Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0525500 | OGI:08074550 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:26134848-26137324 | ||||||||
| Gene Symbol | RL1, OsRL1, OsEMP8, EMP8 | ||||||||||
| DNA seq | GAGGCCAAGGCCTTCGCGCTCCGGATGACCAAGGAGGGCGTCCTCCCCGATGTGGCCACATTCAACTCGCTCGCCGAGGCGCTTTGCAGCTCTGGAGATGTGGAATTCGCCGTGGCGCTTCTCGCCGATGCATCCAGCCGCGGCCTGTGCCCGGACATCTCCACCTACAAGGTGATGATACCAGCTGTGGCCAAGGCTGGCCGAATTGATGAGGCATTTCGGTTGTTCTATGCAGCTCTTGAGGATGGCCACCGGCCATTCCCCAGCCTGTATGCAGCGATTATCAAGGCGCTCTGTAAGGCGGGGCGATTCGCCGATGCTTTCGCATTTTTCGGTGATATGAAGTCGAAGGGGCACCCGCCAAATCGTCCTGTGTATGTGATGCTTGTTAAAATGTGTGTGAGAGGCGGTCGGTTCGTGGAGGCTGCAAACTACCTTGTTGAGATGAGTGAAGCTGGATTCGCTCCTCGTGCTCCGACCTTTAATTCTGTAGTTGACGGGTTGCGGCATTGTGGGAAGCATGATCTAGCTCAGAGGATGGAGCAGCTTGAGATGTCGATGAATGGGAATTGAATGGATTATGAACTGTATCCAGTTCTCTTTTTCCATTGGGCCTTGCAAATGGCATGGCAGTGCTCCTGGATTTCCAGGTATGATTGGAATATTGTATTTCCTCTTCTTTTGATTGTATGTCTTGCCATAAGAAATGCTGTTGGAGCATGTCTAATATGCCTGTGATGTGCTGATGTGTTTGCTATATTTTGTAGTAAGGCCACGGTTAACCTCACTAATCTGTTAGAAATTGTGTAGTGAAGGCAAACAGGATGACAGATTTGTGGTTGCATGCACAATAGATTTTAAATTTCTTATGTCCTGACACCTGAGGATGTTCAGCAGCATACTGGAACAAGTTCTTTTGCTATTTACTTAAACACCAGTTCTTGGCTTCTTGAAAATTCATGTGTCTTGAAACTGGGAACAAGTCACCACATATTATATTAGAGAACCCAGCTTAATGTTGTCAAAACCCCATATGCATTTTTTTATACTAATTGAGATGCAATGTACTCCTATGTTTTGCATAGTATTTAAGGTAGACAGACTAGATAAGAATGGTAATATACTTCAGTGATGAGTTGCAATGCCACCACTAAAAATAAGCTCCATATTTAGAAATTCTTTAAATTCTGCGTGTTGCCATAAGTGAATCCTATGCCGTTGGATCATGCCTAATATGCCTGTGATGTGTTTGCAATATTTGGTACTAAGGCCACACTTGGCTTCAGCTAATCTGTTAAAGTCGTGTAGTGAAGGCAAACAGAATGAATAATCTAAGGTTTGTGGTCATGCCCACAGTGGGATTTAAAATTTTCATGTCCTTAGGATGTTCAGCAGCGCAGTGGAAGTGTGGAACTAGTGCTTTTCCTATTCAAGTTAACACCAGTTCTGGACTTGTCGAAAATTATTAGAGAACCTGGGAACAGGTCACCTTGTATTATTATTAGAGAACCCAGTTTAATCCAGATGCATTTTTATATCTAATTAAGATTCAATGTACTATATAGTATTTAAGGTAGACAGACTTGAGAAGGATATGGTGTTGTATTTCACTGTTGAGTTGCAATGCCTCTACTAAAAATAAGCTCCATATTTAGAATTCTTGGTTGCTTTAATTTCCCTTATTGCTGAATACATGATATTGTAGAAGGTCTCATGCCGTAATTGGTTCATGCATCTCTTGCACTGCATCATCAGCACTCTTTGTTGGAACTGAGAATGAAATTGCCCACTATAAATCAACATAGTCCATGAAATGGTGTTTTCTTTTGAAATCATTACAGATGTTGTGTTCTTTGTACAATATTGTGCATAGCTCCTAAATTCTGCTAAACTTTCTATTATGTTGTTGGCAGGATCTCAGGTTGGCTTGATGAGGACTCCATAATTATCTGCAATTGATGGGGATGTTTGAATGTTGCACTTTGCTCGTGCCGTTTAGAATATTCTTACATTTGGATGTTCTAGAGCTAAACATAATCACGAGAATTGTGATGCTTCTATGGAATTGATCCTGCATCCAATAGGATAACACTGTAAATGAATCGATCAGACTGGCAGCAAGTCATAGAAAAGGGTGAATTCCTTATTGTACCAAAATTTTCATTTGGTTGCTGTTGTCTTGTGCATTAATGTAATTTTCACAATCTTGTAAGGAAGTGAGGTGAGTGTGGACTATGAGGAATTGTTGATGTAAACAGCGAAGCATAATCCTTGTGAACTGTGATTATCATTGGTTGCACTAAATAGCAGATTTAGGCATGCCTTCAAAACTGGGAAGTAGAGTGGGCTAAAGTAGGCACTAGGCAGTACTGGAATGTGGATACTGGATGTCTGGATGTTGAAGAAGGTGCAATCAGAACCCAATATGTAAATGATGCAGTGAAGAGTGATGCTGACGATCTTGTTTTGTTCCCTTT
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| CDS seq | GAGGCCAAGGCCTTCGCGCTCCGGATGACCAAGGAGGGCGTCCTCCCCGATGTGGCCACATTCAACTCGCTCGCCGAGGCGCTTTGCAGCTCTGGAGATGTGGAATTCGCCGTGGCGCTTCTCGCCGATGCATCCAGCCGCGGCCTGTGCCCGGACATCTCCACCTACAAGGTGATGATACCAGCTGTGGCCAAGGCTGGCCGAATTGATGAGGCATTTCGGTTGTTCTATGCAGCTCTTGAGGATGGCCACCGGCCATTCCCCAGCCTGTATGCAGCGATTATCAAGGCGCTCTGTAAGGCGGGGCGATTCGCCGATGCTTTCGCATTTTTCGGTGATATGAAGTCGAAGGGGCACCCGCCAAATCGTCCTGTGTATGTGATGCTTGTTAAAATGTGTGTGAGAGGCGGTCGGTTCGTGGAGGCTGCAAACTACCTTGTTGAGATGAGTGAAGCTGGATTCGCTCCTCGTGCTCCGACCTTTAATTCTGTAGTTGACGGGTTGCGGCATTGTGGGAAGCATGATCTAGCTCAGAGGATGGAGCAGCTTGAGATGTCGATGAATGGGAATTGA
