Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0543600 | OGI:08077480 | 4/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:27210441-27217016 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAAAAAACGCTGGTACTGTATAGATGCTGGCTAAAATTCAACAGTTTAAAATGTGGCGTAACACCATGGAAGGGCACAGATGCTATCATTCGGGTGCCCCACGCCACGGCACGCAGGCATAGACAAGTTACAATGGTTGCAAAACTTCCTCAGTATTTTCTGATCGGGAACTAGTTTCAGTACAACTTGCCAAAACATGGCCCAATACAGGCGCTGCGAAAAGCAATTGGTGCGGAATTAAATTCACAACAATTCATTCTGGTCATCTTCGACTTCAACCCTTTTAAACCTTAAACCAAAACATAGCTTCACATGATTTGCTCACTGCCCTTCAAACCAACTGGACCTGCAATGAGAGAAAAAAAATTGAAGCATGTGATGCTGAGTTCCATATACAAACAACGTGTGTCAGATAATACTCTACATATAGCCTGATAAAAGAAACTAGACGCCGATGTAAAATGTATATGGTACTGTAGTTTGCTAATTACTCTCATTCAACACTATGGTACTATACTTGTCTAATTCTAAACCTTCTACTCCCTCCATTTCAAATTGCTTGTCATTCTAGATTTGTCCTAAGTCAAACATATACTTTGACAATTAATTTTTGGAAATCCATGTAGTTTAATAACATGTCAATTACTTATTATGAAAGTATTTCTCATGGTGAATTTAAAAATATAAATCTCATGATGTTAAACTATATGAGTATATTGAAATTGGCGGTCAAAGATTAAAATGATTACTTAGGACAAACGTAAAACGACAAGTAATTTGAAATAGAGGGTGTATGAGCTAACATCACCTATATCCAATTGCCTCTAGAAACAGAATAACAGTAGTAAATAAATCTACAAAAGCATAGTAACTTGACTAACTTCTAAACAAAAAATAACTACTCCGTAATTACCAAAATAGCAATAGCAGCTCCTACTTTTTACACCAGAGTATGAAATCGTACCGAACGACAAGCCACTTGCTCATCTTCTGGAAATGTATGCAGGCCCCGTAGACCTGGTACATACAAGGAATTTACAGTAAATCAGCACTAAGAAACAAGAAAGACTGTCTAACTACAATAACACATAAAAATGGTTCATACCTTCCCTGTTGCTTCCCACCATAACCATGCCTGGTATTACCTGCAGGAAGGCCAGATCGTTCCTGTCTGACTCCATTTGCAGAAACAGCATGCATGGATGACTGCCCAGGTCGAACTTCATCTGAAAAGCCATTCTCCTGGATGTCTTTTACTTTACTTGCAATTGTTACATCACCAATCCCCTGAACAATGTTATAACCAACACTATCGTTGGGTTTTGGGATATGTCCACCCTTGTCAAACTGATCTCCAAAGCTAGCAGTGGTAGACCCATTTCTAGATGGCATTACATTTGAAGATCTGGAATCAACAACAGGTCCTCTCTTTTGCCTAGTGCTTTGTGCCACGGGAGTGACAGCAACTGAAGGTAACAATGAGTAAGGAGCCGAAGATGCAACAGCGGCAATTTTGGCGGCAGCTGTAGTAGCTGAAATGATCTGCTGTGCTCCTTCCCGAAGGTGAATGAAGTCTCCTTCAATCACAAAGAGCTGCAGAACAAACACAACAATCAATAACAAGAATTACCCACGGTTATTTTACTTAATGATTGTGAAAATAGACCTCTGGATGGCTAGCCACAAAATCATCTAGCTTCCCATAGTGCTTCTTATAGTCATGCCAATGAAGAGGAGCCAACATTTTGCCAAGCCTATTTGGTAGCTGAAAAAAAAATTTGCACATGAGTCAGTAAATGTTCCATTAGACAACAATATATACAGTTCCCACTAGTCAGGAACTCAATCATAAGCATGCATGTATAACTCACAGTTGTGCTAATCTTGATTCGGCCATCAGGTCCAGCAGGAACTGCACGTACAATGCAAGCCAGAAGGGATCTCTCATCTAGAAGGGAAGGCTCCTTTGGTATGCGAGGTAAGAGTGAACCCAAACCACCACCAGCAGAAGTATGCGTGTCAGTCTGATTCCCAACGTTAGCAGTGAACTCTGCTGCACCACCTTTCAAGTGGATTTGAGTAGTTGATGCATCAAAATCTGAAGCTTTATGCTGATGCCTAGCTACCTGCTCCTCCGACTGGTTGCCCGATGCAACTTTTTCATCCTGGTGTACATAGAGCTTTGATATAAGATGCTTACACATCAAATAGAAATTTACAAAAGAAACAATGGTAAATATTTTAACCTTGAATTCATTTGTTTGCTCTTGATGTTCAAATTTTCGAATAGGGCTGACAATTGAAGATGAATCCTGGGCCTTTTGTTGCTCATTGTAAACTAAATGTTCAGTTACATTGGATTCCACAACCTGTAACTGTTCTAGAAAGAATTAGATTTTAAACAGTGTTAAATTGTATGAGTACACAAAACGAACAACAAGAAAACAGACTAGTAACCTTTTGTTCATGAGTGGATTCAGAAACCACACTTGGGAAACGTTGTTGTTGCTGTTGTTTCCCATGGGCTGTAGCTGTAAGATGTTCTGCACGGGTTGCCTGATTCTGCTTCAAAGAAAGCTCATCATTATTACCAGCAGCTTGTTGCAATGCCTTCTGATCTGGTGGGGATGTGTGATAGTTTGTTTCATCTGGTGTCTGAGAGGCATTCTGAGCTTCCTAATTGACAAAAAAATTGTTTCCGCGTTAGAAATTATAGGTGGTCAAAATGTCAACAGAAACAGGATACAATAATAAAATGCTACACAGTATTGTGTACCTGTTGATTGGGCCACTGCATGTTTGGTTGAATTGTCGACTGTGACTGGAAACTACCAAACTGAGGAACAGCGGAGTTAGGCGATGCTAAAGATGGAGGAACACCTTGAGGATGCATCATATAAGAATGCATCCCGGCAATCTGCGCAGAAGGAACAAAACCACCTATACCCAACAGTGATGAAGGAACAACAGGTACAGGAGAGGCATTACTGTTTCCCTGAAAGCAACAAATATTGCAGTTCCATTGAGAATATTCTTCTTGAGTGAAATAGAAGTGTCCACATAAACCAATATGATACAGTTTAACTGAATAGAAGTAAGACCAACACAAATCATGGATACTGACCACATACTAAGGAAGTCGACTGACCAATATCAAACTATATTTTGCACCTTCCATGATAAGCACTGAAAAATGTTTCAGGAAGCTACAATAAAAAACAACCATACGTCCATACCTTTGTGGAACAATCTGGAACTCCATTACTTTTCACTGACTGACTACTATCTGTTGTTCCACTACCATTTGCAGCCATGTTGTTCCCTTTGTTCTGACCAAGTGTTGACTCGGCCGAACTCTCCTGTGCAGTTTGTGAACCATCTTTTGGTGCTCCAGTTCGGTCTCTTAATTCATTTAGTTCTAGCTGAAGTTGTTGTATGGTATGCAGAAAACCCCTTTGCATCTCAACATACTGGGGAAAAGCAAGAGGACAGGGTGAAGAGAATGTTAATATAACGCAGTCAAGACATACGCAAACAGTAGAATGAAGGCATCTAATGAACCACACATCGTACCTGTTGTTGGAAACTAATCCAATATTGATTGAATTGCTCAGTACGATCACGTAACTCAGCTTGCATTGTCTGAGACTGTAAAGTATCCATTTCTTGAACTCGTGCCATCCAAGCATGAGCTTCCCTCAATTGTTCATCTTTGTAAATAATGTTATCTTGAGCAGCCCTATGCTGTAAATAAAATGCTCGTCAGGGAGTGGCTGGATGCTAATTTGAGGAAGGCAATCATGCAACAAAATTATTGACCATTGATTTAGAAATTCTCACAAAGAAATAAATGTTAGATTGTTCATGCATGGATACAAAGCACTAGCTCAATGCCTCAATGTTGATAATGCTTTAATATTCTCCCTGAAGGTAAGACTATATTTGCAGCAACAGAAAAACAAGGAGAAGCCATGTCATTGGAAAGGAATTAAAACTATCATAAAGTGTTTAAAACCCTAGTTCAACAATATACATTGCATAACATTAGAAATGAACTGCAGTAAACTCATCCTATGATACTAAGTTACACTTTCTGTAAGAGTCTATCATGTTAATCATTCAAAAGTGAATAACTAGGATACTGTTATAAGCACATTGTCAGTAAAGATGTTTATGTATCTTTTGTAGTATGACTATGCGCATAGAGACATACAGTCATACACAATCTAAAATAGAATGGAAACAAGAGGGTTGAAAAAAGAATACCTGTTCCTCTAATGCAAGCATTTGGCTTTCCTTTTCTCGCAGATGTTCTTGGAGATCATGGATTTGTTTAAGATGCTGTGCCCTTTCAGCTTCAGAATTGTCACGTTCCCTTCTGCAGAAGATAAGAAAATACCAAACACATTTTATTTTCTACAACAAAGATTTTGCTCAAACCAAAAAAAAAATGTCCTGGTCAGGGATTGCAAATGACTACATGATTTTTTTTATTTGTTATGTTCTTTTGCACAATAAAACTATTTTATCATGCATAAATGGGCATCACATGATTCACAAAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGGGAATCAACATCACATGCGGGTTTTTCATTGAGTAAGAAAACAAGCAATTCAGCAAGTCCATAAACAACTCTAATACTTTGATGAGGTGCAACTCAGCTGCTTTGTTGCTCTAACTAGTAATAAATACGGTCATCCCACATGATACTGAAATGAATCAGTAGTACCTAAAAGTTGCAAGCTCTTTTGTCTGTTCTCTAAGAAGATCTTGATTTGCCCACACCTGCCAAAAGGAAACAAAGATGGTGAGAGATCACAACCTCTAAATCTCACTGGTGCAACACAGAGCACTAACCGTTTGATGGTCAATCTTCAAAGCATCCAGTTCCCTGTCCTTGTCATCCAATTTCATTTCGAGCTCAAGGATGTACTTTTCCCGTTCATGCAGTTGTTCCTGTACAATTCGAAATCAGTATTTTTTTTCCCACTAAAAAGGACAAGGCAATCTGCAGTATGTACATCAATCATGTAATGTACCCCCTCCATCCCAGATTATAAGGGATTTAGGATGGATGGGATAGGGGCACATCCTAGTACTGCGAATCTGGACAGACTACTAGGATGTGTACCATCTATCCTAAATCCCTTTATATTTTGGGACAGAGGGAGTATAGATCATGACTTGTGTGTGAACCGTAAACTAACATTACTTGAGCTAACAAGCAAGGCACTGCACGCATCAAATCAAACACAATAACAGATATACTCAGTCAACAACAGAACACCACATAACCATCATTAAGGTATTAGCCAAAATTTGGTAAAAAAGAATAAATGCATAAATTTATCACAGCATAAAGAAATATTTGATACTACGTACTTCATTCTGTAAGAAGCAGCAAAGAAGCTACCGAGGTCACCCACTAAGCAACATCCTAGACATCAAAATAAAAAGGAACAATTCCCACTTCACGACAGTGTAACCATCTGTAGCAATACTGATCATCATGCCAACAGAAATAATGAATGAGTGAGTAGCACTCATAAGCAGCCAATAACCGCAGTACAGGCCAAATCATGTGCAATTAGTAAGTTACATGTACTCAGTTCCCACCTAATGCATGATACGACTGGCAACACGAAGTGCGTGTAAGTGGAAAGCAAAATCAGAACCTTCAGCTTTGCCGCGGCCGTTACATGCTCCTTGGCAGCAGCCTCGAAGCTGCGCTGCGCCTCGATGATCTGCGGGTGGGCGATGACCTGAGCTCGCAGCTCCATCTCAAGCCGCTGAAGCTCCTCCCGCTGATGCACGACGCTCTGCAGGCGCTGCTGGATGATGTCCTCGCTGAGGCCCCCGCTTCCGTCGATGGTGATCGAGCAGTAATCATCCAGTCTTCCACCCCCGTCCTGCAGCAAAACAAAAAGAAAAAAACAATCCATCGATCGTCTCAAACCGCTCCACAGCTCAATCCACAAACCAAAAACAACACGGGTGGCGATGACGAAGGGAGAAGTGTGGCGCGCACGCACCTCGTACATGGCTCTGTCCTCGGATTGCCCCATCTTGCCATGCTCCCCGGGATCCTGCGCACCAAGCAACAACAACAACAGCACAGCACAGATGAGTACACTCACCAGCAGCAGCAGCAACCAAGGGATGGGAGGGGAGGGGAGGGGAACCGACGTCGGCGCCATTGGAGCGGAGCGGGGCGTCGGGGACGGCGCGCCACTCCTTGCGCGCCGCCGCGGCGTCCATCCCTGCGCGCGGGGCCCCTTCCCCCCACAAGCGGGATCGGGATCTGGGCGACGGGGGGTGCTAGGGTTTTGGGGGTCCCTATCTCTCCCCCGCACGCGCGGGGTCGGGGTCGAGGCGGGGAGCGACGTCGCCCTCACCGCGGTCAAGCTGGAGCGCGAGCGTGGCGGTGGCGGTGGCGGTGGTGGTGGCGATGGCTAGGGTTTACGGCGGCCGCGGCGGATGGAGGAGGAAGAGGAGGCGATCGGACAGAGAGGAGAAAAGCGGGGGATTTGGGTCGGGGCCGAGGCGTGT
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| CDS seq | ATGGACGCCGCGGCGGCGCGCAAGGAGTGGCGCGCCGTCCCCGACGCCCCGCTCCGCTCCAATGGCGCCGACGATCCCGGGGAGCATGGCAAGATGGGGCAATCCGAGGACAGAGCCATGTACGAGGACGGGGGTGGAAGACTGGATGATTACTGCTCGATCACCATCGACGGAAGCGGGGGCCTCAGCGAGGACATCATCCAGCAGCGCCTGCAGAGCGTCGTGCATCAGCGGGAGGAGCTTCAGCGGCTTGAGATGGAGCTGCGAGCTCAGGTCATCGCCCACCCGCAGATCATCGAGGCGCAGCGCAGCTTCGAGGCTGCTGCCAAGGAGCATGTAACGGCCGCGGCAAAGCTGAAGGAACAACTGCATGAACGGGAAAAGTACATCCTTGAGCTCGAAATGAAATTGGATGACAAGGACAGGGAACTGGATGCTTTGAAGATTGACCATCAAACGGTGTGGGCAAATCAAGATCTTCTTAGAGAACAGACAAAAGAGCTTGCAACTTTTAGAAGGGAACGTGACAATTCTGAAGCTGAAAGGGCACAGCATCTTAAACAAATCCATGATCTCCAAGAACATCTGCGAGAAAAGGAAAGCCAAATGCTTGCATTAGAGGAACAGCATAGGGCTGCTCAAGATAACATTATTTACAAAGATGAACAATTGAGGGAAGCTCATGCTTGGATGGCACGAGTTCAAGAAATGGATACTTTACAGTCTCAGACAATGCAAGCTGAGTTACGTGATCGTACTGAGCAATTCAATCAATATTGGATTAGTTTCCAACAACAGTATGTTGAGATGCAAAGGGGTTTTCTGCATACCATACAACAACTTCAGCTAGAACTAAATGAATTAAGAGACCGAACTGGAGCACCAAAAGATGGTTCACAAACTGCACAGGAGAGTTCGGCCGAGTCAACACTTGGTCAGAACAAAGGGAACAACATGGCTGCAAATGGTAGTGGAACAACAGATAGTAGTCAGTCAGTGAAAAGTAATGGAGTTCCAGATTGTTCCACAAAGGGAAACAGTAATGCCTCTCCTGTACCTGTTGTTCCTTCATCACTGTTGGGTATAGGTGGTTTTGTTCCTTCTGCGCAGATTGCCGGGATGCATTCTTATATGATGCATCCTCAAGGTGTTCCTCCATCTTTAGCATCGCCTAACTCCGCTGTTCCTCAGTTTGGTAGTTTCCAGTCACAGTCGACAATTCAACCAAACATGCAGTGGCCCAATCAACAGGAAGCTCAGAATGCCTCTCAGACACCAGATGAAACAAACTATCACACATCCCCACCAGATCAGAAGGCATTGCAACAAGCTGCTGGTAATAATGATGAGCTTTCTTTGAAGCAGAATCAGGCAACCCGTGCAGAACATCTTACAGCTACAGCCCATGGGAAACAACAGCAACAACAACGTTTCCCAAGTGTGGTTTCTGAATCCACTCATGAACAAAAGTTACAGGTTGTGGAATCCAATGTAACTGAACATTTAGTTTACAATGAGCAACAAAAGGCCCAGGATTCATCTTCAATTGTCAGCCCTATTCGAAAATTTGAACATCAAGAGCAAACAAATGAATTCAAGGATGAAAAAGTTGCATCGGGCAACCAGTCGGAGGAGCAGGTAGCTAGGCATCAGCATAAAGCTTCAGATTTTGATGCATCAACTACTCAAATCCACTTGAAAGGTGGTGCAGCAGAGTTCACTGCTAACGTTGGGAATCAGACTGACACGCATACTTCTGCTGGTGGTGGTTTGGGTTCACTCTTACCTCGCATACCAAAGGAGCCTTCCCTTCTAGATGAGAGATCCCTTCTGGCTTGCATTGTACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTCTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTATAAGAAGCACTATGGGAAGCTAGATGATTTTGTGGCTAGCCATCCAGAGCTCTTTGTGATTGAAGGAGACTTCATTCACCTTCGGGAAGGAGCACAGCAGATCATTTCAGCTACTACAGCTGCCGCCAAAATTGCCGCTGTTGCATCTTCGGCTCCTTACTCATTGTTACCTTCAGTTGCTGTCACTCCCGTGGCACAAAGCACTAGGCAAAAGAGAGGACCTGTTGTTGATTCCAGATCTTCAAATGTAATGCCATCTAGAAATGGGTCTACCACTGCTAGCTTTGGAGATCAGTTTGACAAGGGTGGACATATCCCAAAACCCAACGATAGTGTTGGTTATAACATTGTTCAGGGGATTGGTGATGTAACAATTGCAAGTAAAGTAAAAGACATCCAGGAGAATGGCTTTTCAGATGAAGTTCGACCTGGGCAGTCATCCATGCATGCTGTTTCTGCAAATGGAGTCAGACAGGAACGATCTGGCCTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGGTCTACGGGGCCTGCATACATTTCCAGAAGATGA
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| Protein seq | MDAAAARKEWRAVPDAPLRSNGADDPGEHGKMGQSEDRAMYEDGGGRLDDYCSITIDGSGGLSEDIIQQRLQSVVHQREELQRLEMELRAQVIAHPQIIEAQRSFEAAAKEHVTAAAKLKEQLHEREKYILELEMKLDDKDRELDALKIDHQTVWANQDLLREQTKELATFRRERDNSEAERAQHLKQIHDLQEHLREKESQMLALEEQHRAAQDNIIYKDEQLREAHAWMARVQEMDTLQSQTMQAELRDRTEQFNQYWISFQQQYVEMQRGFLHTIQQLQLELNELRDRTGAPKDGSQTAQESSAESTLGQNKGNNMAANGSGTTDSSQSVKSNGVPDCSTKGNSNASPVPVVPSSLLGIGGFVPSAQIAGMHSYMMHPQGVPPSLASPNSAVPQFGSFQSQSTIQPNMQWPNQQEAQNASQTPDETNYHTSPPDQKALQQAAGNNDELSLKQNQATRAEHLTATAHGKQQQQQRFPSVVSESTHEQKLQVVESNVTEHLVYNEQQKAQDSSSIVSPIRKFEHQEQTNEFKDEKVASGNQSEEQVARHQHKASDFDASTTQIHLKGGAAEFTANVGNQTDTHTSAGGGLGSLLPRIPKEPSLLDERSLLACIVRAVPAGPDGRIKISTTLPNRLGKMLAPLHWHDYKKHYGKLDDFVASHPELFVIEGDFIHLREGAQQIISATTAAAKIAAVASSAPYSLLPSVAVTPVAQSTRQKRGPVVDSRSSNVMPSRNGSTTASFGDQFDKGGHIPKPNDSVGYNIVQGIGDVTIASKVKDIQENGFSDEVRPGQSSMHAVSANGVRQERSGLPAGNTRHGYGGKQQGRSTGPAYISRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0543600 | OsNip_08t0543600-01 | Chr08 | 27210441 | 27217016 | - | RAP2018-11-26 | ||
| CDS seq | ATGGACGCCGCGGCGGCGCGCAAGGAGTGGCGCGCCGTCCCCGACGCCCCGCTCCGCTCCAATGGCGCCGACGATCCCGGGGAGCATGGCAAGATGGGGCAATCCGAGGACAGAGCCATGTACGAGGACGGGGGTGGAAGACTGGATGATTACTGCTCGATCACCATCGACGGAAGCGGGGGCCTCAGCGAGGACATCATCCAGCAGCGCCTGCAGAGCGTCGTGCATCAGCGGGAGGAGCTTCAGCGGCTTGAGATGGAGCTGCGAGCTCAGGTCATCGCCCACCCGCAGATCATCGAGGCGCAGCGCAGCTTCGAGGCTGCTGCCAAGGAGCATGTAACGGCCGCGGCAAAGCTGAAGGAACAACTGCATGAACGGGAAAAGTACATCCTTGAGCTCGAAATGAAATTGGATGACAAGGACAGGGAACTGGATGCTTTGAAGATTGACCATCAAACGGTGTGGGCAAATCAAGATCTTCTTAGAGAACAGACAAAAGAGCTTGCAACTTTTAGAAGGGAACGTGACAATTCTGAAGCTGAAAGGGCACAGCATCTTAAACAAATCCATGATCTCCAAGAACATCTGCGAGAAAAGGAAAGCCAAATGCTTGCATTAGAGGAACAGCATAGGGCTGCTCAAGATAACATTATTTACAAAGATGAACAATTGAGGGAAGCTCATGCTTGGATGGCACGAGTTCAAGAAATGGATACTTTACAGTCTCAGACAATGCAAGCTGAGTTACGTGATCGTACTGAGCAATTCAATCAATATTGGATTAGTTTCCAACAACAGTATGTTGAGATGCAAAGGGGTTTTCTGCATACCATACAACAACTTCAGCTAGAACTAAATGAATTAAGAGACCGAACTGGAGCACCAAAAGATGGTTCACAAACTGCACAGGAGAGTTCGGCCGAGTCAACACTTGGTCAGAACAAAGGGAACAACATGGCTGCAAATGGTAGTGGAACAACAGATAGTAGTCAGTCAGTGAAAAGTAATGGAGTTCCAGATTGTTCCACAAAGGGAAACAGTAATGCCTCTCCTGTACCTGTTGTTCCTTCATCACTGTTGGGTATAGGTGGTTTTGTTCCTTCTGCGCAGATTGCCGGGATGCATTCTTATATGATGCATCCTCAAGGTGTTCCTCCATCTTTAGCATCGCCTAACTCCGCTGTTCCTCAGTTTGGTAGTTTCCAGTCACAGTCGACAATTCAACCAAACATGCAGTGGCCCAATCAACAGGAAGCTCAGAATGCCTCTCAGACACCAGATGAAACAAACTATCACACATCCCCACCAGATCAGAAGGCATTGCAACAAGCTGCTGGTAATAATGATGAGCTTTCTTTGAAGCAGAATCAGGCAACCCGTGCAGAACATCTTACAGCTACAGCCCATGGGAAACAACAGCAACAACAACGTTTCCCAAGTGTGGTTTCTGAATCCACTCATGAACAAAAGTTACAGGTTGTGGAATCCAATGTAACTGAACATTTAGTTTACAATGAGCAACAAAAGGCCCAGGATTCATCTTCAATTGTCAGCCCTATTCGAAAATTTGAACATCAAGAGCAAACAAATGAATTCAAGGATGAAAAAGTTGCATCGGGCAACCAGTCGGAGGAGCAGGTAGCTAGGCATCAGCATAAAGCTTCAGATTTTGATGCATCAACTACTCAAATCCACTTGAAAGGTGGTGCAGCAGAGTTCACTGCTAACGTTGGGAATCAGACTGACACGCATACTTCTGCTGGTGGTGGTTTGGGTTCACTCTTACCTCGCATACCAAAGGAGCCTTCCCTTCTAGATGAGAGATCCCTTCTGGCTTGCATTGTACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTCTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTATAAGAAGCACTATGGGAAGCTAGATGATTTTGTGGCTAGCCATCCAGAGCTCTTTGTGATTGAAGGAGACTTCATTCACCTTCGGGAAGGAGCACAGCAGATCATTTCAGCTACTACAGCTGCCGCCAAAATTGCCGCTGTTGCATCTTCGGCTCCTTACTCATTGTTACCTTCAGTTGCTGTCACTCCCGTGGCACAAAGCACTAGGCAAAAGAGAGGACCTGTTGTTGATTCCAGATCTTCAAATGTAATGCCATCTAGAAATGGGTCTACCACTGCTAGCTTTGGAGATCAGTTTGACAAGGGTGGACATATCCCAAAACCCAACGATAGTGTTGGTTATAACATTGTTCAGGGGATTGGTGATGTAACAATTGCAAGTAAAGTAAAAGACATCCAGGAGAATGGCTTTTCAGATGAAGTTCGACCTGGGCAGTCATCCATGCATGCTGTTTCTGCAAATGGAGTCAGACAGGAACGATCTGGCCTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGGTCTACGGGGCCTGCATACATTTCCAGAAGATGA
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| Protein seq | MDAAAARKEWRAVPDAPLRSNGADDPGEHGKMGQSEDRAMYEDGGGRLDDYCSITIDGSGGLSEDIIQQRLQSVVHQREELQRLEMELRAQVIAHPQIIEAQRSFEAAAKEHVTAAAKLKEQLHEREKYILELEMKLDDKDRELDALKIDHQTVWANQDLLREQTKELATFRRERDNSEAERAQHLKQIHDLQEHLREKESQMLALEEQHRAAQDNIIYKDEQLREAHAWMARVQEMDTLQSQTMQAELRDRTEQFNQYWISFQQQYVEMQRGFLHTIQQLQLELNELRDRTGAPKDGSQTAQESSAESTLGQNKGNNMAANGSGTTDSSQSVKSNGVPDCSTKGNSNASPVPVVPSSLLGIGGFVPSAQIAGMHSYMMHPQGVPPSLASPNSAVPQFGSFQSQSTIQPNMQWPNQQEAQNASQTPDETNYHTSPPDQKALQQAAGNNDELSLKQNQATRAEHLTATAHGKQQQQQRFPSVVSESTHEQKLQVVESNVTEHLVYNEQQKAQDSSSIVSPIRKFEHQEQTNEFKDEKVASGNQSEEQVARHQHKASDFDASTTQIHLKGGAAEFTANVGNQTDTHTSAGGGLGSLLPRIPKEPSLLDERSLLACIVRAVPAGPDGRIKISTTLPNRLGKMLAPLHWHDYKKHYGKLDDFVASHPELFVIEGDFIHLREGAQQIISATTAAAKIAAVASSAPYSLLPSVAVTPVAQSTRQKRGPVVDSRSSNVMPSRNGSTTASFGDQFDKGGHIPKPNDSVGYNIVQGIGDVTIASKVKDIQENGFSDEVRPGQSSMHAVSANGVRQERSGLPAGNTRHGYGGKQQGRSTGPAYISRR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0543600 | OsNip_08t0543600-02 | Chr08 | 27210576 | 27213820 | - | RAP2018-11-26 | ||
| CDS seq | GGTTCACAAACTGCACAGGAGAGTTCGGCCGAGTCAACACTTGGTCAGAACAAAGGGAACAACATGGCTGCAAATGGTAGTGGAACAACAGATAGTAGTCAGTCAGTGAAAAGTAATGGAGTTCCAGATTGTTCCACAAAGGGAAACAGTAATGCCTCTCCTGTACCTGTTGTTCCTTCATCACTGTTGGGTATAGGTGGTTTTGTTCCTTCTGCGCAGATTGCCGGGATGCATTCTTATATGATGCATCCTCAAGGTGTTCCTCCATCTTTAGCATCGCCTAACTCCGCTGTTCCTCAGTTTGGTAGTTTCCAGTCACAGTCGACAATTCAACCAAACATGCAGTGGCCCAATCAACAGGAAGCTCAGAATGCCTCTCAGACACCAGATGAAACAAACTATCACACATCCCCACCAGATCAGAAGGCATTGCAACAAGCTGCTGGTAATAATGATGAGCTTTCTTTGAAGCAGAATCAGGCAACCCGTGCAGAACATCTTACAGCTACAGCCCATGGGAAACAACAGCAACAACAACGTTTCCCAAGTGTGGTTTCTGAATCCACTCATGAACAAAAGTTACAGGTTGTGGAATCCAATGTAACTGAACATTTAGTTTACAATGAGCAACAAAAGGCCCAGGATTCATCTTCAATTGTCAGCCCTATTCGAAAATTTGAACATCAAGAGCAAACAAATGAATTCAAGGATGAAAAAGTTGCATCGGGCAACCAGTCGGAGGAGCAGGTAGCTAGGCATCAGCATAAAGCTTCAGATTTTGATGCATCAACTACTCAAATCCACTTGAAAGGTGGTGCAGCAGAGTTCACTGCTAACGTTGGGAATCAGACTGACACGCATACTTCTGCTGGTGGTGGTTTGGGTTCACTCTTACCTCGCATACCAAAGGAGCCTTCCCTTCTAGATGAGAGATCCCTTCTGGCTTGCATTGTACGTGCAGTTCCTGCTGGACCTGATGGCCGAATCAAGATTAGCACAACTCTACCAAATAGGCTTGGCAAAATGTTGGCTCCTCTTCATTGGCATGACTATAAGAAGCACTATGGGAAGCTAGATGATTTTGTGGCTAGCCATCCAGAGCTCTTTGTGATTGAAGGAGACTTCATTCACCTTCGGGAAGGAGCACAGCAGATCATTTCAGCTACTACAGCTGCCGCCAAAATTGCCGCTGTTGCATCTTCGGCTCCTTACTCATTGTTACCTTCAGTTGCTGTCACTCCCGTGGCACAAAGCACTAGGCAAAAGAGAGGACCTGTTGTTGATTCCAGATCTTCAAATGTAATGCCATCTAGAAATGGGTCTACCACTGCTAGCTTTGGAGATCAGTTTGACAAGGGTGGACATATCCCAAAACCCAACGATAGTGTTGGTTATAACATTGTTCAGGGGATTGGTGATGTAACAATTGCAAGTAAAGTAAAAGACATCCAGGAGAATGGCTTTTCAGATGAAGTTCGACCTGGGCAGTCATCCATGCATGCTGTTTCTGCAAATGGAGTCAGACAGGAACGATCTGGCCTTCCTGCAGGTAATACCAGGCATGGTTATGGTGGGAAGCAACAGGGAAGGTCTACGGGGCCTGCATACATTTCCAGAAGATGA
