Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0409500 | OGI:08057560 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:19610458-19612119 | ||||||||
| Gene Symbol | VQ33, OsVQ33 | ||||||||||
| DNA seq | AATCAAAACCTCTCCTCCCCTCTTCTGCTGCTGCTACTACTACTGGTCTACTGCCTCTCGCCTCGCCTCCCTCACGTTGGATCCCGTGGAGTTGAGATGATTCGTAGGGAGGCGTAGGTTGTGGTCGTTGTTGCGGTTTGGAGTTGCACCGGCGAGATCGAGAGAAAGGGGTGGTTCGTGGGATGGATTCCGGCAACAGCGGGAGTCTCCAGTCGTCGAGTGGAGGGGACGACGAGTTCGACTCCAGATGCGGCGGCGGTGGCGTGGACTCGTCGCCGCTCTCCGCGCTGCTGCGGCAGTCGGCGTCGGCGTCGGGGTTCGGTGGTGGCACTGGCTCGTTTTATGGCTTGCAGGAGCTCGCGTCGCCGCCGCCCCAGCTGCCGCCCTTGTCTCAGGCGGCGGCGCATCAGTGGACGGCGCCGCTTCCCGGTGGAGGTGGAGCGGGGGGAGCGTCGTCCTCGCCGCCGTCGTCGTCGTCGCCGCACGGCGTGCAGGTCTCTGCCGAGCAGGTGGTGGCGCAGCAGGGACAGGGGGTCGGCGCGCCGCCGGCGAGGGGGTCGAGGAAGCGGACGCGGGCGTCGCGGCGCGCGCCGACGACGGTGCTGACCACCGACACCTCCAACTTCCGCGCCATGGTGCAGGAGTTCACCGGCATCCCCTCGCCGCCCTTCGCCGGGCCACCCGCGCGCTCGCGGTTCGACCACCTCTTCCCCGCCCCCTCCTCCCTCCGCTCCGCCGCTACCGCCGCCGGCGGCGGGAACCCGTCCTCGCTCCCGGCCTACCTCCTCCGCCCGTTCGCGCAGAAGCACCACCCTTCCCCGTTCCCGCCTTTCCCCTCGCCCTCCACGTCCTCGCCGTCGCCGTCCAACATTGCCATTGCAACCTCCACCGCCGCCGCAACCACGGCGGCGGTGGCGGCACCCGGCGACAGGTACCACCTCGCGTCGGCGCCGTCGTCCTCTCTCCTAGGGATGCAGGATCACGGCGGCAGTTACCTCTCCTTCCAGAGCCACCTCGGCGGCGCCCAGCTCGGCGCCAGCGACGACGTCAAGTACACCGCGCACACCATGTTCGACGCTCCCGGCAGCGACCTAGCCCCGCGGCCGCCGCCGCAGAGGCTGCAGGATCCGGCGGCCGGCTTCCTCGGCCTCACGCATGGCATCATGGGCGCCGACGGGTCGCACATGCACCAGCAACAACGAAGCCGCGGCCACGGCCACGGCGGCGACGAGCTGTCCGGCGTGGTCGGGGGCGCGTCCATGACCCGGAGCGTCGGCGGCGGCGGCAAGAAGACGACCTTCTCGTCCGGCGCCGGCGCGGCGGCCCACGCAGCGCCTCAACTGGAGCACAATGCGGAGAGCACGTCGGTCACCGTCGCCGCAGCGCCGACACCTTCGTCGGCGGCGGCGACGGCGGCGATGAGAACGCAATCCGTGGACTCGTGGATTTGTACATCGGAGTAGGTCAATTCACTCGCTTCATTATATTCCAAGAGCAGATTGGCTTGTAGTAGTAAAGCTCATTTAGCTAGTAGCTTAATTTCATTTGGTTCTTTAATATCTTATTAATCTCTACTACTCCTTTGGGTGTTTAATTCCCCTATTTGCATATGCTCTTTGTGTAGATCGATCAAACCAAACAACAAGATCATACTATCATAGT
More
|
||||||||||
| CDS seq | ATGGATTCCGGCAACAGCGGGAGTCTCCAGTCGTCGAGTGGAGGGGACGACGAGTTCGACTCCAGATGCGGCGGCGGTGGCGTGGACTCGTCGCCGCTCTCCGCGCTGCTGCGGCAGTCGGCGTCGGCGTCGGGGTTCGGTGGTGGCACTGGCTCGTTTTATGGCTTGCAGGAGCTCGCGTCGCCGCCGCCCCAGCTGCCGCCCTTGTCTCAGGCGGCGGCGCATCAGTGGACGGCGCCGCTTCCCGGTGGAGGTGGAGCGGGGGGAGCGTCGTCCTCGCCGCCGTCGTCGTCGTCGCCGCACGGCGTGCAGGTCTCTGCCGAGCAGGTGGTGGCGCAGCAGGGACAGGGGGTCGGCGCGCCGCCGGCGAGGGGGTCGAGGAAGCGGACGCGGGCGTCGCGGCGCGCGCCGACGACGGTGCTGACCACCGACACCTCCAACTTCCGCGCCATGGTGCAGGAGTTCACCGGCATCCCCTCGCCGCCCTTCGCCGGGCCACCCGCGCGCTCGCGGTTCGACCACCTCTTCCCCGCCCCCTCCTCCCTCCGCTCCGCCGCTACCGCCGCCGGCGGCGGGAACCCGTCCTCGCTCCCGGCCTACCTCCTCCGCCCGTTCGCGCAGAAGCACCACCCTTCCCCGTTCCCGCCTTTCCCCTCGCCCTCCACGTCCTCGCCGTCGCCGTCCAACATTGCCATTGCAACCTCCACCGCCGCCGCAACCACGGCGGCGGTGGCGGCACCCGGCGACAGGTACCACCTCGCGTCGGCGCCGTCGTCCTCTCTCCTAGGGATGCAGGATCACGGCGGCAGTTACCTCTCCTTCCAGAGCCACCTCGGCGGCGCCCAGCTCGGCGCCAGCGACGACGTCAAGTACACCGCGCACACCATGTTCGACGCTCCCGGCAGCGACCTAGCCCCGCGGCCGCCGCCGCAGAGGCTGCAGGATCCGGCGGCCGGCTTCCTCGGCCTCACGCATGGCATCATGGGCGCCGACGGGTCGCACATGCACCAGCAACAACGAAGCCGCGGCCACGGCCACGGCGGCGACGAGCTGTCCGGCGTGGTCGGGGGCGCGTCCATGACCCGGAGCGTCGGCGGCGGCGGCAAGAAGACGACCTTCTCGTCCGGCGCCGGCGCGGCGGCCCACGCAGCGCCTCAACTGGAGCACAATGCGGAGAGCACGTCGGTCACCGTCGCCGCAGCGCCGACACCTTCGTCGGCGGCGGCGACGGCGGCGATGAGAACGCAATCCGTGGACTCGTGGATTTGTACATCGGAGTAG
More
|
||||||||||
| Protein seq | MDSGNSGSLQSSSGGDDEFDSRCGGGGVDSSPLSALLRQSASASGFGGGTGSFYGLQELASPPPQLPPLSQAAAHQWTAPLPGGGGAGGASSSPPSSSSPHGVQVSAEQVVAQQGQGVGAPPARGSRKRTRASRRAPTTVLTTDTSNFRAMVQEFTGIPSPPFAGPPARSRFDHLFPAPSSLRSAATAAGGGNPSSLPAYLLRPFAQKHHPSPFPPFPSPSTSSPSPSNIAIATSTAAATTAAVAAPGDRYHLASAPSSSLLGMQDHGGSYLSFQSHLGGAQLGASDDVKYTAHTMFDAPGSDLAPRPPPQRLQDPAAGFLGLTHGIMGADGSHMHQQQRSRGHGHGGDELSGVVGGASMTRSVGGGGKKTTFSSGAGAAAHAAPQLEHNAESTSVTVAAAPTPSSAAATAAMRTQSVDSWICTSE |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0409500 | OsNip_08t0409500-01 | Chr08 | 19610458 | 19612119 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATTCCGGCAACAGCGGGAGTCTCCAGTCGTCGAGTGGAGGGGACGACGAGTTCGACTCCAGATGCGGCGGCGGTGGCGTGGACTCGTCGCCGCTCTCCGCGCTGCTGCGGCAGTCGGCGTCGGCGTCGGGGTTCGGTGGTGGCACTGGCTCGTTTTATGGCTTGCAGGAGCTCGCGTCGCCGCCGCCCCAGCTGCCGCCCTTGTCTCAGGCGGCGGCGCATCAGTGGACGGCGCCGCTTCCCGGTGGAGGTGGAGCGGGGGGAGCGTCGTCCTCGCCGCCGTCGTCGTCGTCGCCGCACGGCGTGCAGGTCTCTGCCGAGCAGGTGGTGGCGCAGCAGGGACAGGGGGTCGGCGCGCCGCCGGCGAGGGGGTCGAGGAAGCGGACGCGGGCGTCGCGGCGCGCGCCGACGACGGTGCTGACCACCGACACCTCCAACTTCCGCGCCATGGTGCAGGAGTTCACCGGCATCCCCTCGCCGCCCTTCGCCGGGCCACCCGCGCGCTCGCGGTTCGACCACCTCTTCCCCGCCCCCTCCTCCCTCCGCTCCGCCGCTACCGCCGCCGGCGGCGGGAACCCGTCCTCGCTCCCGGCCTACCTCCTCCGCCCGTTCGCGCAGAAGCACCACCCTTCCCCGTTCCCGCCTTTCCCCTCGCCCTCCACGTCCTCGCCGTCGCCGTCCAACATTGCCATTGCAACCTCCACCGCCGCCGCAACCACGGCGGCGGTGGCGGCACCCGGCGACAGGTACCACCTCGCGTCGGCGCCGTCGTCCTCTCTCCTAGGGATGCAGGATCACGGCGGCAGTTACCTCTCCTTCCAGAGCCACCTCGGCGGCGCCCAGCTCGGCGCCAGCGACGACGTCAAGTACACCGCGCACACCATGTTCGACGCTCCCGGCAGCGACCTAGCCCCGCGGCCGCCGCCGCAGAGGCTGCAGGATCCGGCGGCCGGCTTCCTCGGCCTCACGCATGGCATCATGGGCGCCGACGGGTCGCACATGCACCAGCAACAACGAAGCCGCGGCCACGGCCACGGCGGCGACGAGCTGTCCGGCGTGGTCGGGGGCGCGTCCATGACCCGGAGCGTCGGCGGCGGCGGCAAGAAGACGACCTTCTCGTCCGGCGCCGGCGCGGCGGCCCACGCAGCGCCTCAACTGGAGCACAATGCGGAGAGCACGTCGGTCACCGTCGCCGCAGCGCCGACACCTTCGTCGGCGGCGGCGACGGCGGCGATGAGAACGCAATCCGTGGACTCGTGGATTTGTACATCGGAGTAG
More
|
|||||||
| Protein seq | MDSGNSGSLQSSSGGDDEFDSRCGGGGVDSSPLSALLRQSASASGFGGGTGSFYGLQELASPPPQLPPLSQAAAHQWTAPLPGGGGAGGASSSPPSSSSPHGVQVSAEQVVAQQGQGVGAPPARGSRKRTRASRRAPTTVLTTDTSNFRAMVQEFTGIPSPPFAGPPARSRFDHLFPAPSSLRSAATAAGGGNPSSLPAYLLRPFAQKHHPSPFPPFPSPSTSSPSPSNIAIATSTAAATTAAVAAPGDRYHLASAPSSSLLGMQDHGGSYLSFQSHLGGAQLGASDDVKYTAHTMFDAPGSDLAPRPPPQRLQDPAAGFLGLTHGIMGADGSHMHQQQRSRGHGHGGDELSGVVGGASMTRSVGGGGKKTTFSSGAGAAAHAAPQLEHNAESTSVTVAAAPTPSSAAATAAMRTQSVDSWICTSE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.587590 | 0.057864 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0370500 | RBH | 0.360806 | 0.280062 | 0.447557 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g31660 | RBH | 0.379547 | 0.037174 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0409500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0015670 | RBH | 0.0 | 7.562346 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0015530 | RBH | 0.0 | 0.627792 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015460 | RBH | 0.0 | 1.297185 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0015790 | RBH | 0.0 | 0.233686 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015580 | RBH | 0.0 | 6.043924 | 0.659718 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0312100 | RBH | 0.4441245 | 0.9420355 | 0.071573 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0015540 | RBH | 0.0 | 0.0 | 0.045000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0333700 | RBH | 0.416038 | 0.718433 | 1.8710675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0015060 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0015200 | RBH | 0.0 | 1.763596 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0015110 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0015830 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0015230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G015340 | RBH | 0.0 | 0.519223 | 0.207147 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0015470 | RBH | 0.0 | 0.0 | 0.0 |
