Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0510101 | OGI:08072800 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:25310647-25311749 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTGCAGGGTGGCAAAGGTGAGCCACAGAGACACTTGTTGTGAACATAACAATCTGCCCCATGGTATGCCATGTACCTCCCCGTTGGTATCTCGCCACAGAGCTCGTTGTAGCTGACATTGCAGAACTTCAGATTTATATCCTTCAAGGATTTGGCCACCCTTCCCTTGATGCTGTTATGGCTCAGGTCCAAGTAGTTCAGATGGTGAGGAAACCTGACCTTTGTCATGTCAAACTCAAGCCGATTCCATGACAGATCGATCTTCGCCATCGGCTTTGCGATGTCAAACAAGAACAATGGGTTGATTACCGATGAGCTGGTTGTGTGAGAGATCAATGGTGTCAATGTCTCCATCGCCATAGTCATCTGGTATCTCTCCAGTGAGCTGGTTATTGGGCAGGATGAGGAATCTAGAGTTTCCGGGGCTGATCAATCATTCAGATTGATGATATTTTTAACCATATTATTTTTTAAGTAAAGTTGTCAAAAAAAATATCTACGTTTAGTTTGTTGTCAAATTTAATAAATACATAAGAAATCCAACCAAAATTTTGACAATATTACCATTTTGTCAAAATTTTAGTAAGATTTATTTTGGCTACAATCTGAACAGGCCCTCCATGAAACAATCCAGGAGGTATCGACCCGGTGAGCATGTTGCCACTGAGGTCGATTACTCTCAGGTTTGGGAGGAGACTCAAGGATTCAGGAATTGATCCATTCAATTTGCTGTTGGTGATGGACAGAGCACTGAGATTGGTCTTCACCAAGAAGTCCGGAATTGAGCCAGAGATTGATGTGCCAGAGATGAAAAGAAACTGAAGGTGACAGAGCTTCGCGAAGGAGGATGGAATGGGGCCATACATCCCTGCCATGGCCTCGAGCTGGATGGTCTGCAGCAATGGCAGATCACCCAATGCTGAAGGGATGGGTACCTTCACATTGAGTGAAGATAGACATGGCCAGTGTCGGAGCATATGATGCCAGAGTCCCAAGAACAGCAGTTGGTTGCTGGGAGCCATGAGGAGAGCTCATCAGGGTTGCCGAGTTGCTCCTTGATCTTCAGGAGAGAGGCACGGTCACTGCTGTCGCAGTCCATGGCGT
More
|
||||||||||
| CDS seq | ATGGCTCCCAGCAACCAACTGCTGTTCTTGGGACTCTGGCATCATATGCTCCGACACTGGCCATGTCTATCTTCACTCAATGTGAAGGTACCCATCCCTTCAGCATTGGGTGATCTGCCATTGCTGCAGACCATCCAGCTCGAGGCCATGGCAGGGATGTATGGCCCCATTCCATCCTCCTTCGCGAAGCTCTGTCACCTTCAGTTTCTTTTCATCTCTGGCACATCAATCTCTGGCTCAATTCCGGACTTCTTGGTGAAGACCAATCTCAGTGCTCTGTCCATCACCAACAGCAAATTGAATGGATCAATTCCTGAATCCTTGAGTCTCCTCCCAAACCTGAGAGTAATCGACCTCAGTGGCAACATGCTCACCGGGTCGATACCTCCTGGATTCCCCGGAAACTCTAGATTCCTCATCCTGCCCAATAACCAGCTCACTGGAGAGATACCAGATGACTATGGCGATGGAGACATTGACACCATTGATCTCTCACACAACCAGCTCATCGGTAATCAACCCATTGTTCTTGTTTGA
More
|
||||||||||
| Protein seq | MAPSNQLLFLGLWHHMLRHWPCLSSLNVKVPIPSALGDLPLLQTIQLEAMAGMYGPIPSSFAKLCHLQFLFISGTSISGSIPDFLVKTNLSALSITNSKLNGSIPESLSLLPNLRVIDLSGNMLTGSIPPGFPGNSRFLILPNNQLTGEIPDDYGDGDIDTIDLSHNQLIGNQPIVLV |
||||||||||
| Function | Polygalacturonase inhibitor 1 [UniProtKB/Swiss-Prot:Q8GT95] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0510101 | OsNip_08t0510101-00 | Chr08 | 25310647 | 25311749 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTCCCAGCAACCAACTGCTGTTCTTGGGACTCTGGCATCATATGCTCCGACACTGGCCATGTCTATCTTCACTCAATGTGAAGGTACCCATCCCTTCAGCATTGGGTGATCTGCCATTGCTGCAGACCATCCAGCTCGAGGCCATGGCAGGGATGTATGGCCCCATTCCATCCTCCTTCGCGAAGCTCTGTCACCTTCAGTTTCTTTTCATCTCTGGCACATCAATCTCTGGCTCAATTCCGGACTTCTTGGTGAAGACCAATCTCAGTGCTCTGTCCATCACCAACAGCAAATTGAATGGATCAATTCCTGAATCCTTGAGTCTCCTCCCAAACCTGAGAGTAATCGACCTCAGTGGCAACATGCTCACCGGGTCGATACCTCCTGGATTCCCCGGAAACTCTAGATTCCTCATCCTGCCCAATAACCAGCTCACTGGAGAGATACCAGATGACTATGGCGATGGAGACATTGACACCATTGATCTCTCACACAACCAGCTCATCGGTAATCAACCCATTGTTCTTGTTTGA
More
|
|||||||
| Protein seq | MAPSNQLLFLGLWHHMLRHWPCLSSLNVKVPIPSALGDLPLLQTIQLEAMAGMYGPIPSSFAKLCHLQFLFISGTSISGSIPDFLVKTNLSALSITNSKLNGSIPESLSLLPNLRVIDLSGNMLTGSIPPGFPGNSRFLILPNNQLTGEIPDDYGDGDIDTIDLSHNQLIGNQPIVLV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0491612 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g39940 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0510101 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0021710 | RBH | 0.0 | 2.518986 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0021600 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0021480 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021670 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0021530 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0404300 | RBH | 0 | 0.3546535 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0021410 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0423900 | RBH | 0 | 0.090212 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0020750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0021050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0020870 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0021720 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0021070 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G021210 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0021390 | RBH | 0.0 | 0.0 | 0.0 |