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| Protein seq | GSQTAQESSAESTLGQNKGNNMAANGSGTTDSSQSVKSNGVPDCSTKGNSNASPVPVVPSSLLGIGGFVPSAQIAGMHSYMMHPQGVPPSLASPNSAVPQFGSFQSQSTIQPNMQWPNQQEAQNASQTPDETNYHTSPPDQKALQQAAGNNDELSLKQNQATRAEHLTATAHGKQQQQQRFPSVVSESTHEQKLQVVESNVTEHLVYNEQQKAQDSSSIVSPIRKFEHQEQTNEFKDEKVASGNQSEEQVARHQHKASDFDASTTQIHLKGGAAEFTANVGNQTDTHTSAGGGLGSLLPRIPKEPSLLDERSLLACIVRAVPAGPDGRIKISTTLPNRLGKMLAPLHWHDYKKHYGKLDDFVASHPELFVIEGDFIHLREGAQQIISATTAAAKIAAVASSAPYSLLPSVAVTPVAQSTRQKRGPVVDSRSSNVMPSRNGSTTASFGDQFDKGGHIPKPNDSVGYNIVQGIGDVTIASKVKDIQENGFSDEVRPGQSSMHAVSANGVRQERSGLPAGNTRHGYGGKQQGRSTGPAYISRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.526051 | 5.444726 | 12.513846 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g43060 | RBH | 2.814972 | 2.714452 | 2.987198 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0543600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024140 | RBH | 1.732030 | 26.420607 | 16.072418 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0023920 | RBH | 0.969579 | 8.985150 | 7.087388 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023920 | RBH | 3.604736 | 27.285320 | 26.510836 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024250 | SBH | 0.249556 | 1.124576 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0023900 | SBH | 12.274771 | 16.389172 | 32.021706 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0432600 | SBH | 9.1766085 | 23.671584 | 22.9253015 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0023750 | SBH | 0.826189 | 2.201469 | 4.107091 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0023130 | SBH | 0.478665 | 0.633483 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023500 | SBH | 0.644934 | 21.782745 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0023310 | SBH | 12.894600 | 39.710445 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024160 | SBH | 1.100236 | 1.350618 | 1.384155 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0023390 | SBH | 1.232043 | 17.987314 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023610 | SBH | 0.569591 | 12.786040 | 7.759024 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0023760 | SBH | 0.944427 | 39.552750 | 18.795977 |
