Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0268600 | OGI:09015570 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:5150258-5154230 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAAAGGTGATCATTGACCAGAAAACAAGTCACATAATAAAATCCTTGGTAACAACTAAATAAAGATAATTAACGACTGAGGAACACATGGATGAATTCTCTATGGGATCCATTGGTTGAGGGAAGTGTGCCCTAGACCTCTTCCCCTAACTGTGGTTCCTCTAGCATTTCCTCTTCCCTTGACTATAGTTCCTCTAGCATTTCCTCTTCCCCTGACTATAGTTTCTCTAGCATTTTCTCTTCCCCTGTCTGTAGTTCCTCTAGCATTTTCCTTCATGGTGCTTCCTATAGCACACCCCCTCCTTGAATCAAGTTTCCTTCCCCTGCTTGTTCCCCCTTCATTGATTGGCTGATATGAACTTGGTTGATGATTATTGATGTGATCTTGACTACTTGGCTCATGTGATCTTTGAGCTTGGTTTTCTGGCTCATGCGACCTTTTAGCCTATAGAAAAAAACAAACATTACAACATTGCAAAATGGAGTAATATTGAACTAAATCATAAAAGGAGAAATTTAGTATTGCCTTGAGAGCATCGAGTCTTATCTGCAGATCGGGCCTCAACTTTTTTTTGCAAGTCGTGTAGTTGTGGTACATCCCTTCACAATTAGTACATGTTGTGGTTGTCATTCTTGCTCTGCCGGTTACCTTGGGAGCTTCATCTTGACCCCTCCTCCTACTCTTCTTTGGTCTTCCTGGTTGCTTTGTGAACTTAGGAGGATCAATGTCAGGTGAATCAGTTGTTGTCCAATCATGCTCTCCTGGGACTGGATAGATAACTGGCGCATATGCTCGAAGGTAAGCTTCCTTCCTAAAGTGCTCATCGACATAATCCTCAGGCCTCTCTTTTGCTGCAAATATTGCCGTCACGGCATGCTTACAAGGTATTCCGGTAAGTTGCCATTTGTTACATCCACATGTTCTAGAAAATAAGTTGACCTCATACTGCCTCTCCGATCCTAAAATCTCCCACAAACCAACACCTGATTGATAAGCATTGCAGTACCTAGCATATTTCTTCTCTACCTCCAATTTCCCGACTACTACCGGGGTGATCTCCCACATTGCTTGTTGACCTCCGTCTCTCTTTTGATTTGCCCTGACCATTAGTTTTTGTCTAATTTTGTCAAGCATGGTTACGATGGGTTTGTCCCTAAGCTCAATAATGTAGTTGTTGAACACCTCACTAAGATTGTTCACAACTAGGTCTGTCCTGCTCCTAGAGGAGAAAGCATGTCTACTGAAATGTTCTTTGCCAAGATAATTAAGCCATTTCCATGCTTTGGCATTGAATGCCTTTAATGCATCCATTGCTCTGTTGTAATCATATTCAGTGTAAGCATAGACTGCAGAATCAACAAAGCTCTTGTATTTCTCTCCTCTATAACCAGCTGTTGCCATGTTTGCCAAGAGATGTCTTTTGCAATATCTATGCTCACAGTCTGGGAAAACTCTAGCCACTGCATTCATGAGCCCCTACATTGCACCCATTGTGACATAATATAAGTACTAGTTATACAAGTTACCAGCATTTAGAGAACACATAGGTAATACCTTCTGTCTGTATTGTCCATCCTCCATGCGCTTCTCCTCTACCGATGGCTGTCTCCAACCTCTCAAGAAACCAATTCCAGTTTTTTGTGTCTTCCTTTCCAACAACGCCAAATGCTATTGGGAATAGGTTATTTTTGCCATCCCTACCGGTAGCTGCTAGCACTTGGGCTCCATTACTGAGCTTTACAAAGCACCCATCAATGCCTGCCATTCATATGTAGACTTAGAATTATGGACATGACTCAGAAAAACTAAAAAAAGATGATAAAACTTACTTATGAATGGCCTACAACCATCGAGAAATCCCTGTCTCTGGGCATTCAAGCAGATGAAGAGACCATAAAATCTAGGATTCATTCCTAGAGCTATTCTATCCACAGTTGACACAACTGCTGTGCTCCCTGGGTTCTTATCAATGACAGTTTGCAGGTAATCTCTAATTCTCATGTATTGTTTTTTATGATTGCCAAGAACTTTTTCTCCTGCCTTTCTCTTAGCCCTGTATGCCATGGTCTTAGAAACATCAGTACCTAATTCTCTCATGCACTGATCTTGTAACGCACTAACCTTCCAATCAGGGTCACTTCTAAAATTTTCGAGGTATTTATAACTCAACCAAGTGCTATTCAACCTTGAATTCGCTCTCGTTGTCCCACATGTATGAGGTATCATCTCCCTCAGCATAAAAGTGTGCTCTCTAGCAATTCGAGACCCCCTCATGATGAATGGACAATTTTCTTCTTTGCATTTAACATTGACCCTACGGGGCTCATTTCTTGTGTATCTGTAGTCTCTTCCTTGGACAATGTGATAGGATTTTAAAGCCCTTCTATATTGGTCGACATTGGTAAAACACATAGCCTCCTGTAATTGTGTGGTGTCCATAATGTTATCTTCATCAAAGTAAATCCTCCTGTTAACCACCCTACTCTCTCTTCTTCTCCTCTTCCTCCTCTTAGCTTGTGCATCAAGTTTTTGACCATCATCGCTACTTTCATATTCAACAGCACTAGCCCCACCATCCTCACTTGGAGGATCAGAAAAAACAGTTTCCTCAACCTGAGAAGACCCCACATCATTTTGTCCTTTGACATTCCTACTCGCCTTAGTGCTATTCTTCTTTTGCAAATTTGATGATGCAACATCTGTACCATCTTGAATATTGACAACACCACATTGAGCCTTGTTTGATATTGCCTCTGCCACATCCTTAGAGTCCACCGGAACAACAGATAGAGCACTCCAATCAACAACAGGGACAAACAAATCCTCATCATCAGTATCACCTTCACAACGATTCCTAGGGTCAGCTCGTTGTCTCTTTATCTCCTGTAGCTTATGAATATAGTCAATCTTCTCTTGATCAAGGTCAAAATCATCATCGCTATATTCTGAGTCTTCATCTTCTTTACCATCAACAAAGAGAAATGTATTATCACCCTGGTCCATCCACAAGTCTTCATCACTGTTCTTCAACTGTTCAGATCCTTTTTCTTCTAAATCTCTATTTTTATTTGCCTCCACATTATCAGTGGCATCTGCAACAACATCCTCTTCTAGTGCACTGCTTGAGGCAACTTTTCTGTCAAAAATATGTATGTCAACTTTATTTATGCTATCGTTTTCCCTAAGCATGTCCATGACATTGCTGTCACCCTTGATTCTTGTCATTGATGTGCGGCAGTAACATCCAGGTTGGGCAAAAAATATTTCATCACTTTTCTGGTACCCAAGCTTCTCTATTATCTCAACCATATTGAAAAAGCAGACAAGGTCTCGATCCATTGGCTCCTCAACAACCATTGCCCCTGGACCACGATCATGCTTGAAAAACCGCAATGTCCAAACTTCTTCAGCCATTCTGATAATTAGAACATAACTTTCAGACCTAAATTCAGCTTGGAGATAAACAATAATATGTACATATAATTCAATTTACTGATGTAGACACAAGGATTTTGTTAACACATATACATATTGTGAGGTCTAAAAGGATTAGTTTAATAACCTATGAGTAAATGGTATCTCTTGGGTTGCTGTACCAGTCCACTATAAACATGGATTATATAACTGATTAGTAGAACATGTCTAAATTGTTTAGAAAATTATTATTGTCTTACTATCAGTATGTAAATTCGGTTCAGCTATATGGGATCCCCAATTATATAGTCATGAGCATCAAATCGATTTTGTGGTCATTTTGACTTTTAACCAAATTCCATAACACAAGACAGGAGCGTGGATGGTGACACAACAAAAGAGAGGAGATTGGAAACTGAGTAGCACAGAATAGCAGGACTAATGGGATGGAACTTACTCACTTGGCAAAGATGAACTCAGCGGCCGGCGCCGGTGCTGGCGTCAACACCCCGTCGTCCTCCGAAACGACAGAGATGAGGAGGCAGAATCGTGAGATCGT
