Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0519000 | OGI:08073810 | 7/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:25764973-25766527 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGACGAAGAACAAGGCTTCGACTGTTGCGGAGAAGGTCCCGAAGAAGCCGCGCCGAGAGGACACGGCAACCGCGGACGGCGGCCCAACCGTCGAGGACGAACCCACCGTCGTCGCTCCAGGTTCTCCTCAGATCTTCATCTTCTGACTTTCTTTCATAGAATCATTTTGGAAGAAGAGGATTACTTTAGGGTTTCTGTGGGGATAAAGCTCCCGCATTTCTCTGATGATCTGATCCCTACGCCTTTCTCAACCCCTGCAGCCCCGGCCTCCCAGGTCCCAACAACCATAGCCGCCGAGAAAACGTGAGGAGCGGCATCGTCTGAGGTAACGAGAAAGTTTTCTGAGAAAATTAATTACTGGAAAATGCGAAACACACATCTTCTCTGTCCTGATTCTGTGATCTCTTTTCTATAGGTTGTCCCGAGTTCATCGGGGGCCTTGTTGTCTCCTTCTGCAAAAGGAACGGCTCCGTCGTCCTGGCGGCTCATCATGCCCCTTCCACCGAGCAGCGGGAAGGTGAGTTTTTCAACCGGAACGCTTTTCACTATCTTCGTCGTTATGCCGTATCCTTATCTTCTGATAACTGTAGGGTCCCGCAAAGCCCCTTGCCCCGCTGGTCCCTCTTTCAAAGCTGATCCCCATCACACAGTCGAGGTAAATTTTCCTGTTCGCTCGACTAGGTGCGCGGGATATTTTGATTTCTCCTGACGACGTCCTTTGTCGACCTCCTGTTTTAGAGCTTCCTCGACTACGTTGTCTTCGGGGAAAGATCAAGCTGCGGAAGCGGCTGTTGTTGCGGCGTCCGAATCGGCCCTGATGCTCCAAGTACGACCCCTCCCCTCCCGCAAATCTCCCGTCCTCGGAACTGGGTGGAGAAAATTGCGGAGGGGCGTCGTCTGCTCGAGGAAGGCGCCAAGGAGCTCTCGAGTTCAATTGCGAACTCGAGTACTCTTATTGATGCCGCGAATGAGAGGATGGACGACCTCTAGAAGAAACTGGAGGTGTCTGAGGCGGACCTCGCCAAGATGAAGGAGCTCTACGCCGGCTCCAATGACCGGTACAAGGGCCTGGAGGCACGATTGGACGAGCTCCACGGCCATATGGACGAGCTGAAGAAATCCCTCCGGGTTAGCTACACAGCCCTCCACCAAACTGCCACTAGTCTGGGAGAAGTGGAGGCTCCTGCTTTCGGGGACGAGACGTCCATGACGGCGGCCTTGGCGGAACTCGTGACAGTGCTGGAAAGCGTTGTCCCGAAGTATACCAGCCAAATGAGGGAGACTGCGACCACCGGAGTCCGTATTGGCGCGGCGCATATCCTCGCCTGCTTCAGGGCCAATTACCCGGAGCTGGACCTCGAGAACATCCTTCGCCATGGCGAGGCGAACTCGGGCCATCTCCAATTTGCGGAAGAGGTCGCCCCGATCGCCGACAGCATCCTCCCCTTCTATCAGGGGTAATTTTTATAACCCAGTGGTCTTAAAAGGCCTTGTAATATTTAAACTCTTAAGTACTCGATTCGGTACTCTGTGAGAATGTCTTGTCTTTCCTTG
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| CDS seq | ATGACGAAGAACAAGGCTTCGACTGTTGCGGAGAAGGTCCCGAAGAAGCCGCGCCGAGAGGACACGGCAACCGCGGACGGCGGCCCAACCGTCGAGGACGAACCCACCGTCGTCGCTCCAGGTTGTCCCGAGTTCATCGGGGGCCTTGTTGTCTCCTTCTGCAAAAGGAACGGCTCCGTCGTCCTGGCGGCTCATCATGCCCCTTCCACCGAGCAGCGGGAAGGGTCCCGCAAAGCCCCTTGCCCCGCTGGTCCCTCTTTCAAAGCTGATCCCCATCACACAGTCGAGAGCTTCCTCGACTACGTTGTCTTCGGGGAAAGATCAAGCTGCGGAAGCGGCTGTTGTTGCGGCGTCCGAATCGGCCCTGATGCTCCAAGTACGACCCCTCCCCTCCCGCAAATCTCCCGTCCTCGGAACTGGGTGGAGAAAATTGCGGAGGGGCGTCGTCTGCTCGAGGAAGGCGCCAAGGAGCTCTCGAGTTCAATTGCGAACTCGAGTACTCTTATTGATGCCGCGAATGAGAGGATGGACGACCTCTAG
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| Protein seq | MTKNKASTVAEKVPKKPRREDTATADGGPTVEDEPTVVAPGCPEFIGGLVVSFCKRNGSVVLAAHHAPSTEQREGSRKAPCPAGPSFKADPHHTVESFLDYVVFGERSSCGSGCCCGVRIGPDAPSTTPPLPQISRPRNWVEKIAEGRRLLEEGAKELSSSIANSSTLIDAANERMDDL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0519000 | OsNip_08t0519000-00 | Chr08 | 25764973 | 25765963 | + | RAP2018-11-26 | ||