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| Protein seq | EAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLRHCGKHDLAQRMEQLEMSMNGN |
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| Function | Pentatricopeptide repeat-containing protein At5g18390, mitochondrial [UniProtKB/Swiss-Prot:Q94JX6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0525500 | OsNip_08t0525500-01 | Chr08 | 26134848 | 26137173 | + | RAP2018-11-26 | ||
| CDS seq | GAGGCCAAGGCCTTCGCGCTCCGGATGACCAAGGAGGGCGTCCTCCCCGATGTGGCCACATTCAACTCGCTCGCCGAGGCGCTTTGCAGCTCTGGAGATGTGGAATTCGCCGTGGCGCTTCTCGCCGATGCATCCAGCCGCGGCCTGTGCCCGGACATCTCCACCTACAAGGTGATGATACCAGCTGTGGCCAAGGCTGGCCGAATTGATGAGGCATTTCGGTTGTTCTATGCAGCTCTTGAGGATGGCCACCGGCCATTCCCCAGCCTGTATGCAGCGATTATCAAGGCGCTCTGTAAGGCGGGGCGATTCGCCGATGCTTTCGCATTTTTCGGTGATATGAAGTCGAAGGGGCACCCGCCAAATCGTCCTGTGTATGTGATGCTTGTTAAAATGTGTGTGAGAGGCGGTCGGTTCGTGGAGGCTGCAAACTACCTTGTTGAGATGAGTGAAGCTGGATTCGCTCCTCGTGCTCCGACCTTTAATTCTGTAGTTGACGGGTTGCGGCATTGTGGGAAGCATGATCTAGCTCAGAGGATGGAGCAGCTTGAGATGTCGATGAATGGGAATTGA
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| Protein seq | EAKAFALRMTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYAALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLRHCGKHDLAQRMEQLEMSMNGN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0525500 | OsNip_08t0525500-02 | Chr08 | 26135225 | 26137324 | + | RAP2018-11-26 | ||
| CDS seq | ATGCTTGTTAAAATGTGTGTGAGAGGCGGTCGGTTCGTGGAGGCTGCAAACTACCTTGTTGAGATGAGTGAAGCTGGATTCGCTCCTCGTGCTCCGACCTTTAATTCTGTAGTTGACGGGTTGCGGCATTGTGGGAAGCATGATCTAGCTCAGAGGATGGAGCAGCTTGAGATGTCGATGAATGGGAATTGA |
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| Protein seq | MLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLRHCGKHDLAQRMEQLEMSMNGN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.111478 | 0.575753 | 1.067024 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0300200 | SBH | 0.000000 | 0.691744 | 3.520967 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g41380 | RBH | 0.624049 | 0.153718 | 0.104930 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0525500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022790 | RBH | 0.0 | 0.0 | 1.012153 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022660 | RBH | 0.0 | 0.0 | 0.290747 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0000560 | RBH | 0.274900 | 0.485085 | 0.778541 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0022730 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0022590 | RBH | 1.405401 | 3.132061 | 1.891641 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0416700 | RBH | 0.650362 | 2.4394505 | 1.497247 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0022460 | RBH | 0.0 | 0.069611 | 0.334435 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0437700 | RBH | 0.778813 | 2.1047155 | 3.094827 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021810 | RBH | 0.113330 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0022140 | RBH | 0.0 | 2.061809 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021990 | RBH | 2.148411 | 5.682279 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0022760 | RBH | 0.083822 | 0.0 | 0.314064 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0022150 | RBH | 0.0 | 0.632895 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G022300 | SBH | 0.071103 | 0.403367 | 0.885096 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0000540 | RBH | 0.000000 | 1.718111 | 0.170857 |
