Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0133800 | OGI:09007520 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:2561882-2565526 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAAATACAATGCTCAGGTCGTGACATCATTAGACCATGACCAGTAAACCACACTTGGTCAAACTCATACATTAATCCCATACATCTTTCTCAATGTGGTTCAAAAACTCCACCAACATTCTTCCTAGTCCATCAAGTGGAAAAGTATTTCAGAATTCATCTTTTCCAGACCCATAGGATCAATAGCGCAATACAAGGACTAACTAATGTTGGCTCATTTACAAGCTGCCAAAGGCTACCAAATCTACTATCTAAAATGGGGAGCAAACTACTTTGCATCACCTAACCCTTGATTTGACATCAAAAGAAGGGCATGATCTACAAAAGTCACCTCATACTACTATAAATGCAGAGTCAAACCGTCAAGCTGTCAAGCCTTTGCTAACACTGTAGTAGCAGATATAAGTATGAAGGATAAGTTTATTTCGACATGTTTAAATGTTTCTTGATCATGTTCAAGATCTCCATAACCTGTTAAAGAGATAACACAATTGAGAACAAAGATATCAACTTAAAACGATATAGTAATTAGTAAAGAATAGAAACATCATAATTTATAACGCTATATTTGGATGGATGCTAGCAATTCCTAATCCAATAGCATGCTACGACCAGTAGTTAGACCTCAACATACATAAAACTCAATGTAAAGAAGCAGTTTTCATAGTTGTGGAAACAAAATAATGAAGTTCGGATTGAAATTCCTATTAGAAATTATGTTATATCAATTTTGTTTCTTTAGAGAGATTTCACTTCACTATCAAAACAGAGATGTACTAAGAACAGTATACTTACACCAGTGTAGTACTGCAAGACAGGAGAATAGTGATCGAGTGCAATATAAATTTTTGCAAGAAGATCTGTTAATGCCTCAACCTCATCACCAAGTAAATCTACCTGCAAAAAACAAGAAATCACACTCCTAATCCTCCTCATTTAAAGGCACTATCTAGGTAACTGACTGGTGCAGTTTCTAGGATAAGCAGTTGTTTGGAAACCAAAGATGTACCTCGAGCTCAGCTTTCTGAAGATTGGAGGCTCTTGTTTCAGATATTTCCTTGTATCTCAATGCCTTCTTTCTTAAAGTATTGCCTTCTTTTGCAAGGATTTTACATTGTTCTTTCAATAGACTAAACCTGTTTTGCATAAGTTCAACAAAGAAAAGTCATAGACAATAAGAATTGTAAATATAAATACAGCATAAGCAAACCCAAAATAAAGACAAAAGAAACTACTGGATGAATGGAAATACAGGCACCTTGATTCATTGTGCTGAACTTTGTGTGCAATGATAGTTTGTTGGTCTGTAACAAGCTTTTCAAAACCTCTCATAGATTCAACAACACATCTCATGCATTCTGTAAACTCCTTTTCTTTAGAAATGGATGATGAAAATCCCTTCTCCTTTTCTTTAATGATGGCATGTAAAACTTTATTTTGTTTCTCTACCTCCTTTTGAGAATCTGATACAGTCCTAAATCTATCATTTAACTCCTTCAGAGCAATCTCATTACGATGAACATGCTGCAGAGCTTGCTCCAACCTGCTAACAATGACATCAAAATCCCTGCACTTATCAGAAATGCCGGAATCTTGCTTTGCAACTTTGCCTCTTAGTGAATCAAGTTCATGGCGTAGAAAATCCAAATGATCCTCTATTGCTTTGAATTCAATCTGTGACAAATATTCCTCCTTCTCCCTTATCACTAAATTGAAGGTATCCACATTTAGCTTTAATTTGTCCATCTCTTGCATATGTAGAGATTGTGCTTCAGCACAGCTGTTTTCCTCGCTGTATTTTAACAAAAATGAATTAATGTTTGAAGCTGCTTCAGCTATGGCCTCTTTCTGAATAATTGACCAAAAGTCCAGATTCATATTAAACTCCATCTCATAACCATGCAATCCCATTTTTATTTCACTAATAAACTCTGTTACTAAAATCTTTTCTGTCTCTTCTCTAACTATGGTTACAATGCTGGCATCTTCAATATCAGATTCTAACCTCCTAATCTGATTCAGGTAATTTGTCTCAATGGGTGTGAAATGTGAAGCCTTAATTAGAGTAGTGCATTCTTCCTCTTCATTGTCAGTTGGAGCACCTTGCAACTGATGGTTGTGAGAATCTACAACCTTGATTTTGTCTTGTTGACCAGGAAATACATCACTCTTGATGCGGATGGTTCTTTTATTCTCCACAAGGACCTCATCCAATTTTGTAATAACTTCCCAAATTTTCTTCCTCATGAGCTCAAATTCTTTATTATTGCGTAAATGCCAGGGGTTAGGTCCTTCTTTTTTTAGGTTCTCCCGCTTTAGTCTAAATATCTCTTCCGTCTTCTCTTGCAAAGTCGAATCATGCTGCCGTTTCATTTGATTCATCATTTTATTGAAATGGGCTACCAACTCATCCCTATCCATGTGCTTCAGAACTGTTGGATCAATAAAAATATCTTCATTGGAGCCTTTAGAACCATTTTCCTTAGTTATACCATCTTTAGAGGATTTTTCATTCCCTCTATGCTTACTTTCATCTTCTGCGCCTTCAAAGTTGTTATAGTGTGATACTGAAAGCCCCCACTCAGAATTCAAGAGTGACTTAGAAAGAGTCACAAGCTGTTGGCGAAGGTTATAAATTTCTTCATAGAGTTTATCTCGGCCCTCAGATAAACTCAGGCCACTATTTCTGAATTGATGCAGCTTTTCGTTCAAGAATGCTATCTCTGCATCCTTAGATGCAATCTGGCGAGCTGATTCTTGCTCTACAGCACTTATAGTTCCCTTCATAACAGAGTCAGTAACATATCTTGAAACATGAAGACTGGTATTTAATTCATTCCAAATGGCGTCCAAGTCATCTACAATCAACTCATTTTCATCTGAAGGTTCTCCCTGGACAGTGGAGCTTCCATTCATATCGCTATGTGCTAATGGTACATCCAGGGTCTCCAGGCTCTCCGCCATGTTCCCACTGCAAAAAAGGGAAAAACAGAAAGGAGGATGACTAAAGCATCTCACTTCAACAGTATCCTATTTTATTAGAGTAATAACATGCATTGCCTCACTGCATCCTTAGAAATAGAACACCTCATCACCAAAGCTTCTAACATTGTACTCATATCTAAACACGAATTTGCCTTAAGCATATCAGTGGCAGATCTAACATGAGAGATGGGGGTTCAGTTGAACCCCCAAACATTTTTGGGAACCATCAAAACTGTTACTATTATTAAGGTTAAGGCAAAGTTCTAGAACAGAAGCTAGGGTTACCGCAAATTCGAGAAAAAGCGCGTGAGTAGATTGAGACGGGAAAGAGGATGTGAGTAACGGACGCGGCGGAAGCAGCAGGACGAGCGACGGCGAACCCTGCTCGCTCGCTCGCGCGATGGATGGGAATTGGCGGAGGCGGCGGTGGCGGAGGATGTGCGTAACGGACGCGGCGGAAGCAGAAGGACGAGCGACGCTCGCTCCTGGGATGGATGGGGATCGGCGGAGGCGGAGGCGGCGGCGGTGGTCAAGGGCAAACTCAGGATAACTCCCGCACGACGGAGGCGTCAAAATGGCGAGGGTAACTTGGTAATTTCGCCTAGCAATCAATCGACCCGGATTTTTTTTTTGACAGCAACTTTAGAACTTCATTAACCC
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| CDS seq | ATGGCGGAGAGCCTGGAGACCCTGGATGTACCATTAGCACATAGCGATATGAATGGAAGCTCCACTGTCCAGGGAGAACCTTCAGATGAAAATGAGTTGATTGTAGATGACTTGGACGCCATTTGGAATGAATTAAATACCAGTCTTCATGTTTCAAGATATGTTACTGACTCTGTTATGAAGGGAACTATAAGTGCTGTAGAGCAAGAATCAGCTCGCCAGATTGCATCTAAGGATGCAGAGATAGCATTCTTGAACGAAAAGCTGCATCAATTCAGAAATAGTGGCCTGAGTTTATCTGAGGGCCGAGATAAACTCTATGAAGAAATTTATAACCTTCGCCAACAGCTTGTGACTCTTTCTAAGTCACTCTTGAATTCTGAGTGGGGGCTTTCAGTATCACACTATAACAACTTTGAAGGCGCAGAAGATGAAAGTAAGCATAGAGGGAATGAAAAATCCTCTAAAGATGGTATAACTAAGGAAAATGGTTCTAAAGGCTCCAATGAAGATATTTTTATTGATCCAACAGTTCTGAAGCACATGGATAGGGATGAGTTGGTAGCCCATTTCAATAAAATGATGAATCAAATGAAACGGCAGCATGATTCGACTTTGCAAGAGAAGACGGAAGAGATATTTAGACTAAAGCGGGAGAACCTAAAAAAAGAAGGACCTAACCCCTGGCATTTACGCAATAATAAAGAATTTGAGCTCATGAGGAAGAAAATTTGGGAAGTTATTACAAAATTGGATGAGGTCCTTGTGGAGAATAAAAGAACCATCCGCATCAAGAGTGATGTATTTCCTGGTCAACAAGACAAAATCAAGGTTGTAGATTCTCACAACCATCAGTTGCAAGGTGCTCCAACTGACAATGAAGAGGAAGAATGCACTACTCTAATTAAGGCTTCACATTTCACACCCATTGAGACAAATTACCTGAATCAGATTAGGAGGTTAGAATCTGATATTGAAGATGCCAGCATTGTAACCATAGTTAGAGAAGAGACAGAAAAGATTTTAGTAACAGAGTTTATTAGTGAAATAAAAATGGGATTGCATGGTTATGAGATGGAGTTTAATATGAATCTGGACTTTTGGTCAATTATTCAGAAAGAGGCCATAGCTGAAGCAGCTTCAAACATTAATTCATTTTTGTTAAAATACAGCGAGGAAAACAGCTGTGCTGAAGCACAATCTCTACATATGCAAGAGATGGACAAATTAAAGCTAAATGTGGATACCTTCAATTTAGTGATAAGGGAGAAGGAGGAATATTTGTCACAGATTGAATTCAAAGCAATAGAGGATCATTTGGATTTTCTACGCCATGAACTTGATTCACTAAGAGGCAAAGTTGCAAAGCAAGATTCCGGCATTTCTGATAAGTGCAGGGATTTTGATGTCATTGTTAGCAGGTTGGAGCAAGCTCTGCAGCATGTTCATCGTAATGAGATTGCTCTGAAGGAGTTAAATGATAGATTTAGGACTGTATCAGATTCTCAAAAGGAGGTAGAGAAACAAAATAAAGTTTTACATGCCATCATTAAAGAAAAGGAGAAGGGATTTTCATCATCCATTTCTAAAGAAAAGGAGTTTACAGAATGCATGAGATGTGTTGTTGAATCTATGAGAGGTTTTGAAAAGCTTGTTACAGACCAACAAACTATCATTGCACACAAAGTTCAGCACAATGAATCAAGGTTTAGTCTATTGAAAGAACAATGTAAAATCCTTGCAAAAGAAGGCAATACTTTAAGAAAGAAGGCATTGAGATACAAGGAAATATCTGAAACAAGAGCCTCCAATCTTCAGAAAGCTGAGCTCGAGGTAGATTTACTTGGTGATGAGGTTGAGGCATTAACAGATCTTCTTGCAAAAATTTATATTGCACTCGATCACTATTCTCCTGTCTTGCAGTACTACACTGGTGTTATGGAGATCTTGAACATGATCAAGAAACATTTAAACATGTCGAAATAA
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| Protein seq | MAESLETLDVPLAHSDMNGSSTVQGEPSDENELIVDDLDAIWNELNTSLHVSRYVTDSVMKGTISAVEQESARQIASKDAEIAFLNEKLHQFRNSGLSLSEGRDKLYEEIYNLRQQLVTLSKSLLNSEWGLSVSHYNNFEGAEDESKHRGNEKSSKDGITKENGSKGSNEDIFIDPTVLKHMDRDELVAHFNKMMNQMKRQHDSTLQEKTEEIFRLKRENLKKEGPNPWHLRNNKEFELMRKKIWEVITKLDEVLVENKRTIRIKSDVFPGQQDKIKVVDSHNHQLQGAPTDNEEEECTTLIKASHFTPIETNYLNQIRRLESDIEDASIVTIVREETEKILVTEFISEIKMGLHGYEMEFNMNLDFWSIIQKEAIAEAASNINSFLLKYSEENSCAEAQSLHMQEMDKLKLNVDTFNLVIREKEEYLSQIEFKAIEDHLDFLRHELDSLRGKVAKQDSGISDKCRDFDVIVSRLEQALQHVHRNEIALKELNDRFRTVSDSQKEVEKQNKVLHAIIKEKEKGFSSSISKEKEFTECMRCVVESMRGFEKLVTDQQTIIAHKVQHNESRFSLLKEQCKILAKEGNTLRKKALRYKEISETRASNLQKAELEVDLLGDEVEALTDLLAKIYIALDHYSPVLQYYTGVMEILNMIKKHLNMSK |
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| Function | WPP domain-associated protein [UniProtKB/Swiss-Prot:O64584] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0133800 | OsNip_09t0133800-01 | Chr09 | 2561882 | 2565526 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGGAGAGCCTGGAGACCCTGGATGTACCATTAGCACATAGCGATATGAATGGAAGCTCCACTGTCCAGGGAGAACCTTCAGATGAAAATGAGTTGATTGTAGATGACTTGGACGCCATTTGGAATGAATTAAATACCAGTCTTCATGTTTCAAGATATGTTACTGACTCTGTTATGAAGGGAACTATAAGTGCTGTAGAGCAAGAATCAGCTCGCCAGATTGCATCTAAGGATGCAGAGATAGCATTCTTGAACGAAAAGCTGCATCAATTCAGAAATAGTGGCCTGAGTTTATCTGAGGGCCGAGATAAACTCTATGAAGAAATTTATAACCTTCGCCAACAGCTTGTGACTCTTTCTAAGTCACTCTTGAATTCTGAGTGGGGGCTTTCAGTATCACACTATAACAACTTTGAAGGCGCAGAAGATGAAAGTAAGCATAGAGGGAATGAAAAATCCTCTAAAGATGGTATAACTAAGGAAAATGGTTCTAAAGGCTCCAATGAAGATATTTTTATTGATCCAACAGTTCTGAAGCACATGGATAGGGATGAGTTGGTAGCCCATTTCAATAAAATGATGAATCAAATGAAACGGCAGCATGATTCGACTTTGCAAGAGAAGACGGAAGAGATATTTAGACTAAAGCGGGAGAACCTAAAAAAAGAAGGACCTAACCCCTGGCATTTACGCAATAATAAAGAATTTGAGCTCATGAGGAAGAAAATTTGGGAAGTTATTACAAAATTGGATGAGGTCCTTGTGGAGAATAAAAGAACCATCCGCATCAAGAGTGATGTATTTCCTGGTCAACAAGACAAAATCAAGGTTGTAGATTCTCACAACCATCAGTTGCAAGGTGCTCCAACTGACAATGAAGAGGAAGAATGCACTACTCTAATTAAGGCTTCACATTTCACACCCATTGAGACAAATTACCTGAATCAGATTAGGAGGTTAGAATCTGATATTGAAGATGCCAGCATTGTAACCATAGTTAGAGAAGAGACAGAAAAGATTTTAGTAACAGAGTTTATTAGTGAAATAAAAATGGGATTGCATGGTTATGAGATGGAGTTTAATATGAATCTGGACTTTTGGTCAATTATTCAGAAAGAGGCCATAGCTGAAGCAGCTTCAAACATTAATTCATTTTTGTTAAAATACAGCGAGGAAAACAGCTGTGCTGAAGCACAATCTCTACATATGCAAGAGATGGACAAATTAAAGCTAAATGTGGATACCTTCAATTTAGTGATAAGGGAGAAGGAGGAATATTTGTCACAGATTGAATTCAAAGCAATAGAGGATCATTTGGATTTTCTACGCCATGAACTTGATTCACTAAGAGGCAAAGTTGCAAAGCAAGATTCCGGCATTTCTGATAAGTGCAGGGATTTTGATGTCATTGTTAGCAGGTTGGAGCAAGCTCTGCAGCATGTTCATCGTAATGAGATTGCTCTGAAGGAGTTAAATGATAGATTTAGGACTGTATCAGATTCTCAAAAGGAGGTAGAGAAACAAAATAAAGTTTTACATGCCATCATTAAAGAAAAGGAGAAGGGATTTTCATCATCCATTTCTAAAGAAAAGGAGTTTACAGAATGCATGAGATGTGTTGTTGAATCTATGAGAGGTTTTGAAAAGCTTGTTACAGACCAACAAACTATCATTGCACACAAAGTTCAGCACAATGAATCAAGGTTTAGTCTATTGAAAGAACAATGTAAAATCCTTGCAAAAGAAGGCAATACTTTAAGAAAGAAGGCATTGAGATACAAGGAAATATCTGAAACAAGAGCCTCCAATCTTCAGAAAGCTGAGCTCGAGGTAGATTTACTTGGTGATGAGGTTGAGGCATTAACAGATCTTCTTGCAAAAATTTATATTGCACTCGATCACTATTCTCCTGTCTTGCAGTACTACACTGGTGTTATGGAGATCTTGAACATGATCAAGAAACATTTAAACATGTCGAAATAA
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| Protein seq | MAESLETLDVPLAHSDMNGSSTVQGEPSDENELIVDDLDAIWNELNTSLHVSRYVTDSVMKGTISAVEQESARQIASKDAEIAFLNEKLHQFRNSGLSLSEGRDKLYEEIYNLRQQLVTLSKSLLNSEWGLSVSHYNNFEGAEDESKHRGNEKSSKDGITKENGSKGSNEDIFIDPTVLKHMDRDELVAHFNKMMNQMKRQHDSTLQEKTEEIFRLKRENLKKEGPNPWHLRNNKEFELMRKKIWEVITKLDEVLVENKRTIRIKSDVFPGQQDKIKVVDSHNHQLQGAPTDNEEEECTTLIKASHFTPIETNYLNQIRRLESDIEDASIVTIVREETEKILVTEFISEIKMGLHGYEMEFNMNLDFWSIIQKEAIAEAASNINSFLLKYSEENSCAEAQSLHMQEMDKLKLNVDTFNLVIREKEEYLSQIEFKAIEDHLDFLRHELDSLRGKVAKQDSGISDKCRDFDVIVSRLEQALQHVHRNEIALKELNDRFRTVSDSQKEVEKQNKVLHAIIKEKEKGFSSSISKEKEFTECMRCVVESMRGFEKLVTDQQTIIAHKVQHNESRFSLLKEQCKILAKEGNTLRKKALRYKEISETRASNLQKAELEVDLLGDEVEALTDLLAKIYIALDHYSPVLQYYTGVMEILNMIKKHLNMSK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0133800 | OsNip_09t0133800-02 | Chr09 | 2561963 | 2563517 | - | RAP2018-11-26 | ||