| CDS seq | ATGACGAAGAACAAGGCTTCGACTGTTGCGGAGAAGGTCCCGAAGAAGCCGCGCCGAGAGGACACGGCAACCGCGGACGGCGGCCCAACCGTCGAGGACGAACCCACCGTCGTCGCTCCAGGTTGTCCCGAGTTCATCGGGGGCCTTGTTGTCTCCTTCTGCAAAAGGAACGGCTCCGTCGTCCTGGCGGCTCATCATGCCCCTTCCACCGAGCAGCGGGAAGGGTCCCGCAAAGCCCCTTGCCCCGCTGGTCCCTCTTTCAAAGCTGATCCCCATCACACAGTCGAGAGCTTCCTCGACTACGTTGTCTTCGGGGAAAGATCAAGCTGCGGAAGCGGCTGTTGTTGCGGCGTCCGAATCGGCCCTGATGCTCCAAGTACGACCCCTCCCCTCCCGCAAATCTCCCGTCCTCGGAACTGGGTGGAGAAAATTGCGGAGGGGCGTCGTCTGCTCGAGGAAGGCGCCAAGGAGCTCTCGAGTTCAATTGCGAACTCGAGTACTCTTATTGATGCCGCGAATGAGAGGATGGACGACCTCTAG
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| Protein seq | MTKNKASTVAEKVPKKPRREDTATADGGPTVEDEPTVVAPGCPEFIGGLVVSFCKRNGSVVLAAHHAPSTEQREGSRKAPCPAGPSFKADPHHTVESFLDYVVFGERSSCGSGCCCGVRIGPDAPSTTPPLPQISRPRNWVEKIAEGRRLLEEGAKELSSSIANSSTLIDAANERMDDL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0519000 | OsNip_08t0519000-01 | Chr08 | 25765721 | 25766527 | + | IsoSeq | ||
| CDS seq | ATGCTCCAAGTACGACCCCTCCCCTCCCGCAAATCTCCCGTCCTCGGAACTGGGTGGAGAAAATTGCGGAGGGGCGTCGTCTGCTCGAGGAAGGCGCCAAGGAGCTCTCGAGTTCAATTGCGAACTCGAGTACTCTTATTGATGCCGCGAATGAGAGGATGGACGACCTCTAGAAGAAACTGGAGGTGTCTGAGGCGGACCTCGCCA
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| Protein seq | MLQVRPLPSRKSPVLGTGWRKLRRGVVCSRKAPRSSRVQLRTRVLLLMPRMRGWTTSRRNWRCLRRTSP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.302533 | 0.619482 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g40700 | RBH | 0.000000 | 0.328169 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0519000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0022330 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0022220 | SBH | 0.000000 | 3.355242 | 0.664057 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0022110 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0022110 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0410600 | RBH | 1.2589065 | 0.649803 | 5.9916915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0022010 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0431700 | RBH | 1.345595 | 1.9528425 | 0.533686 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0021360 | SBH | 0.0 | 0.782181 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021660 | SBH | 0.018603 | 40.326168 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0021490 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0022310 | SBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021670 | SBH | 0.0 | 2.046373 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021840 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0022010 | SBH | 0.0 | 2.558226 | 1.113355 |
