGAAACTCTCCTTGGCTGATATGGAGAACCTCACATGGATTGAAATGGAGGATGGCACCATGCAAAGCCTAAATTTTATTGCACTTATTGGTTTAAGAAACTTGAAGGTTGTGCCAGAAGGATTTCAATATCTAATGTCACTCCAAGAGATGTTCCTTCAGGATATGCCACAAGAGTTTATAAAGAGGGCACAAAGAGAAGACCGGGTTTACATCCAGCACATCCCTAAGATACGAAAATTTTGA
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| Protein seq | MDGKTFHHIYDMDRISLAERLRDHLQCKSYLIFLDDMWSRDAWIFLNHAFATNNKGGRVIITTRNEDVAILADEDHCIMLKTLQWKEAWNLFSRKAFPSRKENQCPESVVQWAEKIVDKCKGLPLAIVAIGSLLSHKKKEENEWKLFYNQLNWQLINNPELNFVIAVLNLSFEYLPSNLKYCFLYCGLFPEDYLIKRKQIIRFWIAEGFVEETGANITMEELAEEYLKELAQRSLLHVAERNVYGRAKSFQMHNLVRDMVVSKCKTYKFSDLVVDHCVTKHKYKTRRISVLEADHASEAPTYGEKVRSFILFDKKVPYSWLETASRDFRLLRVLSLRRASIHKVPDVVSNLFNLRYLDLAYTRVKVIPRSLCRLNKLQMLDLWFTGVVELPREIKLLTEIRYMVATVMSEDNHRIFNCFLPVRFPCEVCHLKDLQVLGYIEASKDMISNLRNLNQLRNLFMMKVEHNYLTELWASIKRMPNLVRLDIISCDSDEVFNMEHLDPLPELETFHLRAKLQDGVLPKMFHGLVKIRDLEMGWSGLQVDPVCTFSHMSNLTELRLYRVYEGVLLSFQAGLFPKLKKLSLADMENLTWIEMEDGTMQSLNFIALIGLRNLKVVPEGFQYLMSLQEMFLQDMPQEFIKRAQREDRVYIQHIPKIRKF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g09750 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0270700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0003250 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0003220 | RBH | 0.0 | 0.0 | 0.453693 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0003260 | RBH | 0.152908 | 0.814861 | 0.241995 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0003140 | RBH | 0.062246 | 0.085145 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0003310 | RBH | 0.763126 | 0.0 | 2.742213 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0086600 | RBH | 0.919614 | 2.025511 | 0.365921 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0003220 | RBH | 0.141301 | 0.0 | 0.227515 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0089500 | RBH | 1.346138 | 1.6959155 | 3.2056275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0003260 | RBH | 0.090739 | 0.044362 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0003270 | RBH | 0.133188 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0003280 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0003180 | RBH | 0.074650 | 0.0 | 0.335639 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0003290 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G003410 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0003320 | RBH | 0.0 | 0.0 | 0.0 |