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| CDS seq | ATGGAGGATGGACAATACAGACAGAAGGGGCTCATGAATGCAGTGGCTAGAGTTTTCCCAGACTGTGAGCATAGATATTGCAAAAGACATCTCTTGGCAAACATGGCAACAGCTGGTTATAGAGGAGAGAAATACAAGAGCTTTGTTGATTCTGCAGTCTATGCTTACACTGAATATGATTACAACAGAGCAATGGATGCATTAAAGGCATTCAATGCCAAAGCATGGAAATGGCTTAATTATCTTGGCAAAGAACATTTCAGTAGACATGCTTTCTCCTCTAGGAGCAGGACAGACCTAGTTGTGAACAATCTTAGTGAGGTGTTCAACAACTACATTATTGAGCTTAGGGACAAACCCATCGTAACCATGCTTGACAAAATTAGACAAAAACTAATGGTCAGGGCAAATCAAAAGAGAGACGGAGGTCAACAAGCAATGTGGGAGATCACCCCGGTAGTAGTCGGGAAATTGGAGGTAGAGAAGAAATATGCTAGGTACTGCAATGCTTATCAATCAGGTGTTGGTTTGTGGGAGATTTTAGGATCGGAGAGGCAGTATGAGGTCAACTTATTTTCTAGAACATGTGGATGTAACAAATGGCAACTTACCGGAATACCTTGTAAGCATGCCGTGACGGCAATATTTGCAGCAAAAGAGAGGCCTGAGGATTATGTCGATGAGCACTTTAGGAAGGAAGCTTACCTTCGAGCATATGCGCCAGTTATCTATCCAGTCCCAGGAGAGCATGATTGGACAACAACTGATTCACCTGACATTGATCCTCCTAAGTTCACAAAGCAACCAGGAAGACCAAAGAAGAGTAGGAGGAGGGGTCAAGATGAAGCTCCCAAGGTAACCGGCAGAGCAAGAATGACAACCACAACATGTACTAATTGTGAAGGGATGTACCACAACTACACGACTTGCAAAAAAAAGTTGAGGCCCGATCTGCAGATAAGACTCGATGCTCTCAAGGCTAAAAGGTCGCATGAGCCAGAAAACCAAGCTCAAAGATCACATGAGCCAAGTAGTCAAGATCACATCAATAATCATCAACCAAGTTCATATCAGCCAATCAATGAAGGGGGAACAAGCAGGGGAAGGAAACTTGATTCAAGGAGGGGGTGTGCTATAGGAAGCACCATGAAGGAAAATGCTAGAGGAACTACAGACAGGGGAAGAGAAAATGCTAGAGAAACTATAGTCAGGGGAAGAGGAAATGCTAGAGGAACTATAGTCAAGGGAAGAGGAAATGCTAGAGGAACCACAGTTAGGGGAAGAGGTCTAGGGCACACTTCCCTCAACCAATGGATCCCATAG
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| Protein seq | MEDGQYRQKGLMNAVARVFPDCEHRYCKRHLLANMATAGYRGEKYKSFVDSAVYAYTEYDYNRAMDALKAFNAKAWKWLNYLGKEHFSRHAFSSRSRTDLVVNNLSEVFNNYIIELRDKPIVTMLDKIRQKLMVRANQKRDGGQQAMWEITPVVVGKLEVEKKYARYCNAYQSGVGLWEILGSERQYEVNLFSRTCGCNKWQLTGIPCKHAVTAIFAAKERPEDYVDEHFRKEAYLRAYAPVIYPVPGEHDWTTTDSPDIDPPKFTKQPGRPKKSRRRGQDEAPKVTGRARMTTTTCTNCEGMYHNYTTCKKKLRPDLQIRLDALKAKRSHEPENQAQRSHEPSSQDHINNHQPSSYQPINEGGTSRGRKLDSRRGCAIGSTMKENARGTTDRGRENARETIVRGRGNARGTIVKGRGNARGTTVRGRGLGHTSLNQWIP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0268600 | OsNip_09t0268600-01 | Chr09 | 5150258 | 5154230 