Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0411850 | OGI:08057860 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:19701779-19702345 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAACTGGTACTGGTTCCCTCTAGTTGTTCAGTAGCATCATTGTCCTCATTCGTTGCCATATGTTCTTTCAGAAATTTTCTTACTTCAAGGGAGGGATGATTGGGGTGAAGATTAGCATGATTTCTTATGGCAACCTCCGCGACCTCCACCTCCCGTGCTGTTGCACCCGCACAATAAATGTCCACCAGGAACAATTTGAGGGAGGTCAGTTGATGGATGCTGAAATCAGACCCGCAACCCCGTTCAGGTACTGTAATATGAGCATGATATCTAATGTTTAACCGCTGGAGCTTTGGCATAACTCCTCCTTCAAATATCATACCTGGTCCACCCTTTTTGTCTTCAGCATACAAGAGAGAAAAATCCTTTAGACACTGGAATCCACCATGGCTGATGATCAGTGTTTCTTGATTGGATTCCCGTACTTCTAGATAGAGGTTTACCAAGACAGGCAAGTCTTTCAGTGGCTGCATATCTTCCTCTTCCAACTGTTCTAAACGGATATCTAGGTAGATGAGGGTGGAGAATGATGATATCCGTCTTGGAATCCTGTGGAAGTGCGCCAT
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| CDS seq | ATGGCGCACTTCCACAGGATTCCAAGACGGATATCATCATTCTCCACCCTCATCTACCTAGATATCCGTTTAGAACAGTTGGAAGAGGAAGATATGCAGCCACTGAAAGACTTGCCTGTCTTGGTAAACCTCTATCTAGAAGTACGGGAATCCAATCAAGAAACACTGATCATCAGCCATGGTGGATTCCAGTGTCTAAAGGATTTTTCTCTCTTGTATGCTGAAGACAAAAAGGGTGGACCAGGTATGATATTTGAAGGAGGAGTTATGCCAAAGCTCCAGCGGTTAAACATTAGATATCATGCTCATATTACAGTACCTGAACGGGGTTGCGGGTCTGATTTCAGCATCCATCAACTGACCTCCCTCAAATTGTTCCTGGTGGACATTTATTGTGCGGGTGCAACAGCACGGGAGGTGGAGGTCGCGGAGGTTGCCATAAGAAATCATGCTAATCTTCACCCCAATCATCCCTCCCTTGAAGTAAGAAAATTTCTGAAAGAACATATGGCAACGAATGAGGACAATGATGCTACTGAACAACTAGAGGGAACCAGTACCAGTTAG
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| Protein seq | MAHFHRIPRRISSFSTLIYLDIRLEQLEEEDMQPLKDLPVLVNLYLEVRESNQETLIISHGGFQCLKDFSLLYAEDKKGGPGMIFEGGVMPKLQRLNIRYHAHITVPERGCGSDFSIHQLTSLKLFLVDIYCAGATAREVEVAEVAIRNHANLHPNHPSLEVRKFLKEHMATNEDNDATEQLEGTSTS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0411850 | OsNip_08t0411850-00 | Chr08 | 19701779 | 19702345 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGCACTTCCACAGGATTCCAAGACGGATATCATCATTCTCCACCCTCATCTACCTAGATATCCGTTTAGAACAGTTGGAAGAGGAAGATATGCAGCCACTGAAAGACTTGCCTGTCTTGGTAAACCTCTATCTAGAAGTACGGGAATCCAATCAAGAAACACTGATCATCAGCCATGGTGGATTCCAGTGTCTAAAGGATTTTTCTCTCTTGTATGCTGAAGACAAAAAGGGTGGACCAGGTATGATATTTGAAGGAGGAGTTATGCCAAAGCTCCAGCGGTTAAACATTAGATATCATGCTCATATTACAGTACCTGAACGGGGTTGCGGGTCTGATTTCAGCATCCATCAACTGACCTCCCTCAAATTGTTCCTGGTGGACATTTATTGTGCGGGTGCAACAGCACGGGAGGTGGAGGTCGCGGAGGTTGCCATAAGAAATCATGCTAATCTTCACCCCAATCATCCCTCCCTTGAAGTAAGAAAATTTCTGAAAGAACATATGGCAACGAATGAGGACAATGATGCTACTGAACAACTAGAGGGAACCAGTACCAGTTAG
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| Protein seq | MAHFHRIPRRISSFSTLIYLDIRLEQLEEEDMQPLKDLPVLVNLYLEVRESNQETLIISHGGFQCLKDFSLLYAEDKKGGPGMIFEGGVMPKLQRLNIRYHAHITVPERGCGSDFSIHQLTSLKLFLVDIYCAGATAREVEVAEVAIRNHANLHPNHPSLEVRKFLKEHMATNEDNDATEQLEGTSTS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.437193 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0412100 | RBH | 0.840449 | 0.769904 | 1.208634 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31780 | RBH | 0.816819 | 0.411044 | 0.533179 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0411850 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015770 | SBH | 0.064029 | 0.0 | 0.979092 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015640 | SBH | 0.0 | 0.535282 | 0.160938 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015570 | SBH | 0.0 | 1.495378 | 1.323406 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015910 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015690 | SBH | 0.352825 | 1.159977 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0300000 | SBH | 1.532265 | 0.212281 | 10.199985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015650 | SBH | 0.0 | 0.053881 | 0.216831 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0335300 | SBH | 0.337285 | 1.0216885 | 4.9216485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015160 | SBH | 0.0 | 0.040953 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0015300 | SBH | 0.0 | 3.704883 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0015220 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0015940 | SBH | 0.0 | 0.000000 | 0.144417 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015330 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015460 | SBH | 0.0 | 0.299772 | 0.119596 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015570 | SBH | 0.0 | 0.0 | 0.547361 |