| CDS seq | CGCCATGAACTTGATTCACTAAGAGGCAAAGTTGCAAAGCAAGATTCCGGCATTTCTGATAAGTGCAGGGATTTTGATGTCATTGTTAGCAGGTTGGAGCAAGCTCTGCAGCATGTTCATCGTAATGAGATTGCTCTGAAGGAGTTAAATGATAGATTTAGGACTGTATCAGATTCTCAAAAGGAGGTAGAGAAACAAAATAAAGTTTTACATGCCATCATTAAAGAAAAGGAGAAGGGATTTTCATCATCCATTTCTAAAGAAAAGGAGTTTACAGAATGCATGAGATGTGTTGTTGAATCTATGAGAGGTTTTGAAAAGCTTGTTACAGACCAACAAACTATCATTGCACACAAAGTTCAGCACAATGAATCAAGGTGCCTGTATTTCCATTCATCCAGTAGTTTCTTTTGTCTTTATTTTGGGTTTGCTTATGCTGTATTTATATTTACAATTCTTATTGTCTATGACTTTTCTTTGTTGAACTTATGCAAAACAGGTTTAGTCTATTGA
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| Protein seq | RHELDSLRGKVAKQDSGISDKCRDFDVIVSRLEQALQHVHRNEIALKELNDRFRTVSDSQKEVEKQNKVLHAIIKEKEKGFSSSISKEKEFTECMRCVVESMRGFEKLVTDQQTIIAHKVQHNESRCLYFHSSSSFFCLYFGFAYAVFIFTILIVYDFSLLNLCKTGLVY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.074043 | 3.092014 | 3.683501 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g04810 | RBH | 1.968930 | 1.499199 | 0.923475 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0133800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0001630 | RBH | 0.605409 | 2.959554 | 5.500328 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0001600 | RBH | 0.473125 | 1.860730 | 1.891963 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0001630 | RBH | 2.198235 | 8.083785 | 6.202494 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0001530 | RBH | 0.579298 | 0.179967 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0001690 | RBH | 10.425344 | 13.940379 | 10.603758 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0038700 | RBH | 4.9866185 | 9.6854215 | 9.1243885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0001670 | RBH | 1.076340 | 0.392967 | 1.185799 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0049400 | RBH | 5.066083 | 9.9575445 | 18.327462 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0001630 | RBH | 0.533905 | 0.091948 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0001660 | RBH | 1.175888 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0001740 | RBH | 13.238911 | 5.912875 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0001640 | RBH | 1.337658 | 0.0 | 2.174120 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0001660 | RBH | 0.519665 | 6.444807 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G001690 | RBH | 1.111648 | 2.655796 | 3.787961 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0001680 | RBH | 4.413132 | 26.557318 | 5.158259 |