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGGATGGACAATACAGACAGAAGGGGCTCATGAATGCAGTGGCTAGAGTTTTCCCAGACTGTGAGCATAGATATTGCAAAAGACATCTCTTGGCAAACATGGCAACAGCTGGTTATAGAGGAGAGAAATACAAGAGCTTTGTTGATTCTGCAGTCTATGCTTACACTGAATATGATTACAACAGAGCAATGGATGCATTAAAGGCATTCAATGCCAAAGCATGGAAATGGCTTAATTATCTTGGCAAAGAACATTTCAGTAGACATGCTTTCTCCTCTAGGAGCAGGACAGACCTAGTTGTGAACAATCTTAGTGAGGTGTTCAACAACTACATTATTGAGCTTAGGGACAAACCCATCGTAACCATGCTTGACAAAATTAGACAAAAACTAATGGTCAGGGCAAATCAAAAGAGAGACGGAGGTCAACAAGCAATGTGGGAGATCACCCCGGTAGTAGTCGGGAAATTGGAGGTAGAGAAGAAATATGCTAGGTACTGCAATGCTTATCAATCAGGTGTTGGTTTGTGGGAGATTTTAGGATCGGAGAGGCAGTATGAGGTCAACTTATTTTCTAGAACATGTGGATGTAACAAATGGCAACTTACCGGAATACCTTGTAAGCATGCCGTGACGGCAATATTTGCAGCAAAAGAGAGGCCTGAGGATTATGTCGATGAGCACTTTAGGAAGGAAGCTTACCTTCGAGCATATGCGCCAGTTATCTATCCAGTCCCAGGAGAGCATGATTGGACAACAACTGATTCACCTGACATTGATCCTCCTAAGTTCACAAAGCAACCAGGAAGACCAAAGAAGAGTAGGAGGAGGGGTCAAGATGAAGCTCCCAAGGTAACCGGCAGAGCAAGAATGACAACCACAACATGTACTAATTGTGAAGGGATGTACCACAACTACACGACTTGCAAAAAAAAGTTGAGGCCCGATCTGCAGATAAGACTCGATGCTCTCAAGGCTAAAAGGTCGCATGAGCCAGAAAACCAAGCTCAAAGATCACATGAGCCAAGTAGTCAAGATCACATCAATAATCATCAACCAAGTTCATATCAGCCAATCAATGAAGGGGGAACAAGCAGGGGAAGGAAACTTGATTCAAGGAGGGGGTGTGCTATAGGAAGCACCATGAAGGAAAATGCTAGAGGAACTACAGACAGGGGAAGAGAAAATGCTAGAGAAACTATAGTCAGGGGAAGAGGAAATGCTAGAGGAACTATAGTCAAGGGAAGAGGAAATGCTAGAGGAACCACAGTTAGGGGAAGAGGTCTAGGGCACACTTCCCTCAACCAATGGATCCCATAG
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| Protein seq | MEDGQYRQKGLMNAVARVFPDCEHRYCKRHLLANMATAGYRGEKYKSFVDSAVYAYTEYDYNRAMDALKAFNAKAWKWLNYLGKEHFSRHAFSSRSRTDLVVNNLSEVFNNYIIELRDKPIVTMLDKIRQKLMVRANQKRDGGQQAMWEITPVVVGKLEVEKKYARYCNAYQSGVGLWEILGSERQYEVNLFSRTCGCNKWQLTGIPCKHAVTAIFAAKERPEDYVDEHFRKEAYLRAYAPVIYPVPGEHDWTTTDSPDIDPPKFTKQPGRPKKSRRRGQDEAPKVTGRARMTTTTCTNCEGMYHNYTTCKKKLRPDLQIRLDALKAKRSHEPENQAQRSHEPSSQDHINNHQPSSYQPINEGGTSRGRKLDSRRGCAIGSTMKENARGTTDRGRENARETIVRGRGNARGTIVKGRGNARGTTVRGRGLGHTSLNQWIP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0268600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004531 | RBH | 0.0 | 1.787578 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0084700 | RBH | 0.205008 | 0.1007975 | 0.023269 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0087600 | RBH | 0.003896 | 0.2272465 | 0.0028085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
